genome.fa.s2572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2572
Parameters: 2 7 7 80 10 50 1000
Length:  42400

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5781--5805	13	1.9	13	100	0	50	36	16	16	32	1.90
5761--5828	33	2.0	34	85	2	93	33	11	13	41	1.81
5872--5896	13	1.9	13	100	0	50	32	16	16	36	1.90
5905--6023	51	2.3	51	94	2	204	35	17	18	28	1.94
12932--12990	11	5.7	11	75	15	63	84	15	0	0	0.62
12928--13000	31	2.2	32	88	7	103	83	13	1	1	0.78
12927--12988	18	3.5	17	86	6	88	87	12	0	0	0.55
12927--12988	1	62.0	1	73	0	52	87	12	0	0	0.55
12927--13000	17	4.5	16	75	20	64	83	13	1	1	0.77
13237--13273	1	37.0	1	88	0	56	94	2	2	0	0.36
13237--13276	11	3.7	11	93	3	64	92	2	5	0	0.45
14232--14315	31	2.7	32	86	1	107	26	30	16	26	1.97
14229--14706	33	14.4	33	85	7	510	21	34	12	32	1.90
14691--14760	33	2.1	35	94	5	126	25	37	17	20	1.94
14760--15738	49	20.6	49	75	14	830	25	25	17	30	1.98
14755--15738	98	10.4	97	87	8	1195	25	26	17	30	1.98
15180--15262	41	2.0	42	85	4	114	30	24	18	27	1.98
15609--15677	22	3.2	22	63	19	54	26	26	17	30	1.97
15653--15870	67	3.8	54	75	12	188	24	24	14	36	1.93
15653--15790	52	2.6	52	82	3	159	25	23	15	34	1.95
16675--16741	33	2.0	33	88	0	98	34	11	13	40	1.81
16695--16719	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16785--16809	13	1.9	13	100	0	50	32	16	16	36	1.90
16818--16938	52	2.3	52	95	2	217	35	18	18	28	1.94
24177--24202	1	26.0	1	100	0	52	100	0	0	0	0.00
25169--25529	33	10.3	33	83	10	382	21	34	12	32	1.90
25167--25529	70	5.2	70	86	7	431	20	34	12	32	1.90
25169--25529	104	3.4	103	88	3	483	21	34	12	32	1.90
25168--25583	174	2.4	176	80	10	487	21	34	13	30	1.91
25516--25609	32	2.9	32	92	7	163	28	35	19	17	1.94
25516--25610	33	2.9	32	93	6	165	28	35	18	16	1.93
25660--25930	43	6.0	44	82	10	341	24	25	19	29	1.99
25615--25974	92	3.9	92	95	1	603	25	25	19	30	1.98
25888--26105	67	3.8	54	75	12	188	24	24	14	36	1.93
25888--26025	52	2.6	52	82	3	159	25	23	15	34	1.95
26909--26975	33	2.0	33	88	0	98	34	11	13	40	1.81
26929--26953	13	1.9	13	100	0	50	36	16	16	32	1.90
27019--27043	13	1.9	13	100	0	50	32	16	16	36	1.90
27052--27172	52	2.3	52	95	2	217	35	18	18	28	1.94
39751--40398	28	22.5	28	85	4	758	28	30	17	23	1.97
39751--40472	57	12.4	57	84	6	855	28	30	18	23	1.97
39751--40455	261	2.7	259	88	4	994	28	30	17	23	1.97
41334--41380	20	2.3	20	92	0	85	34	8	19	38	1.82

Tables:   1

The End!