genome.fa.s2559.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2559
Parameters: 2 7 7 80 10 50 1000
Length:  58579

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4299--4425	52	2.4	52	92	0	209	26	15	19	37	1.92
4299--4447	52	2.9	52	87	2	183	28	15	19	36	1.92
4436--4494	13	4.9	13	73	26	67	35	13	16	33	1.88
4436--4515	34	2.4	34	100	0	160	35	12	17	35	1.88
6752--6792	20	2.0	21	85	9	57	43	24	14	17	1.86
7096--7168	34	2.1	35	85	7	96	16	12	12	58	1.62
14181--14251	28	2.4	29	82	17	85	53	1	25	19	1.53
14181--14251	27	2.4	30	82	17	87	53	1	25	19	1.53
19572--19618	20	2.3	20	85	0	58	40	19	14	25	1.90
20156--20247	41	2.2	43	83	11	120	36	13	5	44	1.66
20319--20377	26	2.2	27	81	3	75	38	13	5	42	1.66
20899--20963	7	8.9	7	78	20	62	83	0	12	4	0.80
20898--20963	13	4.6	13	75	18	60	83	0	12	4	0.79
20896--20956	10	5.8	10	80	7	59	81	0	13	4	0.83
21635--21732	36	2.7	35	84	4	124	23	10	3	63	1.40
21717--21764	18	2.8	17	84	6	60	20	12	4	62	1.46
22732--22768	19	1.9	19	94	0	65	29	16	18	35	1.93
24505--24544	9	4.2	9	84	12	53	50	2	0	47	1.14
28830--28874	21	2.2	20	84	11	56	40	15	13	31	1.86
35223--35262	20	2.0	20	85	9	55	45	0	0	55	0.99
35644--35733	44	2.0	44	100	0	180	26	13	21	38	1.90
36390--36414	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36519--36647	52	2.5	52	93	0	222	34	16	19	29	1.93
43888--44112	31	7.1	31	78	11	190	22	29	14	33	1.93
43895--44133	62	3.7	63	78	11	263	23	30	13	32	1.94
43895--44149	64	4.0	64	77	11	247	22	30	14	32	1.93
43959--44182	34	6.8	34	75	12	166	21	31	13	33	1.92
44151--44234	27	3.1	27	89	1	125	23	30	11	33	1.91
46647--46673	9	3.0	9	100	0	54	55	22	0	22	1.44
47457--47577	52	2.3	52	97	0	224	28	18	18	34	1.94
47457--47597	52	2.7	51	90	4	212	30	17	18	33	1.94
47586--47610	13	1.9	13	100	0	50	36	16	16	32	1.90
47673--47697	13	1.9	13	100	0	50	32	16	16	36	1.90
48547--49148	43	12.7	52	75	15	358	32	17	24	24	1.97
48654--50337	43	36.8	43	73	16	1239	32	17	25	24	1.97
48601--50332	92	18.9	92	83	9	1581	32	17	25	24	1.97
48881--49462	319	1.8	314	92	2	986	32	17	24	24	1.97
48555--50482	594	3.2	594	98	0	3673	32	17	25	24	1.97
49475--50056	319	1.8	314	92	2	995	32	18	25	24	1.97
50470--50573	32	3.3	32	92	5	169	14	19	37	28	1.91
50581--51151	34	17.8	34	70	17	289	30	13	33	22	1.92
50615--50724	27	3.8	27	76	15	121	22	16	38	22	1.93
50580--50953	61	5.9	61	81	9	410	29	13	35	21	1.92
50962--51022	28	2.2	27	88	2	86	29	8	34	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50934--51050	61	1.9	63	83	3	157	26	11	34	27	1.92
51030--51170	62	2.3	62	85	6	178	28	15	30	25	1.96
51030--51170	32	4.5	31	81	9	144	28	15	30	25	1.96
51062--51186	31	4.0	31	83	9	148	28	15	30	26	1.96
51280--51325	8	5.6	8	92	5	65	26	4	23	45	1.71
52166--52199	16	2.1	16	94	0	59	0	8	8	82	0.85
52146--52197	22	2.4	22	83	6	61	0	5	11	82	0.82
58047--58167	52	2.3	52	95	0	215	28	17	18	35	1.93
58047--58187	52	2.7	51	89	4	203	30	17	18	34	1.94
58176--58200	13	1.9	13	100	0	50	36	16	16	32	1.90
58262--58286	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1

The End!