genome.fa.s2564.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2564
Parameters: 2 7 7 80 10 50 1000
Length:  51424

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7548--7646	33	3.0	33	79	8	121	37	12	18	32	1.87
7679--7741	19	3.6	19	76	24	84	34	19	12	33	1.89
7666--7741	32	2.4	32	97	0	143	34	18	14	32	1.91
7665--7722	13	4.0	13	74	23	53	32	17	15	34	1.91
7677--7762	19	4.8	19	67	28	71	34	17	12	34	1.88
12200--12225	13	2.0	13	100	0	52	30	15	15	38	1.88
16758--16832	20	3.6	21	78	12	75	42	12	16	29	1.83
17449--17477	13	2.3	13	94	5	51	68	24	0	6	1.13
24184--24224	20	2.0	21	86	13	59	41	12	19	26	1.87
26106--26223	19	6.7	19	72	24	107	35	12	17	33	1.88
26129--26231	32	3.2	32	97	0	197	33	13	19	33	1.91
26180--26204	13	1.9	13	100	0	50	36	16	16	32	1.90
26272--26372	52	1.9	52	90	4	159	33	16	16	32	1.92
30743--30772	14	2.1	14	93	0	51	20	10	0	70	1.16
34040--34086	12	3.8	12	80	5	58	21	0	2	76	0.89
34042--34072	16	1.9	16	93	0	53	16	0	3	80	0.83
34584--34614	13	2.4	13	94	0	53	67	16	6	9	1.39
34973--35040	21	3.1	21	82	12	82	7	20	36	35	1.81
34973--35026	24	2.2	24	93	0	90	5	22	35	37	1.77
35035--35122	31	2.9	30	81	3	95	28	18	36	17	1.93
35761--35812	19	2.9	17	81	18	61	17	0	1	80	0.80
35759--35821	9	6.7	9	84	13	65	19	0	1	79	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35759--35821	10	6.6	10	82	8	53	19	0	1	79	0.82
36325--36921	42	14.2	42	86	2	752	36	19	30	13	1.90
37519--37546	13	2.2	13	100	0	56	28	14	17	39	1.89
48609--48653	22	2.0	23	82	4	56	44	2	20	33	1.63

Tables:   1

The End!