Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold258
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5730937
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 18 of 25
Found at i:4218481 original size:10 final size:10
Alignment explanation
Indices: 4218466--4218496 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
4218456 AACATTTTTA
4218466 TATATATATT
1 TATATATATT
4218476 TATATATATT
1 TATATATATT
4218486 TATATATATT
1 TATATATATT
4218496 T
1 T
4218497 TTTCAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TATATATATT
Found at i:4221227 original size:2 final size:2
Alignment explanation
Indices: 4221220--4221250 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4221210 CGAGTCATTA
4221220 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4221251 GATTTTTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4221713 original size:2 final size:2
Alignment explanation
Indices: 4221708--4221752 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
4221698 ATTATTGAGT
4221708 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4221750 TA T
1 TA T
4221753 TAGTACCAGC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4227330 original size:23 final size:23
Alignment explanation
Indices: 4227291--4227350 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
4227281 GATTTTATTA
*
4227291 TATTATA-ATTATATTTAAAATAT
1 TATTATATA-TATTTTTAAAATAT
*
4227314 TATTATATATATTTTTAATATAT
1 TATTATATATATTTTTAAAATAT
*
4227337 TATTAATTTATATT
1 TATT-ATATATATT
4227351 ATATAAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 23 0.72
24 9 0.28
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTATATATATTTTTAAAATAT
Found at i:4227348 original size:13 final size:12
Alignment explanation
Indices: 4227287--4227352 Score: 54
Period size: 11 Copynumber: 5.8 Consensus size: 12
4227277 ATAAGATTTT
4227287 ATTATATTA-TA
1 ATTATATTATTA
4227298 ATTATA-T-TTA
1 ATTATATTATTA
*
4227308 A-AATATTATT-
1 ATTATATTATTA
*
4227318 ATATATATTTTTA
1 AT-TATATTATTA
4227331 A-TATATTATTA
1 ATTATATTATTA
4227342 ATTTATATTAT
1 A-TTATATTAT
4227353 ATAAATTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
9 3 0.07
10 6 0.14
11 18 0.42
12 7 0.16
13 9 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTATATTATTA
Found at i:4227754 original size:21 final size:21
Alignment explanation
Indices: 4227704--4227756 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
4227694 TTTTATTATT
4227704 TTTTAATTTA-AATAATTAAA
1 TTTTAATTTATAATAATTAAA
* * * *
4227724 TTTAATATTTATATTATTTTAA
1 TTTTA-ATTTATAATAATTAAA
4227746 TTTTAATTTAT
1 TTTTAATTTAT
4227757 TAATTTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 4 0.15
21 11 0.42
22 11 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTAATTTATAATAATTAAA
Found at i:4229584 original size:17 final size:17
Alignment explanation
Indices: 4229562--4229595 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
4229552 AGTTTCTTAT
4229562 TTTATTT-TTTTGAAAAA
1 TTTATTTCTTTT-AAAAA
4229579 TTTATTTCTTTTAAAAA
1 TTTATTTCTTTTAAAAA
4229596 GACAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTATTTCTTTTAAAAA
Found at i:4234576 original size:14 final size:14
Alignment explanation
Indices: 4234557--4234606 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
4234547 CTCTGGTTGA
*
4234557 AAAAAAATCGTTTT
1 AAAAAAATCATTTT
*
4234571 -AAAAAATAATATTT
1 AAAAAAATCAT-TTT
*
4234585 AAAAAAATCATGTT
1 AAAAAAATCATTTT
4234599 AAAAAAAT
1 AAAAAAAT
4234607 AATATTCAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
13 8 0.27
14 13 0.43
15 9 0.30
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (14 bp):
AAAAAAATCATTTT
Found at i:4234600 original size:28 final size:29
Alignment explanation
Indices: 4234557--4234612 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
4234547 CTCTGGTTGA
* *
4234557 AAAAAAATCGT-TTTAAAAAATAATATTT
1 AAAAAAATCATGTTAAAAAAATAATATTT
4234585 AAAAAAATCATGTTAAAAAAATAATATT
1 AAAAAAATCATGTTAAAAAAATAATATT
4234613 CAAGTAGGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 10 0.40
