Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2558
Parameters: 2 7 7 80 10 50 1000
Length:  23333

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4631--4715
20
4.6
20
73
19
94
38
11
12
36
1.81
4647--4713
33
2.0
33
91
0
107
40
11
13
34
1.81
5642--6264
49
13.6
50
69
15
210
30
18
25
25
1.98
5636--5822
98
1.9
100
84
3
243
33
16
25
24
1.96
5546--5868
49
6.5
49
72
7
170
31
17
26
24
1.97
5636--5874
101
2.4
101
83
3
270
31
17
26
24
1.97
5841--6128
39
6.8
39
71
12
153
28
20
25
26
1.99
5797--6044
126
2.0
127
86
0
354
26
20
26
26
1.99
5891--6266
87
4.2
87
85
6
450
30
18
24
25
1.98
5891--6284
91
4.4
91
87
1
473
30
18
24
25
1.98
6278--6632
34
10.8
33
76
10
311
36
12
31
20
1.89
6275--6720
67
6.9
65
78
9
396
36
12
30
20
1.90
6563--6660
34
3.3
27
75
19
88
34
12
30
22
1.91
6505--6693
61
3.1
61
81
7
170
36
13
30
19
1.90
6627--6721
33
2.8
34
77
6
95
35
13
28
22
1.92
6627--6698
34
2.1
34
82
2
92
41
12
27
18
1.86
6714--7069
95
3.8
93
80
9
350
32
15
29
22
1.94
6713--7079
33
11.7
32
78
13
345
32
14
30
22
1.94
6713--7076
62
5.8
63
81
8
406
32
14
30
21
1.94
8334--8365
9
3.6
9
95
0
55
3
0
6
90
0.53
13759--13907
52
2.9
51
89
4
235
30
17
18
32
1.94
13896--13920
13
1.9
13
100
0
50
36
16
16
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13983--14007
13
1.9
13
100
0
50
32
16
16
36
1.90
18983--19037
20
2.8
20
88
5
76
40
12
14
32
1.84
20191--20216
13
2.0
13
100
0
52
30
15
15
38
1.88
22416--22472
30
1.9
30
82
7
71
70
1
12
15
1.25

Tables:   1

The End!