genome.fa.s2555.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2555
Parameters: 2 7 7 80 10 50 1000
Length:  78774

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2726--2779	20	2.7	20	91	5	83	31	11	18	38	1.86
9098--9137	20	2.0	20	85	14	55	32	22	2	42	1.67
9409--9454	20	2.2	20	84	7	56	19	41	28	10	1.85
11764--11838	33	2.3	33	90	0	114	33	16	24	26	1.95
25790--25867	31	2.6	30	91	2	120	28	15	8	47	1.75
29779--29903	52	2.4	52	93	0	214	28	18	18	35	1.94
29779--29923	52	2.8	51	87	4	202	29	17	18	33	1.95
29912--29936	13	1.9	13	100	0	50	36	16	16	32	1.90
29975--30031	19	3.0	19	87	5	80	42	17	10	29	1.83
31907--32042	58	2.4	57	82	6	150	45	16	13	24	1.83
32748--32835	45	2.0	45	95	0	158	35	17	14	32	1.90
33336--33409	37	2.0	37	100	0	148	35	10	21	32	1.88
34215--34251	18	2.0	19	89	5	58	5	10	0	83	0.79
37999--38511	140	3.6	140	83	3	589	29	18	17	34	1.94
40765--40879	60	1.9	60	92	0	194	35	5	20	39	1.75
41574--41619	15	3.1	15	81	15	60	43	0	0	56	0.99
44237--44311	20	3.8	20	90	0	114	34	8	17	40	1.79
45218--45260	20	2.3	19	81	18	54	25	20	11	41	1.86
46810--47030	79	2.8	79	86	2	282	35	13	23	27	1.93
46990--47055	28	2.4	28	84	5	80	30	12	28	28	1.93
46910--47139	108	2.1	107	84	4	293	33	14	26	26	1.95
57340--57432	20	4.7	20	93	2	152	31	19	11	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57461--57516	19	2.9	19	89	2	85	35	12	19	32	1.89
57501--57526	13	2.0	13	100	0	52	38	15	15	30	1.88
60796--60821	13	2.0	13	100	0	52	46	0	0	53	1.00
62605--62640	15	2.4	15	86	13	56	47	8	11	33	1.69
63588--63622	10	3.4	10	88	4	52	60	11	2	25	1.45
67815--67853	10	3.8	10	83	6	51	17	0	2	79	0.84
69781--70492	167	4.3	167	78	5	603	50	8	11	29	1.68
72053--72105	21	2.5	22	84	9	74	47	9	11	32	1.71
73336--73360	13	1.9	13	100	0	50	36	16	16	32	1.90
73316--73381	32	2.0	33	94	2	116	34	12	16	36	1.86
73422--73446	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1

The End!