genome.fa.s2579.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2579
Parameters: 2 7 7 80 10 50 1000
Length:  47643

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1614--1659	21	2.1	22	92	4	76	91	6	2	0	0.50
1614--1651	1	38.0	1	89	0	58	94	5	0	0	0.30
1613--1651	18	2.3	18	91	8	64	92	7	0	0	0.39
2893--3105	57	3.6	59	84	9	247	30	34	17	17	1.93
2893--4101	32	37.8	32	89	3	1696	31	34	18	15	1.92
3106--3167	19	2.8	23	68	27	62	29	32	24	14	1.94
4630--4704	20	3.8	20	78	0	87	34	13	12	40	1.81
4630--4707	40	2.0	39	87	2	111	34	12	12	39	1.82
8959--9079	45	2.7	46	77	8	124	20	21	16	41	1.90
9411--9478	36	1.9	35	84	3	91	25	26	14	33	1.94
9931--9976	22	2.1	22	91	0	74	36	10	19	32	1.87
10024--10079	19	2.8	20	75	19	55	41	7	16	35	1.75
10391--10497	47	2.3	47	85	3	144	23	22	16	37	1.94
10618--10852	42	5.6	42	77	6	201	15	22	18	43	1.87
10912--11048	42	3.3	41	83	6	170	16	22	18	42	1.89
10912--11660	42	18.3	40	71	13	168	16	25	16	41	1.89
10759--11171	150	2.7	151	84	5	494	16	23	16	43	1.87
11062--11729	42	15.9	42	79	5	539	16	26	16	40	1.90
12226--12257	3	11.0	3	93	6	57	65	0	0	34	0.93
16244--16353	43	2.6	43	80	8	136	40	20	25	14	1.90
16219--16846	42	15.0	42	70	10	245	42	18	23	15	1.89
16442--16707	83	3.2	83	77	3	214	41	19	24	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16251--16749	208	2.4	211	76	7	480	42	18	24	15	1.88
16545--16868	125	2.6	126	78	7	302	44	16	22	16	1.87
16647--16877	126	1.8	124	81	7	288	43	17	22	16	1.88
16307--16922	42	14.8	41	70	8	237	42	18	23	16	1.89
17133--17268	49	2.9	47	81	8	143	44	14	19	21	1.87
17157--17268	48	2.4	45	80	8	118	43	13	20	22	1.86
22767--22833	33	2.0	33	82	5	82	31	19	25	23	1.98
30453--30506	20	2.7	20	91	5	83	33	16	20	29	1.95
31472--31659	33	5.8	32	80	5	155	22	15	29	32	1.95
31472--31659	64	2.9	66	80	4	186	22	15	29	32	1.95
31506--31661	33	4.8	33	82	5	174	23	16	28	32	1.95
37642--37760	59	2.0	59	100	0	238	36	5	18	39	1.73
38880--39224	31	11.0	31	76	3	233	10	24	35	29	1.89
39168--39245	31	2.5	31	87	4	86	15	24	33	26	1.95
39063--39266	93	2.2	93	82	1	248	12	25	32	29	1.92
43649--43768	52	2.3	52	95	0	213	28	17	19	35	1.94
43649--43786	52	2.7	52	86	4	181	28	16	20	34	1.94
43842--43908	33	2.0	33	88	0	98	40	13	11	34	1.81
43864--43888	13	1.9	13	100	0	50	32	16	16	36	1.90
43946--43987	21	2.0	21	90	0	66	35	14	14	35	1.86
44143--44181	12	3.4	11	86	10	51	2	5	5	87	0.75
45814--45869	19	2.9	19	86	2	76	35	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45866--45918	20	2.6	21	82	5	65	41	15	15	28	1.87

Tables:   1

The End!