genome.fa.s2554.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2554
Parameters: 2 7 7 80 10 50 1000
Length:  63803

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7443--7804	158	2.3	158	97	0	681	29	16	29	24	1.97
7443--7803	79	4.6	79	81	2	422	29	16	29	24	1.97
7670--7724	28	1.9	29	88	3	85	36	20	23	20	1.95
7679--7883	107	1.9	108	82	3	261	30	16	27	26	1.96
7758--7834	28	2.8	28	85	0	91	24	19	32	23	1.97
7817--7991	52	3.4	52	80	10	173	30	11	26	31	1.91
7707--8208	262	1.9	265	88	3	773	31	13	26	29	1.94
7817--8037	103	2.1	103	83	3	266	31	12	25	30	1.92
8020--8095	27	2.8	27	87	2	98	23	21	30	25	1.99
7818--8203	51	7.3	52	71	14	229	31	12	25	30	1.92
10754--10779	13	2.0	13	100	0	52	38	15	15	30	1.88
10819--10886	19	3.9	18	76	23	83	38	14	11	35	1.83
10841--10865	13	1.9	13	100	0	50	32	16	16	36	1.90
10822--10884	32	2.0	32	96	0	117	36	15	12	34	1.86
10922--11040	21	5.7	21	89	2	177	36	17	11	34	1.87
10922--11040	42	2.8	42	92	2	195	36	17	11	34	1.87
27782--27930	52	2.9	52	91	2	237	30	18	18	32	1.95
27899--27970	20	3.6	20	98	0	135	37	16	19	26	1.93
28023--28085	19	3.7	18	72	24	64	36	15	12	34	1.86
28015--28096	32	2.6	32	92	0	137	34	15	14	35	1.89
28803--29660	49	17.8	49	78	10	813	32	18	24	24	1.97
29196--29660	92	5.0	92	93	0	768	31	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28918--29660	184	3.9	184	85	8	877	32	18	25	24	1.97
29729--29784	27	2.1	27	89	0	85	37	14	26	21	1.92
29754--29901	35	4.4	33	79	12	133	37	12	31	19	1.89
29754--29923	69	2.5	68	80	11	181	36	11	31	20	1.89
29729--30046	31	10.0	31	78	12	206	32	13	31	22	1.93
29857--30041	62	3.0	60	86	7	246	28	15	32	24	1.95
29856--30041	94	2.0	96	88	4	281	28	15	32	24	1.95
31268--31306	14	2.9	14	84	3	53	0	0	20	79	0.73
31268--31306	13	2.9	13	81	7	51	0	0	20	79	0.73
38210--38357	52	2.9	51	85	3	206	31	17	16	33	1.93
38346--38370	13	1.9	13	100	0	50	36	16	16	32	1.90
38415--38466	13	3.5	13	73	26	50	36	17	13	32	1.89
38423--38485	19	3.7	18	76	24	73	36	17	12	33	1.88
38415--38496	32	2.6	32	96	0	146	36	17	12	34	1.87
42052--42093	22	1.9	22	95	0	75	38	4	35	21	1.75
42687--42713	13	2.1	13	100	0	54	29	14	14	40	1.86
42764--42834	20	3.9	20	74	24	84	32	11	18	38	1.86
42784--42864	13	7.2	13	69	27	69	32	12	18	37	1.88
42763--42864	33	3.1	33	94	5	172	32	11	18	37	1.87
43933--43967	17	2.1	17	100	0	70	45	11	11	31	1.76
45898--46024	52	2.5	52	88	1	175	29	18	12	38	1.88
45886--46024	51	2.7	51	84	3	172	32	17	11	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49839--49874	18	2.0	18	100	0	72	55	0	0	44	0.99
49896--49935	19	2.1	19	86	9	55	70	0	0	30	0.88
50070--50113	16	2.8	16	82	0	61	45	22	20	11	1.83
50160--50221	16	3.9	16	86	0	88	38	35	17	8	1.80
50144--50233	32	2.8	32	83	6	110	37	36	15	10	1.81
51656--51729	21	3.5	21	76	7	87	32	8	12	47	1.70
51650--51729	42	1.9	42	89	0	124	31	8	13	46	1.74
59783--59845	28	2.1	28	85	11	81	46	11	3	39	1.55
62901--62939	3	12.3	3	89	10	60	33	0	66	0	0.92

Tables:   1

The End!