genome.fa.s2573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2573
Parameters: 2 7 7 80 10 50 1000
Length:  51834

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843--1882	20	2.0	20	95	0	71	35	15	12	37	1.85
1841--1909	33	2.1	33	91	5	113	37	17	11	33	1.86
1871--1908	20	1.9	20	94	0	67	39	18	10	31	1.85
1841--1888	13	4.2	13	70	29	54	37	16	12	33	1.86
1959--1985	13	2.1	13	100	0	54	40	14	14	29	1.86
2946--2985	20	2.0	20	85	5	53	20	12	12	55	1.69
5260--5663	208	1.9	208	99	0	799	29	22	10	37	1.88
8211--8249	19	2.1	19	95	0	69	64	0	12	23	1.28
8214--8255	19	2.2	19	86	0	57	69	2	11	16	1.29
13813--13837	13	1.9	13	100	0	50	32	16	16	36	1.90
17063--17155	27	3.4	27	93	0	141	48	12	19	19	1.81
20145--20325	79	2.3	79	80	4	197	30	16	29	23	1.96
20280--20351	28	2.6	28	86	0	90	22	19	36	22	1.95
20339--20508	52	3.3	51	84	2	214	31	12	27	28	1.93
20374--20508	51	2.6	52	85	1	182	33	13	26	26	1.93
20440--20615	79	2.2	80	85	5	241	29	16	28	25	1.97
20572--20649	27	2.9	27	86	1	102	25	17	32	24	1.97
20630--20746	51	2.4	49	84	12	161	36	11	21	29	1.89
23171--23265	19	5.7	18	71	28	84	36	17	11	33	1.86
23161--23263	32	3.2	32	92	0	170	35	18	11	33	1.87
23188--23244	13	3.9	13	74	24	51	31	19	14	35	1.91
23893--23993	42	2.5	42	77	9	102	43	11	28	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24082--25562	55	25.6	54	82	9	1471	26	20	26	26	1.99
24083--25562	116	12.8	111	82	10	1521	26	20	26	26	1.99
24383--24469	29	3.1	29	65	25	78	21	19	31	27	1.98
24082--25562	236	6.4	231	91	4	2105	26	20	26	26	1.99
25561--25759	60	3.3	60	80	4	231	28	17	26	27	1.98
36909--36980	28	2.6	28	88	0	99	23	19	34	22	1.96
36969--37138	52	3.3	50	79	11	182	32	12	24	29	1.93
37112--37193	27	3.0	28	82	10	98	26	21	29	21	1.99
39609--39634	13	2.0	13	100	0	52	38	15	15	30	1.88
39588--39654	33	2.0	33	88	0	98	43	16	14	25	1.86
39674--39741	19	3.9	18	76	23	83	38	14	11	35	1.83
39696--39720	13	1.9	13	100	0	50	32	16	16	36	1.90
39677--39739	32	2.0	32	96	0	117	36	15	12	34	1.86
39797--39853	21	2.7	21	97	0	105	36	19	10	33	1.86
39857--39899	1	43.0	1	92	0	50	6	2	0	90	0.52
39864--39903	20	2.0	20	100	0	80	15	5	0	80	0.88
40401--41353	55	17.3	54	92	4	1409	20	20	29	28	1.98
40401--41353	165	5.8	165	94	2	1578	20	20	29	28	1.98
41136--41221	27	3.1	27	62	15	68	27	19	24	27	1.99
41219--41306	26	3.3	26	64	14	70	20	18	32	28	1.96
42335--42381	1	47.0	1	82	0	58	0	2	6	91	0.49
42335--42381	14	3.6	13	88	8	69	0	2	6	91	0.49

Tables:   1

The End!