29 15 0.60
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (29 bp):
AAAAAAATCATGTTAAAAAAATAATATTT
Found at i:4234683 original size:16 final size:17
Alignment explanation
Indices: 4234664--4234699 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
4234654 TTATTTTATA
*
4234664 TTATTTTTA-TAATTTT
1 TTATTTTAAGTAATTTT
4234680 TTATTTTAAGTAATTTT
1 TTATTTTAAGTAATTTT
4234697 TTA
1 TTA
4234700 ATTGAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (17 bp):
TTATTTTAAGTAATTTT
Found at i:4234695 original size:26 final size:25
Alignment explanation
Indices: 4234649--4234702 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
4234639 AAATAATACT
*
4234649 ATTTTTTATTTTATATTATTTTTATA
1 ATTTTTTATTTTATATAATTTTT-TA
4234675 ATTTTTTATTTTA-AGTAATTTTTTA
1 ATTTTTTATTTTATA-TAATTTTTTA
4234700 ATT
1 ATT
4234703 GAAATATGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (25 bp):
ATTTTTTATTTTATATAATTTTTTA
Found at i:4234966 original size:15 final size:15
Alignment explanation
Indices: 4234944--4234977 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
4234934 ACCAACCAAA
*
4234944 ATTTTTAAATATTAAT
1 ATTTTAAAAT-TTAAT
4234960 ATTTTAAAATTTAAT
1 ATTTTAAAATTTAAT
4234975 ATT
1 ATT
4234978 AATATATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTAAAATTTAAT
Found at i:4235197 original size:17 final size:17
Alignment explanation
Indices: 4235175--4235222 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
4235165 TAATTCGGTC
4235175 TTATTTAATTTAAATTA
1 TTATTTAATTTAAATTA
*
4235192 TTATTTAATAATAAA-TA
1 TTATTTAAT-TTAAATTA
4235209 TT-TTT-ATTTAAATT
1 TTATTTAATTTAAATT
4235223 TAATTATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
14 4 0.15
15 3 0.11
16 3 0.11
17 13 0.48
18 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATTTAATTTAAATTA
Found at i:4235242 original size:22 final size:22
Alignment explanation
Indices: 4235217--4235258 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
4235207 TATTTTTATT
*
4235217 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAA-TACAAAAATATA
4235239 TAAATATTAATACAAAAATA
1 TAAATATTAATACAAAAATA
4235259 ATTTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TAAATATTAATACAAAAATATA
Found at i:4239836 original size:2 final size:2
Alignment explanation
Indices: 4239829--4239858 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4239819 ATTGAAGGTA
4239829 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4239859 GTATTCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4245198 original size:90 final size:89
Alignment explanation
Indices: 4245024--4245198 Score: 305
Period size: 89 Copynumber: 2.0 Consensus size: 89
4245014 AGATCTTGTG
*
4245024 TGTGAAAATTTATTTTTAATAAAAAAATTAAAAATAAATAAAAAATTATAATGATGGAAATTATA
1 TGTGAAAATTTATTTGTAATAAAAAAATTAAAAATAAATAAAAAATTATAATGATGGAAATTATA
4245089 TTCCAATTACATAATGAATACAAA
66 TTCCAATTACATAATGAATACAAA
* *
4245113 TGTGAAAATTTATTTGTAGTATAAAAATTAAAAATAAATAAAAAATTATAATGATGGATAATTAT
1 TGTGAAAATTTATTTGTAATAAAAAAATTAAAAATAAATAAAAAATTATAATGATGGA-AATTAT
*
4245178 ATTTCAATTACATAATGAATA
65 ATTCCAATTACATAATGAATA
4245199 TAAAGTTAAA
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
89 55 0.68
90 26 0.32
ACGTcount: A:0.53, C:0.03, G:0.08, T:0.35
Consensus pattern (89 bp):
TGTGAAAATTTATTTGTAATAAAAAAATTAAAAATAAATAAAAAATTATAATGATGGAAATTATA
TTCCAATTACATAATGAATACAAA
Found at i:4246669 original size:2 final size:2
Alignment explanation
Indices: 4246662--4246694 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4246652 CAAATCCAAG
4246662 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4246695 ACATGTGCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4247799 original size:21 final size:22
Alignment explanation
Indices: 4247775--4247830 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
4247765 TATTATATTG
4247775 AATTTATATAATAGTT-AAAT-T
1 AATTTATATAATA-TTAAAATAT
*
4247796 AATTTGATTTAAT-TTAAAATAT
1 AATTT-ATATAATATTAAAATAT
*
4247818 TATTTATATAATA
