genome.fa.s2556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2556
Parameters: 2 7 7 80 10 50 1000
Length:  50805

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76--257	1	182.0	1	96	0	328	97	1	1	0	0.17
611--636	13	2.0	13	100	0	52	38	15	15	30	1.88
593--656	32	2.0	33	90	3	103	39	18	14	28	1.90
2853--2897	21	2.1	21	84	8	56	53	4	20	22	1.63
4700--4730	15	2.1	15	93	0	53	48	16	22	12	1.80
6807--6832	13	2.0	13	100	0	52	30	15	15	38	1.88
6953--6998	21	2.2	20	81	11	58	32	19	4	43	1.71
15881--15906	12	2.2	12	100	0	52	30	0	15	53	1.42
16549--16591	22	2.0	22	90	9	70	44	4	9	41	1.57
16692--16755	33	1.9	33	90	0	101	37	17	10	34	1.85
18313--18510	78	2.5	78	81	2	200	29	16	28	25	1.96
18468--18541	28	2.6	28	84	0	85	24	17	32	25	1.97
18524--19179	52	12.4	52	71	14	414	30	12	27	29	1.92
18414--19181	265	2.9	265	94	1	1303	30	12	27	29	1.93
18994--19066	27	2.6	28	83	14	98	20	20	34	24	1.97
21547--21606	13	5.0	13	71	19	58	41	11	16	30	1.84
21526--21626	34	3.0	34	92	1	168	44	11	16	26	1.83
21644--21747	19	6.2	17	72	27	98	36	14	11	37	1.82
21668--21724	13	3.9	13	76	24	60	33	15	14	36	1.88
21649--21743	32	3.0	32	96	0	172	34	15	12	36	1.86
30616--31353	60	12.4	61	71	12	328	22	24	12	40	1.89
30738--30846	30	3.6	30	76	11	96	21	22	15	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30610--31353	121	6.3	120	77	7	696	22	24	12	40	1.89
30969--31078	30	3.7	28	70	11	85	17	25	17	40	1.91
32852--32918	20	3.7	20	74	25	85	32	11	20	34	1.90
32872--32898	13	2.1	13	100	0	54	37	14	14	33	1.88
32851--32929	33	2.4	33	100	0	158	34	12	20	32	1.90
32905--32929	13	1.9	13	100	0	50	36	16	16	32	1.90
33693--33749	13	3.9	13	72	24	51	35	12	17	35	1.87
33673--33773	32	3.1	32	94	1	175	34	10	17	36	1.85
33671--33768	19	5.8	18	69	28	81	33	11	17	37	1.85
33845--33973	52	2.5	52	85	0	186	37	17	17	28	1.92
43500--43566	33	2.0	33	82	5	82	31	19	11	37	1.88
43614--43673	13	5.1	13	73	22	69	40	15	16	28	1.89
43594--43692	33	3.0	33	89	5	148	39	14	17	29	1.88
43626--43692	20	3.7	19	74	25	74	41	14	16	26	1.87
46457--46527	28	2.5	28	82	8	83	61	8	16	12	1.54
48442--48585	52	2.8	52	81	7	152	36	12	24	27	1.91
48298--48790	260	1.9	259	84	7	669	31	13	25	28	1.94
48606--48680	27	2.8	26	88	8	98	21	22	32	24	1.98
48664--48785	53	2.4	51	83	8	140	31	11	23	32	1.90

Tables:   1

The End!