genome.fa.s2552.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2552
Parameters: 2 7 7 80 10 50 1000
Length:  81852

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
804--876	28	2.6	27	82	2	74	73	10	10	4	1.21
3087--3207	55	2.2	55	87	0	170	26	22	15	35	1.94
3269--3750	36	14.0	34	75	10	251	34	27	17	20	1.95
3288--4140	31	25.7	31	74	10	232	32	27	18	21	1.97
3269--3649	170	2.2	169	84	3	471	33	27	18	20	1.96
3516--3749	107	2.2	108	85	3	312	36	29	15	19	1.92
3346--3749	36	11.5	36	75	11	261	35	28	17	19	1.94
3344--3749	72	5.8	71	77	10	379	35	28	16	19	1.94
3346--3846	277	1.8	276	86	3	738	34	28	17	19	1.94
3826--4190	62	5.7	62	75	12	274	29	28	18	24	1.98
3895--4190	127	2.3	126	78	10	296	31	26	18	23	1.98
4079--4168	34	2.5	36	85	7	112	35	26	13	24	1.92
3348--4177	36	24.7	36	75	9	242	32	28	18	21	1.96
4375--4544	79	2.2	79	81	0	196	27	27	12	32	1.93
4548--4695	81	1.9	80	85	5	210	20	27	18	33	1.96
10311--10374	27	2.4	27	89	5	94	14	12	45	28	1.81
13318--13375	29	2.0	29	83	9	75	27	17	29	25	1.97
20235--20282	21	2.3	21	89	3	71	33	8	20	37	1.83
23648--23798	16	9.4	16	78	4	144	40	32	15	11	1.83
23648--23799	48	3.2	46	79	7	160	40	32	15	11	1.84
24734--24774	22	1.9	21	85	5	55	43	17	7	31	1.76
24832--24906	16	4.6	16	86	1	105	44	32	14	9	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24925--24959	15	2.3	15	90	0	52	51	34	5	8	1.56
37977--38037	9	6.1	9	78	17	59	44	0	42	13	1.43
37960--38066	42	2.5	42	90	0	169	42	1	43	12	1.52
51022--51092	18	3.6	18	71	20	52	11	42	2	43	1.55
51007--51125	42	2.8	42	89	0	184	9	45	2	42	1.49
51031--51116	24	3.8	24	73	17	85	11	44	2	41	1.53
51035--51095	9	7.1	9	72	10	56	11	42	3	42	1.57
55576--56032	165	2.8	166	86	2	643	33	12	12	40	1.82
59211--59286	12	6.9	11	75	15	52	39	2	48	9	1.49
59210--59295	24	3.8	24	72	17	85	41	2	45	10	1.51
59201--59319	42	2.8	42	92	0	193	42	2	46	8	1.47
69998--70087	29	3.1	28	81	7	92	24	14	30	31	1.95
70048--70104	29	2.0	29	96	0	105	26	14	26	33	1.94
70208--70338	29	4.5	29	82	4	133	28	16	29	25	1.96
70297--70566	31	8.3	30	75	11	155	26	18	24	30	1.98
70375--70525	62	2.4	64	81	6	182	22	21	24	31	1.99
70309--70487	93	1.9	94	82	5	225	24	21	24	30	1.99
70471--70598	36	3.6	35	81	9	134	25	16	25	32	1.96
78363--78481	42	2.8	42	92	0	193	8	46	2	42	1.47
78396--78471	12	6.9	11	75	15	52	9	48	2	39	1.49
78387--78472	24	3.8	24	72	17	85	10	45	2	41	1.51
78378--78448	18	3.6	18	69	20	52	9	43	2	43	1.52

Tables:   1

The End!