genome.fa.s2578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2578
Parameters: 2 7 7 80 10 50 1000
Length:  88330

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459--504	12	3.8	12	79	0	56	76	2	0	21	0.90
3755--3784	14	2.1	14	93	0	51	70	0	10	20	1.16
8150--8250	52	1.9	52	90	4	159	32	16	16	33	1.92
8299--8417	19	6.7	19	74	22	116	34	17	12	35	1.88
8290--8392	33	3.2	33	94	2	181	33	18	13	33	1.90
10303--10343	20	2.0	21	86	13	59	26	19	12	41	1.87
17686--17738	20	2.6	21	82	11	74	30	18	9	41	1.82
22271--22296	13	2.0	13	100	0	52	38	15	15	30	1.88
26822--26915	33	2.8	32	85	3	116	32	19	11	36	1.88
32425--32610	96	1.9	96	92	0	309	34	13	12	38	1.84
35112--35166	21	2.8	20	79	17	62	23	5	3	67	1.28
35121--35744	331	1.9	332	84	5	852	31	9	9	49	1.67
35064--35743	167	4.1	167	81	6	729	32	9	8	48	1.67
35097--35790	166	4.2	163	80	8	638	31	9	9	49	1.68
37163--37219	15	3.8	15	79	11	55	75	1	1	21	0.98
37164--37205	18	2.3	19	83	8	59	78	2	0	19	0.86
37234--37494	142	1.8	141	87	4	391	31	9	13	45	1.76
37718--38041	161	2.0	162	91	1	526	26	16	18	38	1.91
39064--39141	21	3.7	21	87	5	113	34	14	15	35	1.87
39177--39230	19	2.8	19	91	0	81	37	12	14	35	1.85
39270--39295	13	2.0	13	100	0	52	30	15	15	38	1.88
39828--39857	13	2.4	12	94	5	51	90	10	0	0	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39828--39860	12	2.8	12	95	4	59	84	15	0	0	0.61
41670--41995	52	6.3	51	80	8	327	30	24	11	33	1.90
41663--41996	105	3.2	103	81	4	411	30	24	11	33	1.90
41979--42055	28	2.8	28	87	0	100	23	33	19	23	1.97
41930--42129	107	1.9	108	81	3	251	27	27	16	30	1.96
48176--48208	16	2.1	16	94	0	57	15	12	27	45	1.81
54074--54108	13	2.8	12	87	12	52	88	8	2	0	0.61
55086--56505	55	25.2	60	83	10	1357	26	29	20	23	1.99
55109--56479	102	12.3	104	80	12	1131	26	29	20	22	1.99
55086--56505	451	3.2	449	89	6	1992	26	29	20	23	1.99
57216--57292	21	3.7	21	85	3	102	36	12	15	35	1.86
57327--57424	19	5.8	18	69	27	81	36	12	15	35	1.85
57330--57440	32	3.5	32	97	0	204	37	12	15	34	1.85
57349--57437	13	5.9	13	72	27	70	37	13	15	33	1.87
57480--57505	13	2.0	13	100	0	52	30	15	15	38	1.88
59865--59995	51	2.5	53	85	8	187	31	25	10	32	1.90
59925--60075	81	1.9	80	86	4	216	30	27	12	29	1.93
60006--60230	52	4.4	51	80	2	234	29	25	12	32	1.92
60213--60289	28	2.7	30	88	7	108	23	32	19	24	1.97
60164--60360	107	1.8	107	81	5	245	26	26	16	30	1.97
60243--60446	78	2.6	79	80	3	214	24	28	16	29	1.97
70938--70994	3	19.0	3	96	0	105	64	0	1	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70995--71032	3	12.7	3	100	0	76	34	0	34	31	1.58
71310--71352	14	3.0	14	89	3	68	0	18	0	81	0.69
71310--71354	15	3.1	15	83	6	65	0	20	0	80	0.72
71312--71402	27	3.6	25	75	16	80	1	25	0	73	0.90
71340--71401	23	2.7	23	82	2	70	1	27	0	70	0.96
71311--71402	11	8.5	11	72	13	57	1	25	0	73	0.89
73589--73620	16	2.0	16	100	0	64	62	18	6	12	1.50
74976--75009	10	3.3	10	88	8	50	44	0	8	47	1.34
81647--81706	24	2.5	24	83	5	68	28	5	5	61	1.38

Tables:   1

The End!