genome.fa.s2563.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2563
Parameters: 2 7 7 80 10 50 1000
Length:  131904

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745--901	40	3.7	42	77	13	139	36	13	28	21	1.91
887--1122	54	4.4	54	77	15	233	23	21	27	27	1.99
1040--1424	94	3.9	93	75	16	371	24	19	29	26	1.99
929--1478	207	2.7	203	84	9	723	24	20	28	26	1.99
1133--1329	54	3.5	54	87	6	245	24	21	27	26	1.99
1338--1478	55	2.6	54	87	4	201	24	20	27	27	1.99
1186--1547	149	2.4	146	88	4	530	26	20	28	25	1.99
2549--2600	1	52.0	1	80	0	59	0	0	9	90	0.46
2549--2600	16	3.3	15	92	7	86	0	0	9	90	0.46
2549--2601	27	2.0	27	92	3	90	0	0	11	88	0.51
2549--2601	11	4.9	11	81	9	65	0	0	11	88	0.51
12914--12940	4	6.8	4	100	0	54	77	0	0	22	0.76
15089--15257	51	3.4	51	78	5	175	32	12	26	28	1.92
15191--15373	79	2.3	78	82	4	235	33	14	25	26	1.94
15347--15623	51	5.4	51	79	8	271	31	11	26	31	1.91
15347--15623	102	2.7	101	81	7	319	31	11	26	31	1.91
17992--18032	21	2.0	21	100	0	82	26	19	9	43	1.82
18049--18081	13	2.5	13	95	0	57	30	18	15	36	1.91
18070--18123	21	2.7	20	77	8	65	38	14	12	33	1.85
18200--18233	16	2.1	17	88	5	52	20	2	2	73	1.09
18730--19053	176	1.8	176	83	2	427	29	15	26	28	1.96
18728--19070	89	3.9	89	79	3	363	28	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23594--23657	18	3.8	18	76	23	84	32	12	17	37	1.87
23615--23665	13	3.5	13	76	23	57	33	13	17	35	1.89
23596--23665	31	2.2	32	97	2	133	32	12	18	35	1.89
23743--23871	52	2.5	52	90	0	213	35	16	17	30	1.92
30769--30801	12	2.8	12	90	9	50	81	3	6	9	0.95
30749--30796	18	2.6	20	78	18	59	72	8	8	10	1.27
30793--30829	16	2.4	15	91	8	65	86	13	0	0	0.57
32013--32165	32	4.9	32	86	7	224	23	26	16	33	1.96
32013--32185	62	2.8	62	88	4	251	24	26	16	32	1.96
32189--32387	33	5.9	33	81	2	227	17	32	13	36	1.89
32382--32775	32	12.0	32	81	6	441	27	34	17	20	1.95
32391--32775	66	5.8	66	94	1	648	28	34	17	19	1.95
32391--32775	98	3.9	97	82	4	486	28	34	17	19	1.95
35831--35978	51	2.9	51	92	2	242	29	18	18	33	1.95
35967--35991	13	1.9	13	100	0	50	36	16	16	32	1.90
36034--36131	19	5.8	18	68	28	72	36	17	12	33	1.87
36053--36109	13	3.9	13	72	24	51	31	17	15	35	1.92
36032--36129	32	3.0	32	92	1	160	35	17	12	34	1.87
36450--37105	49	13.7	49	83	9	822	24	25	17	32	1.97
36497--37062	92	6.0	92	91	4	862	24	25	17	32	1.97
36865--37101	102	2.3	101	91	1	384	23	25	17	32	1.97
39496--39977	182	2.7	183	84	7	581	42	8	7	41	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40735--40772	12	3.1	12	92	7	67	2	15	0	81	0.80
41395--41819	165	2.6	166	82	6	481	49	6	12	31	1.66
45830--45866	18	2.1	18	100	0	74	24	5	10	59	1.52
49936--49988	20	2.6	21	82	11	58	41	1	3	52	1.30
50210--50260	3	17.0	3	91	0	75	60	0	5	33	1.21
51983--52026	19	2.2	20	80	15	56	63	9	0	27	1.24
51983--52033	20	2.6	21	78	12	63	62	11	0	25	1.29
54282--54506	114	2.0	114	85	1	308	37	8	9	43	1.69
54288--54533	114	2.2	115	83	1	307	38	8	8	44	1.65
58437--58461	13	1.9	13	100	0	50	40	20	16	24	1.91
58589--58643	22	2.5	22	96	0	101	45	9	14	30	1.76
59055--59094	19	2.0	19	85	9	53	35	22	5	37	1.76
59056--59159	51	2.1	50	90	3	165	42	19	8	29	1.81
59104--59149	23	2.1	23	88	8	69	47	19	4	28	1.68
59056--59199	50	2.9	51	83	5	152	38	18	10	31	1.85
61595--61650	20	2.8	20	97	0	103	28	14	12	44	1.81
61575--61650	40	1.9	40	83	0	98	30	14	13	42	1.84
66005--66114	34	3.2	34	80	5	96	39	20	27	12	1.89
68127--68364	97	2.5	97	90	0	377	28	29	10	30	1.91
74073--74119	23	2.0	24	83	4	60	51	14	17	17	1.77
74474--74514	11	3.5	11	81	12	55	78	0	19	2	0.87
74544--74700	80	2.0	80	100	0	314	39	26	8	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82373--82430	30	1.9	31	89	3	91	24	27	15	32	1.95
82398--82491	46	2.0	46	95	0	170	24	28	10	36	1.89
82450--83296	27	31.0	27	94	1	1451	21	35	14	27	1.93
82450--83296	82	10.3	81	94	1	1451	21	35	14	27	1.93
82450--83296	109	7.8	108	94	1	1451	21	35	14	27	1.93
83279--84262	32	31.8	32	89	4	1327	30	32	18	17	1.95
83288--84210	399	2.3	399	98	0	1758	30	33	18	17	1.95
85096--85142	23	2.0	24	83	4	60	51	14	17	17	1.77
85497--85537	11	3.5	11	81	12	55	78	0	19	2	0.87
88343--88396	20	2.8	19	83	5	72	33	14	12	38	1.85
90431--90470	20	1.9	22	90	10	66	12	12	0	75	1.06
90772--90943	92	1.9	90	86	2	245	17	21	6	54	1.65
92220--92273	17	3.0	17	71	12	54	35	1	0	62	1.06
92296--92358	30	2.0	31	90	6	101	63	0	0	36	0.95
92296--92350	9	6.8	9	72	19	50	60	0	0	40	0.97
99107--99141	3	11.7	3	100	0	70	31	0	0	68	0.90
104619--104668	25	2.0	25	88	4	73	60	6	32	2	1.32
104619--104669	26	2.1	25	85	10	70	60	5	31	1	1.31
106138--106335	78	2.5	78	80	4	202	30	16	28	24	1.97
109598--110090	156	3.2	154	83	6	577	38	16	16	28	1.90
116267--116397	32	4.2	31	77	12	124	29	16	25	28	1.97
116370--116919	62	8.9	62	84	2	667	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116370--116919	125	4.4	123	85	3	665	28	19	25	26	1.99
130483--130529	20	2.5	18	86	10	67	12	4	0	82	0.80
131076--131124	20	2.5	20	76	6	55	4	20	0	75	0.96

Tables:   1

The End!