1 AATTTATATAATA
4247831 AAAAATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 2 0.07
21 15 0.54
22 11 0.39
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
AATTTATATAATATTAAAATAT
Found at i:4247891 original size:42 final size:43
Alignment explanation
Indices: 4247810--4247893 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 43
4247800 TGATTTAATT
* * *
4247810 TAAAATATTATTTATATAATAAAAAATTTTATTTAATTTTAAG
1 TAAAATATAATTTATATAATAAAAAATTTAATCTAATTTTAAG
* *
4247853 TAAAATATAATTTTTTTAA-AAAAAATTTAATACT-ATTTTAA
1 TAAAATATAATTTATATAATAAAAAATTTAAT-CTAATTTTAA
4247894 TTAATAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
42 18 0.51
43 17 0.49
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (43 bp):
TAAAATATAATTTATATAATAAAAAATTTAATCTAATTTTAAG
Found at i:4248833 original size:2 final size:2
Alignment explanation
Indices: 4248826--4248858 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4248816 CAGCAGGACC
4248826 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
4248859 AATCTATCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:4252449 original size:2 final size:2
Alignment explanation
Indices: 4252442--4252477 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4252432 TTTAGCAATA
4252442 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4252478 TTGAAGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4255333 original size:2 final size:2
Alignment explanation
Indices: 4255328--4255375 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
4255318 TACCACTTTC
4255328 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4255370 AT AT AT
1 AT AT AT
4255376 GTCATCTTCC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4262214 original size:17 final size:17
Alignment explanation
Indices: 4262195--4262228 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
4262185 AAATATTAAT
4262195 AAATAAATAATATAATTA
1 AAATAAA-AATATAATTA
4262213 AAATAAAAATATAATT
1 AAATAAAAATATAATT
4262229 GCATATCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
AAATAAAAATATAATTA
Found at i:4263141 original size:25 final size:24
Alignment explanation
Indices: 4263088--4263143 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
4263078 TCAAATAAAT
* * *
4263088 ATAAAAGTAAAATTATTTTATTAA
1 ATAAAAATAAAATTATTTAATGAA
*
4263112 GTAAAAATAAATATTATTTAATGAA
1 ATAAAAATAAA-ATTATTTAATGAA
4263137 ATAAAAA
1 ATAAAAA
4263144 ATTTTACTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 9 0.35
25 17 0.65
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (24 bp):
ATAAAAATAAAATTATTTAATGAA
Found at i:4264953 original size:20 final size:20
Alignment explanation
Indices: 4264915--4264965 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
4264905 TATTTAAACA
4264915 TCAAAAAAC-AAT-T-TTTT
1 TCAAAAAACAAATATATTTT
*
4264932 TCAAAAAATAAATATATTTT
1 TCAAAAAACAAATATATTTT
*
4264952 TCAACAAACAAATA
1 TCAAAAAACAAATA
4264966 AAAATATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 8 0.29
18 3 0.11
19 1 0.04
20 16 0.57
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (20 bp):
TCAAAAAACAAATATATTTT
Found at i:4288079 original size:13 final size:13
Alignment explanation
Indices: 4288061--4288086 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4288051 TGCATTGAAA
4288061 AGTCTAGGCTTAC
1 AGTCTAGGCTTAC
4288074 AGTCTAGGCTTAC
1 AGTCTAGGCTTAC
4288087 TACAGTGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
AGTCTAGGCTTAC
Found at i:4290271 original size:29 final size:29
Alignment explanation
Indices: 4290237--4290292 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
4290227 TTCTTTTAAG
4290237 TTAATA-AATATAATAATAAT-TTATTATTT
1 TTAATATAATA-AATAA-AATATTATTATTT
*
4290266 TTAATATAGTAAATAAAATATTATTAT
1 TTAATATAATAAATAAAATATTATTAT
4290293 AAAAATAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 3 0.12
29 18 0.75
30 3 0.12
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
TTAATATAATAAATAAAATATTATTATTT
Found at i:4290582 original size:18 final size:19
Alignment explanation
