Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2561
Parameters: 2 7 7 80 10 50 1000
Length:  46077

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3509--3535
2
13.5
2
100
0
54
51
0
0
48
1.00
3880--3914
2
17.5
2
93
0
61
48
0
2
48
1.16
6140--6165
11
2.4
11
100
0
52
92
0
7
0
0.39
6440--6512
25
3.1
23
77
22
64
49
0
2
47
1.15
6459--6521
25
2.5
26
76
23
71
47
0
3
49
1.17
6828--6867
2
20.0
2
100
0
80
50
0
0
50
1.00
7226--7280
10
5.5
10
75
0
56
43
3
1
50
1.30
7961--7986
3
8.7
3
100
0
52
69
0
0
30
0.89
11918--11942
7
3.6
7
100
0
50
76
0
0
24
0.80
12080--12117
2
19.0
2
100
0
76
50
0
0
50
1.00
12992--13074
41
2.1
38
86
6
112
34
1
1
62
1.11
12989--13074
38
2.2
37
83
12
100
36
1
1
61
1.11
13513--13538
2
13.0
2
100
0
52
50
0
0
50
1.00
16526--16550
10
2.5
10
100
0
50
76
0
8
16
1.02
17503--17572
38
1.9
34
86
11
95
50
1
0
48
1.09
18059--18132
32
2.3
32
93
4
123
48
2
0
48
1.15
18199--18232
3
12.0
3
87
12
54
35
0
0
64
0.94
18199--18232
14
2.4
14
90
9
52
35
0
0
64
0.94
18201--18237
11
3.4
11
96
0
65
32
0
2
64
1.07
18563--18605
20
2.1
20
83
12
52
53
0
0
46
1.00
18897--18965
22
2.9
23
78
10
68
57
1
0
40
1.07
19222--19322
30
3.2
31
77
20
95
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19226--19310
15
5.5
15
69
17
50
56
0
0
43
0.99
19341--19365
2
12.5
2
100
0
50
52
0
0
48
1.00
19779--19822
22
2.0
22
82
8
54
31
6
6
54
1.53
20004--20034
16
1.9
16
93
0
53
32
6
6
54
1.51
20120--20184
5
13.2
5
84
12
66
58
0
0
41
0.98
20120--20184
6
11.0
6
77
19
50
58
0
0
41
0.98
20440--20464
8
3.1
8
100
0
50
88
0
0
12
0.53
20887--20928
11
3.9
11
81
3
50
47
2
2
47
1.28
21345--21370
2
13.0
2
100
0
52
0
50
0
50
1.00
29891--29924
14
2.5
14
90
4
52
32
0
2
64
1.08
30510--30535
11
2.4
11
100
0
52
57
0
0
42
0.98
40656--40702
17
2.8
17
78
12
60
55
0
0
44
0.99
40643--40819
38
5.2
36
72
18
119
55
0
1
42
1.07
40646--40703
17
3.3
18
75
20
59
53
0
0
46
1.00
40638--40833
66
3.1
63
78
11
161
54
0
1
44
1.07
40643--40799
66
2.4
66
80
14
173
56
0
1
42
1.07
40728--40858
34
3.7
37
77
14
116
54
0
0
45
1.05
40733--40852
38
3.3
34
76
14
114
54
0
0
45
1.06
41874--41928
26
2.0
28
86
6
78
29
3
0
67
1.08
41984--42044
27
2.3
27
100
0
122
49
0
0
50
1.00
41984--42029
15
3.3
15
70
17
53
50
0
0
50
1.00
43408--43463
18
3.4
18
80
16
52
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43626--43680
18
3.0
18
74
12
58
43
1
0
54
1.10
43932--43992
30
2.1
30
82
14
74
42
0
1
55
1.09

Tables:   1

The End!