genome.fa.s2560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2560
Parameters: 2 7 7 80 10 50 1000
Length:  63793

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254--283	6	5.2	6	92	8	53	83	0	0	16	0.65
4443--4487	22	2.0	22	83	8	56	33	4	31	31	1.78
4882--4923	21	2.0	22	86	13	61	40	7	14	38	1.73
5167--5192	13	2.0	13	100	0	52	38	15	15	30	1.88
5150--5212	33	1.9	32	90	3	99	39	20	14	25	1.90
10479--10528	25	2.0	25	92	0	82	32	28	2	38	1.68
19313--19366	20	2.7	20	83	13	67	37	18	12	31	1.89
19395--19432	20	1.9	19	94	5	67	28	18	15	36	1.92
19417--19441	13	1.9	13	100	0	50	32	16	16	36	1.90
20566--20626	20	3.0	20	80	0	68	37	19	14	27	1.91
20616--20640	13	1.9	13	100	0	50	32	16	16	36	1.90
20628--20680	20	2.6	21	84	3	72	39	15	16	28	1.89
25256--25462	79	2.6	79	82	1	236	29	16	28	24	1.96
25414--25485	28	2.6	28	86	0	90	25	19	33	22	1.97
25508--25692	51	3.6	51	78	8	146	34	12	24	28	1.92
25473--25693	103	2.1	103	80	3	230	33	12	25	28	1.93
25473--25693	52	4.3	51	78	4	210	33	12	25	28	1.93
25363--25862	262	1.9	263	89	2	783	31	13	26	28	1.94
25676--25751	27	2.8	26	88	9	100	21	22	34	22	1.97
28222--28247	13	2.0	13	100	0	52	38	15	15	30	1.88
28201--28267	33	2.0	33	88	0	98	43	16	14	25	1.86
28287--28354	19	3.9	18	76	23	83	38	14	11	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28309--28333	13	1.9	13	100	0	50	32	16	16	36	1.90
28290--28352	32	2.0	32	96	0	117	36	15	12	34	1.86
28410--28485	21	3.6	21	98	0	143	38	21	10	30	1.87
29329--29417	29	3.2	29	63	15	78	21	19	32	26	1.97
29257--29828	116	5.0	114	83	8	641	25	20	28	26	1.99
29280--29854	55	9.9	58	87	5	651	24	20	28	26	1.99
30820--30889	15	4.7	15	77	19	60	0	11	5	82	0.82
30822--30889	10	6.9	9	74	23	50	0	11	5	82	0.83
30819--30889	31	2.3	32	83	13	87	0	11	7	81	0.86
30820--30889	30	2.4	28	81	13	79	0	11	5	82	0.82
34816--34853	13	2.9	13	88	0	58	31	13	18	36	1.89
34985--35025	22	2.0	20	86	13	57	31	21	4	41	1.74
35287--35327	20	2.0	21	90	4	66	19	43	26	9	1.82
37325--37377	20	2.6	21	84	3	72	39	15	16	28	1.89
37438--37462	13	1.9	13	100	0	50	32	20	16	32	1.94
37419--37482	33	2.0	32	90	3	101	37	21	12	28	1.90
42664--42701	20	1.9	20	94	0	67	50	10	13	26	1.73
42953--43521	289	2.0	289	99	0	1129	31	18	11	38	1.87
48420--48838	166	2.5	166	79	7	435	29	13	8	48	1.72
49305--49345	18	2.2	19	87	12	59	68	7	9	14	1.39
50292--50630	142	2.4	141	81	5	362	35	10	11	41	1.77
53003--53101	52	1.9	52	87	4	146	32	17	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53428--53571	59	2.4	58	83	2	162	23	18	26	31	1.98
53566--53830	29	9.2	29	79	7	209	28	15	27	28	1.96
56787--56811	13	1.9	13	100	0	50	32	16	16	36	1.90
56892--56955	33	2.0	33	90	3	103	40	21	12	25	1.88

Tables:   1

The End!