Indices: 4290547--4290588 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
4290537 ATTATTATAA
*
4290547 TAATTTTATTTCACTTAAT
1 TAATTTTATTTCAATTAAT
4290566 TAATTTTATTT-AATTAAT
1 TAATTTTATTTCAATTAAT
4290584 TAATT
1 TAATT
4290589 AACTTTTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
TAATTTTATTTCAATTAAT
Found at i:4291465 original size:2 final size:2
Alignment explanation
Indices: 4291458--4291491 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
4291448 CGGAGTGAAA
*
4291458 AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4291492 TCATGAGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4292255 original size:2 final size:2
Alignment explanation
Indices: 4292248--4292287 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
4292238 GATGACTAGA
*
4292248 TC TC TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
4292288 AGAGAGGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
TC
Found at i:4293147 original size:17 final size:18
Alignment explanation
Indices: 4293125--4293169 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
4293115 ATATTTTTTA
*
4293125 TTAATTATTTAA-TATTT
1 TTAATTATTAAATTATTT
*
4293142 TTAATTATAAAATTATTT
1 TTAATTATTAAATTATTT
4293160 TTAATTATTA
1 TTAATTATTA
4293170 TTAAATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTAATTATTAAATTATTT
Found at i:4293175 original size:21 final size:21
Alignment explanation
Indices: 4293111--4293177 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
4293101 ATAAAAAATA
*
4293111 AAATATATTTTTTATTAATTATT
1 AAAT-TATTTTTAATT-ATTATT
*
4293134 TAA-TATTTTTAATTA-TA--
1 AAATTATTTTTAATTATTATT
4293151 AAATTATTTTTAATTATTATT
1 AAATTATTTTTAATTATTATT
4293172 AAATTA
1 AAATTA
4293178 AAATATAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
17 2 0.05
18 12 0.32
19 4 0.11
20 1 0.03
21 16 0.43
23 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
AAATTATTTTTAATTATTATT
Found at i:4297579 original size:31 final size:27
Alignment explanation
Indices: 4297518--4297588 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 27
4297508 TATTATAATT
*
4297518 AAATTTAAAATATTATATAATTTTATA
1 AAATTTAAAATATAATATAATTTTATA
4297545 AAATTTAAAATATAATAATTAATGTTATATA
1 AAATTTAAAATATAAT-A-TAAT-TT-TATA
*
4297576 AAATTTAATATAT
1 AAATTTAAAATAT
4297589 TTATATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
27 15 0.39
28 1 0.03
29 4 0.11
30 2 0.05
31 16 0.42
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (27 bp):
AAATTTAAAATATAATATAATTTTATA
Found at i:4306638 original size:13 final size:13
Alignment explanation
Indices: 4306620--4306657 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
4306610 TTTTTAAAAA
4306620 ATTTATATTTAAT
1 ATTTATATTTAAT
*
4306633 ATTTATATTTGAT
1 ATTTATATTTAAT
*
4306646 ATCTATATTTAA
1 ATTTATATTTAA
4306658 ATAAAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (13 bp):
ATTTATATTTAAT
Found at i:4314996 original size:24 final size:23
Alignment explanation
Indices: 4314961--4315005 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
4314951 ATTTATATTT
4314961 ATTTAAATTT-AATTTGATTTAAA
1 ATTTAAATTTAAATTT-ATTTAAA
*
4314984 ATTTTAATATTAAATTTATTTA
1 ATTTAAAT-TTAAATTTATTTA
4315006 TATTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 7 0.37
25 5 0.26
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
ATTTAAATTTAAATTTATTTAAA
Found at i:4315105 original size:35 final size:35
Alignment explanation
Indices: 4315021--4315106 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 35
4315011 ATAAATAACT
4315021 AATTTAAATTTATTT-ATATTATTTTTAAAAATTAA
1 AATTTAAA-TTATTTAATATTATTTTTAAAAATTAA
* ** *
4315056 AATTTTAATTATTTAATATT-TTTATTAAATTTTGA
1 AATTTAAATTATTTAATATTATTT-TTAAAAATTAA
*
4315091 AATTTAAATAATTTAA
1 AATTTAAATTATTTAA
4315107 CATAAAATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
34 9 0.21
35 34 0.79
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (35 bp):
AATTTAAATTATTTAATATTATTTTTAAAAATTAA
Found at i:4315372 original size:19 final size:20
