Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2577
Parameters: 2 7 7 80 10 50 1000
Length:  44105

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2111--2175
3
21.7
3
82
0
58
20
69
6
4
1.28
2120--2184
9
7.2
9
85
0
67
18
69
4
7
1.31
2668--2742
32
2.3
32
80
13
91
45
1
2
50
1.24
3228--3323
15
6.1
15
71
22
56
38
0
0
61
0.96
4629--4664
13
3.0
12
88
11
56
61
0
0
38
0.96
5654--5704
24
2.1
24
92
0
84
33
3
0
62
1.13
6118--6164
22
2.0
23
84
15
62
55
0
0
44
0.99
6122--6186
30
2.1
32
86
11
91
55
0
0
44
0.99
6150--6206
23
2.5
23
83
13
73
54
0
1
43
1.10
6127--6202
30
2.3
32
76
19
75
55
0
1
43
1.08
9028--9053
4
6.5
4
100
0
52
50
0
0
50
1.00
11334--11376
17
2.4
19
80
7
54
53
0
4
41
1.21
11577--11601
8
3.1
8
100
0
50
24
40
12
24
1.88
12948--12986
16
2.5
15
80
12
51
51
2
0
46
1.14
13025--13088
6
10.7
6
73
9
51
75
3
3
18
1.08
12926--13382
234
2.0
225
92
4
763
56
3
4
35
1.39
15249--15316
23
2.9
23
77
2
82
48
1
0
50
1.10
17280--17314
15
2.3
15
90
0
52
20
42
20
17
1.89
17781--17821
15
2.9
15
85
7
50
41
0
0
58
0.98
19391--19431
10
4.0
10
83
3
55
43
0
2
53
1.13
19420--19461
22
1.9
22
85
9
59
54
0
0
45
0.99
20268--20355
42
2.1
42
97
0
167
39
11
5
43
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20293--20360
22
3.2
21
62
17
50
36
11
7
44
1.69
21345--21411
18
3.7
18
76
7
57
53
1
1
43
1.19
25569--25600
2
16.0
2
100
0
64
0
50
0
50
1.00
26467--26511
21
2.0
22
83
8
56
51
0
2
46
1.13
26436--26544
32
3.5
32
82
7
125
53
1
1
43
1.22
28131--28186
24
2.3
23
85
14
69
41
0
0
58
0.98
28794--28829
2
18.0
2
94
0
63
47
2
0
50
1.15
37923--37970
25
2.0
25
87
4
71
25
2
4
68
1.18
38121--38157
17
2.1
19
85
10
51
51
2
0
45
1.15
38401--38462
30
2.1
29
81
3
70
38
1
1
58
1.18
40243--40306
23
2.8
23
88
6
87
35
3
10
50
1.54
40306--40346
21
1.9
22
85
5
57
39
2
0
58
1.11
41664--41790
51
2.6
49
81
12
127
48
0
2
48
1.20
41748--41829
28
3.0
28
72
16
75
56
0
0
43
0.99
41792--41831
20
2.0
20
85
4
55
67
0
0
32
0.91
42008--42033
2
13.0
2
100
0
52
50
0
0
50
1.00
42801--42856
25
2.2
24
75
9
58
46
1
3
48
1.30
42808--42862
25
2.2
26
83
9
69
45
0
3
50
1.19
43183--43234
22
2.6
19
79
11
59
48
1
1
48
1.24

Tables:   1

The End!