genome.fa.s2575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2575
Parameters: 2 7 7 80 10 50 1000
Length:  106819

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2892--2916	13	1.9	13	100	0	50	32	20	16	32	1.94
2874--2936	32	1.9	33	90	3	101	39	17	14	28	1.89
3961--4078	51	2.3	51	85	5	150	33	11	24	29	1.91
6576--6603	13	2.2	13	100	0	56	39	17	14	28	1.89
6590--6631	21	2.0	21	100	0	84	28	19	9	42	1.82
6648--6720	32	2.3	32	90	0	110	36	17	12	32	1.87
8539--8591	16	3.3	16	86	0	70	50	7	9	32	1.62
9990--10041	2	27.0	2	84	7	63	44	0	3	51	1.19
15032--15403	49	7.5	49	75	4	316	23	25	18	32	1.97
15026--15357	101	3.3	98	81	4	353	24	25	17	32	1.97
16284--16311	13	2.2	13	100	0	56	28	14	17	39	1.89
16264--16330	33	2.0	33	88	5	100	29	14	13	41	1.85
16347--16400	20	2.7	20	97	0	99	37	14	9	38	1.79
24649--24733	29	3.0	29	81	6	111	45	4	2	47	1.36
24645--24733	27	3.2	27	81	6	115	46	4	2	47	1.35
28705--28744	20	2.0	20	85	9	55	45	5	2	47	1.38
30031--30092	20	3.1	19	77	11	61	51	0	3	45	1.17
30234--30269	2	18.0	2	100	0	72	50	0	0	50	1.00
35489--35563	20	3.8	20	78	0	87	34	13	12	40	1.81
35489--35566	40	2.0	39	87	2	111	34	12	12	39	1.82
36476--36530	22	2.5	22	96	0	101	20	10	7	61	1.52
38992--39044	16	3.3	16	76	5	54	49	5	11	33	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39648--39684	2	18.5	2	100	0	74	51	0	0	48	1.00
40219--40261	23	1.9	22	85	4	59	44	2	0	53	1.13
42428--42454	7	3.9	7	100	0	54	44	0	0	55	0.99
44489--44753	136	1.9	136	89	0	404	28	28	12	29	1.93
46543--46629	43	2.0	43	95	0	156	31	12	12	43	1.80
47669--47868	99	2.0	99	99	0	391	33	22	6	38	1.79
50731--50782	17	2.9	17	88	8	68	55	3	0	40	1.18
54292--54321	15	2.0	15	100	0	60	26	26	20	26	1.99
54507--54545	13	3.1	12	88	7	51	41	0	15	43	1.46
55021--55056	13	2.8	13	100	0	72	44	0	0	55	0.99
55355--55388	16	2.2	16	89	5	52	61	5	0	32	1.20
66959--67084	20	5.8	20	72	18	108	40	10	16	32	1.82
68850--68932	38	2.2	37	89	2	121	44	0	3	51	1.18
68872--68913	16	2.6	16	88	7	59	45	0	0	54	0.99
68888--68989	22	4.5	22	73	20	93	42	1	5	50	1.38
68890--69020	69	1.9	69	82	3	165	42	3	7	45	1.50
69033--69076	17	2.6	17	82	3	54	50	0	6	43	1.29
76262--76321	27	2.2	27	87	0	84	41	10	3	45	1.54
79438--79555	51	2.3	51	86	5	159	33	11	23	30	1.91
79535--79614	28	2.8	30	80	16	89	28	20	28	22	1.98
79491--79695	109	1.9	107	87	2	302	31	15	25	26	1.96
82057--82099	20	2.1	21	91	4	70	32	9	23	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82128--82153	13	2.0	13	100	0	52	38	15	15	30	1.88
82142--82183	21	2.0	21	95	0	75	30	16	9	42	1.80
82208--82293	19	4.7	19	70	20	67	34	15	12	37	1.85
82200--82272	32	2.3	32	95	0	128	35	16	12	35	1.86
83131--83588	55	8.1	55	86	6	555	25	20	26	27	1.99
83335--83476	28	5.1	28	60	19	73	26	19	26	28	1.99
97060--97085	13	2.0	13	100	0	52	38	15	15	30	1.88
97042--97105	32	2.0	33	90	3	103	42	15	14	28	1.86
101164--101194	15	2.1	15	93	0	53	48	16	22	12	1.80
105825--105849	13	1.9	13	100	0	50	32	20	16	32	1.94
105807--105869	32	1.9	33	90	3	101	39	17	14	28	1.89

Tables:   1

The End!