Alignment explanation
Indices: 4315348--4315390 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
4315338 ATAAAATTTA
4315348 TTTAAATATTAAA-TAA-AAT
1 TTTAAAT-TTAAACTAATAAT
4315367 TTTAAATTTAAACTAATAAT
1 TTTAAATTTAAACTAATAAT
4315387 TTTA
1 TTTA
4315391 CTCATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.23
19 10 0.45
20 7 0.32
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTAAATTTAAACTAATAAT
Found at i:4315515 original size:17 final size:17
Alignment explanation
Indices: 4315495--4315528 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4315485 TAAAAAAATA
4315495 TATATTAAATATATATT
1 TATATTAAATATATATT
*
4315512 TATATTTAATATATATT
1 TATATTAAATATATATT
4315529 ATTAAATTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTAAATATATATT
Found at i:4318964 original size:37 final size:37
Alignment explanation
Indices: 4318909--4318990 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
4318899 CAACGTACTT
4318909 AAAATTT-AAATATTTAACTTTT-ATACATATCTAAAA
1 AAAATTTCAAATATTTAACTTTTGA-ACATATCTAAAA
* *
4318945 AAAATTTCAAATGTTTAACTTTTGAACATATCTAATA
1 AAAATTTCAAATATTTAACTTTTGAACATATCTAAAA
*
4318982 AAATTTTCA
1 AAAATTTCA
4318991 TTTCAATCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
36 7 0.17
37 33 0.80
38 1 0.02
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (37 bp):
AAAATTTCAAATATTTAACTTTTGAACATATCTAAAA
Found at i:4321945 original size:2 final size:2
Alignment explanation
Indices: 4321938--4321977 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
4321928 TCTTCATCTC
* *
4321938 AT AT AT AT -T AC AT AT AT AT AT AT AT AT AT AG AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4321978 ACCATATCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Found at i:4322999 original size:19 final size:19
Alignment explanation
Indices: 4322977--4323039 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
4322967 AATCTTATAT
4322977 ATTA-ATTTTATTAAATTAA
1 ATTATATTTTATTAAATT-A
*
4322996 ATTATTATTTTTATT-ATTTA
1 ATTA-TA-TTTTATTAAATTA
* *
4323016 ATTATATTTTAATAAAATA
1 ATTATATTTTATTAAATTA
4323035 ATTAT
1 ATTAT
4323040 TTTATTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
18 6 0.17
19 14 0.39
20 5 0.14
21 4 0.11
22 7 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTATATTTTATTAAATTA
Found at i:4323039 original size:27 final size:27
Alignment explanation
Indices: 4323007--4323067 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
4322997 TTATTATTTT
4323007 TATTATTTAATTATATTTTAATAAA-A
1 TATTATTTAATTATATTTTAATAAATA
*
4323033 TAATTATTTTATTATATTTTAATAAATA
1 T-ATTATTTAATTATATTTTAATAAATA
4323061 TATTATT
1 TATTATT
4323068 AATGTCTTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 29 0.91
28 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (27 bp):
TATTATTTAATTATATTTTAATAAATA
Found at i:4324242 original size:13 final size:13
Alignment explanation
Indices: 4324226--4324250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4324216 CTTTTTCTTT
4324226 TCTTTTTTTTATC
1 TCTTTTTTTTATC
4324239 TCTTTTTTTTAT
1 TCTTTTTTTTAT
4324251 ATTGTGGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TCTTTTTTTTATC
Found at i:4326366 original size:2 final size:2
Alignment explanation
Indices: 4326359--4326386 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4326349 TAATTGGTTG
4326359 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
4326387 ATATATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:4326391 original size:2 final size:2
Alignment explanation
Indices: 4326386--4326416 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4326376 TCTCTCTCTC
4326386 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4326417 GTTGAGGATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4332307 original size:2 final size:2
Alignment explanation
Indices: 4332296--4332334 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
4332286 GTACACCTTT
4332296 GA GA GA -A GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
4332335 TGAAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:4338507 original size:27 final size:28
Alignment explanation
Indices: 4338445--4338507 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
4338435 TTGTATAAAC
*
4338445 TTTTAAAACAATCAATATTTTTTTTTAA
1 TTTTAAAACAATCAATATTTTGTTTTAA
** *
4338473 TTACAAAA-AAT-AATGTTATTGTTTTAA
1 TTTTAAAACAATCAATATT-TTGTTTTAA
4338500 TTTTAAAA
1 TTTTAAAA
4338508 TCACTTGTCA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 5 0.18
27 17 0.61
28 6 0.21
ACGTcount: A:0.43, C:0.05, G:0.03, T:0.49
Consensus pattern (28 bp):
TTTTAAAACAATCAATATTTTGTTTTAA
Found at i:4341030 original size:21 final size:20
Alignment explanation
Indices: 4341006--4341045 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
4340996 TATATTTTAA
*
4341006 TTAAATAATAATATTTTATTT
1 TTAAAAAATAA-ATTTTATTT
*
4341027 TTAAAAAATTAATTTTATT
1 TTAAAAAATAAATTTTATT
4341046 ATAATATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TTAAAAAATAAATTTTATTT
Found at i:4341368 original size:21 final size:22
Alignment explanation
Indices: 4341344--4341395 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
4341334 TATTCAATTA
4341344 TAATATATAATTAAATA-AAAT
1 TAATATATAATTAAATATAAAT
4341365 TAATCAT-TAA-TAAATATAAAT
1 TAAT-ATATAATTAAATATAAAT
*
4341386 T-TTATATAAT
1 TAATATATAAT
4341396 ATTTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
19 2 0.08
20 10 0.38
21 12 0.46
22 2 0.08
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
TAATATATAATTAAATATAAAT
Found at i:4341497 original size:68 final size:69
Alignment explanation
Indices: 4341369--4341504 Score: 170
Period size: 68 Copynumber: 2.0 Consensus size: 69
4341359 TAAAATTAAT
* * * * * *
4341369 CATTAATAAATATAAATTTTATATAATATTTTTATTAACTTTATACGATTTAAAATTTATAACGA
1 CATTAATAAATATAAACTTTATATAATATTTTAATTAAATATATACAATTCAAAATTTATAACGA
4341434 ATTA
66 ATTA
*
4341438 CATT-ATAAATATGAACTTTATATAATATTTTAATTAAAAATATATA-AATTCAAAA-TTATAAC
1 CATTAATAAATATAAACTTTATATAATATTTTAATT--AAATATATACAATTCAAAATTTATAAC
4341500 GAATT
64 GAATT
4341505 CCAGTAAGGT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
68 40 0.69
69 11 0.19
70 7 0.12
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (69 bp):
CATTAATAAATATAAACTTTATATAATATTTTAATTAAATATATACAATTCAAAATTTATAACGA
ATTA
Found at i:4351520 original size:24 final size:24
Alignment explanation
Indices: 4351492--4351539 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
4351482 GTTGCCTCCG
4351492 TCTCTTCTTAGCTAAAATTAAAGT
1 TCTCTTCTTAGCTAAAATTAAAGT
*
4351516 TCTCTTCTTGGCTAAAATTAAAGT
1 TCTCTTCTTAGCTAAAATTAAAGT
4351540 GCCATCCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (24 bp):
TCTCTTCTTAGCTAAAATTAAAGT
Found at i:4358852 original size:17 final size:17
Alignment explanation
Indices: 4358804--4358848 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
4358794 AATTTATACA
*
4358804 TTTAAATATTGAATAAAC
1 TTTATATATT-AATAAAC
4358822 TTTATATATTAATAAA-
1 TTTATATATTAATAAAC
4358838 TTT-TATATTAA
1 TTTATATATTAA
4358849 AATATATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 8 0.31
16 3 0.12
17 6 0.23
18 9 0.35
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
TTTATATATTAATAAAC
Found at i:4359168 original size:47 final size:48
Alignment explanation
Indices: 4359021--4359208 Score: 288
Period size: 48 Copynumber: 3.9 Consensus size: 48
4359011 GCAAAACCAT
* * * *
4359021 ATTGAGCAGCAAGAGAAAGGTTGGTAGTTGGCGTTTCGGAAACGTATC
1 ATTGAGCAGCAAGAGAGAGGCTGGTAGGTGGCGTTTTGGAAACGTATC
* * *
4359069 ATTGATCAGCAAGAGAGCGGCTGGTAGGTGGCGTTTTGGAAACGTATT
1 ATTGAGCAGCAAGAGAGAGGCTGGTAGGTGGCGTTTTGGAAACGTATC
*
4359117 ATTGAGCAGCAAGAGAGAGGCTGGT-GGTGGCGTTTTGGAAACGTACC
1 ATTGAGCAGCAAGAGAGAGGCTGGTAGGTGGCGTTTTGGAAACGTATC
*
4359164 ATTGAGCAGCAAGAGAGAGGCTGGTAGGTGGCGTTCTGGAAACGT
1 ATTGAGCAGCAAGAGAGAGGCTGGTAGGTGGCGTTTTGGAAACGT
4359209 CGCTAAAGCC
Statistics
Matches: 127, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 45 0.35
48 82 0.65
ACGTcount: A:0.27, C:0.13, G:0.37, T:0.23
Consensus pattern (48 bp):
ATTGAGCAGCAAGAGAGAGGCTGGTAGGTGGCGTTTTGGAAACGTATC
Found at i:4359186 original size:95 final size:96
Alignment explanation
Indices: 4359020--4359208 Score: 299
Period size: 95 Copynumber: 2.0 Consensus size: 96
4359010 TGCAAAACCA
* * * *
4359020 TATTGAGCAGCAAGAGAAAGGTTGGTAGTTGGCGTTTCGGAAACGTATCATTGATCAGCAAGAGA
1 TATTGAGCAGCAAGAGAAAGGCTGGTAGGTGGCGTTTCGGAAACGTACCATTGAGCAGCAAGAGA
* *
4359085 GCGGCTGGTAGGTGGCGTTTTGGAAACGTAT
66 GAGGCTGGTAGGTGGCGTTCTGGAAACGTAT
* *
4359116 TATTGAGCAGCAAGAGAGAGGCTGGT-GGTGGCGTTTTGGAAACGTACCATTGAGCAGCAAGAGA
1 TATTGAGCAGCAAGAGAAAGGCTGGTAGGTGGCGTTTCGGAAACGTACCATTGAGCAGCAAGAGA
4359180 GAGGCTGGTAGGTGGCGTTCTGGAAACGT
66 GAGGCTGGTAGGTGGCGTTCTGGAAACGT
4359209 CGCTAAAGCC
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
95 61 0.72
96 24 0.28
ACGTcount: A:0.26, C:0.13, G:0.37, T:0.24
Consensus pattern (96 bp):
TATTGAGCAGCAAGAGAAAGGCTGGTAGGTGGCGTTTCGGAAACGTACCATTGAGCAGCAAGAGA
GAGGCTGGTAGGTGGCGTTCTGGAAACGTAT
Found at i:4360552 original size:2 final size:2
Alignment explanation
Indices: 4360545--4360569 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4360535 TTTGATAGTT
4360545 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4360570 TTGGTCTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4360830 original size:2 final size:2
Alignment explanation
Indices: 4360823--4360862 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
4360813 TAACATACTC
4360823 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4360863 CAATCAAAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4361761 original size:2 final size:2
Alignment explanation
Indices: 4361756--4361795 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
4361746 ATTATATAAC
* * *
4361756 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT TT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4361796 GAGCAGATGG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (2 bp):
AT
Found at i:4365338 original size:2 final size:2
Alignment explanation
Indices: 4365333--4365359 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4365323 GGTATATAAT
4365333 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
4365360 TTAAGCATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4370083 original size:1 final size:1
Alignment explanation
Indices: 4369932--4370076 Score: 272
Period size: 1 Copynumber: 145.0 Consensus size: 1
4369922 CTGTAACCCT
*
4369932 CCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
4369997 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
4370062 CCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCC
4370077 ATCCCCCGGC
Statistics
Matches: 140, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
1 140 1.00
ACGTcount: A:0.01, C:0.99, G:0.00, T:0.01
Consensus pattern (1 bp):
C
Found at i:4376010 original size:6 final size:6
Alignment explanation
Indices: 4375999--4376023 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4375989 CTTTTTCTCT
4375999 CTTTCC CTTTCC CTTTCC CTTTCC C
1 CTTTCC CTTTCC CTTTCC CTTTCC C
4376024 CCCAACCTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
CTTTCC
Found at i:4376576 original size:40 final size:39
Alignment explanation
Indices: 4376463--4376576 Score: 95
Period size: 34 Copynumber: 3.1 Consensus size: 39
4376453 TAAATATTAA
* * *
4376463 ATTTAT-TTATTTAATTTTAAAA-ATAATAAAAATT-ACT
1 ATTTATATTATTAAATTTTAAAACATAA-ATAATTTAACT
*
4376500 -TTTATATTATTAAAATTTT--AAC-T-AAT-TTTTAA-T
1 ATTTATATTATT-AAATTTTAAAACATAAATAATTTAACT
4376533 ATTTATATTATTAAATTTTAAAACATAAATAATTTAACTT
1 ATTTATATTATTAAATTTTAAAACATAAATAATTTAAC-T
4376573 ATTT
1 ATTT
4376577 TAATATTTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 21
0.70 0.06 0.24
Matches are distributed among these distances:
33 10 0.17
34 13 0.22
35 4 0.07
36 9 0.15
37 8 0.13
38 11 0.18
40 5 0.08
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (39 bp):
ATTTATATTATTAAATTTTAAAACATAAATAATTTAACT
Found at i:4377259 original size:2 final size:2
Alignment explanation
Indices: 4377252--4377277 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4377242 ACTTTTTCAA
4377252 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4377278 GTACTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4387247 original size:21 final size:22
Alignment explanation
Indices: 4387217--4387257 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
4387207 TTTTATTAAT
4387217 ATTTGAATAAAAATTAAATTGA
1 ATTTGAATAAAAATTAAATTGA
4387239 ATTT-AATAAAAATTAAATT
1 ATTTGAATAAAAATTAAATT
4387258 TAACATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (22 bp):
ATTTGAATAAAAATTAAATTGA
Found at i:4387627 original size:2 final size:2
Alignment explanation
Indices: 4387620--4387659 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
4387610 CGTCCCATCT
4387620 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
4387660 CCTTTCCGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:4391760 original size:104 final size:104
Alignment explanation
Indices: 4391580--4391783 Score: 399
Period size: 104 Copynumber: 2.0 Consensus size: 104
4391570 CGGACATCCC
*
4391580 ATTATCGTCAATTGAGGTAATAAAATAAGTAATCATGCATTTTGTAAATGTAGGACATTTTTATA
1 ATTATCGTCAATTGAGGTAATAAAATAAGTAATCATGCATTATGTAAATGTAGGACATTTTTATA
4391645 TGTATTTTGCTATTCATTCAGTTGAGGCAATTGAGGAAA
66 TGTATTTTGCTATTCATTCAGTTGAGGCAATTGAGGAAA
4391684 ATTATCGTCAATTGAGGTAATAAAATAAGTAATCATGCATTATGTAAATGTAGGACATTTTTATA
1 ATTATCGTCAATTGAGGTAATAAAATAAGTAATCATGCATTATGTAAATGTAGGACATTTTTATA
4391749 TGTATTTTGCTATTCATTCAGTTGAGGCAATTGAG
66 TGTATTTTGCTATTCATTCAGTTGAGGCAATTGAG
4391784 CTTTCCTCTA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 99 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (104 bp):
ATTATCGTCAATTGAGGTAATAAAATAAGTAATCATGCATTATGTAAATGTAGGACATTTTTATA
TGTATTTTGCTATTCATTCAGTTGAGGCAATTGAGGAAA
Found at i:4392471 original size:2 final size:2
Alignment explanation
Indices: 4392464--4392504 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
4392454 AGATGAGTTT
4392464 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4392505 TGTTAGTGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4393307 original size:21 final size:21
Alignment explanation
Indices: 4393282--4393326 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4393272 ATTGAAATTA
*
4393282 AAAG-TTGAATATTTTATTAAT
1 AAAGTTTGAAT-TTTAATTAAT
*
4393303 AAAGTTTGAATTTTAATTATT
1 AAAGTTTGAATTTTAATTAAT
4393324 AAA
1 AAA
4393327 ATTAAAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (21 bp):
AAAGTTTGAATTTTAATTAAT
Found at i:4394758 original size:153 final size:153
Alignment explanation
Indices: 4394480--4394786 Score: 587
Period size: 153 Copynumber: 2.0 Consensus size: 153
4394470 TTCCTCCTTC
4394480 TGGTCCACTCTTGCTACGTTAGGATTTTGAGTGCCAGGCTGAGATACAGAAAGAAAAATTAAAAC
1 TGGTCCACTCTTGCTACGTTAGGATTTTGAGTGCCAGGCTGAGATACAGAAAGAAAAATTAAAAC
*
4394545 ACGCATTTCTGGCATCACTATGCAACAAAACCAATAAACTCAAACACCCCCAAAGTACTTCGTGG
66 ACACATTTCTGGCATCACTATGCAACAAAACCAATAAACTCAAACACCCCCAAAGTACTTCGTGG
4394610 AGAACCAAGCAATTTAAACCCAG
131 AGAACCAAGCAATTTAAACCCAG
*
4394633 TGGTCCACTCTTGCTACGTTAGGATTTTGAGTGCCAGGCTGAGATACAGAAATAAAAATTAAAAC
1 TGGTCCACTCTTGCTACGTTAGGATTTTGAGTGCCAGGCTGAGATACAGAAAGAAAAATTAAAAC
*
4394698 ATACATTTCTGGCATCACTATGCAACAAAACCAATAAACTCAAACACCCCCAAAGTACTTCGTGG
66 ACACATTTCTGGCATCACTATGCAACAAAACCAATAAACTCAAACACCCCCAAAGTACTTCGTGG
4394763 AGAACCAAGCAATTTAAACCCAG
131 AGAACCAAGCAATTTAAACCCAG
4394786 T
1 T
4394787 TGCTTACTGG
Statistics
Matches: 151, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
153 151 1.00
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.22
Consensus pattern (153 bp):
TGGTCCACTCTTGCTACGTTAGGATTTTGAGTGCCAGGCTGAGATACAGAAAGAAAAATTAAAAC
ACACATTTCTGGCATCACTATGCAACAAAACCAATAAACTCAAACACCCCCAAAGTACTTCGTGG
AGAACCAAGCAATTTAAACCCAG
Found at i:4399930 original size:19 final size:21
Alignment explanation
Indices: 4399908--4399952 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
4399898 TTTATATTTT
4399908 TATATTATATAAA-TA-TAAA
1 TATATTATATAAATTATTAAA
4399927 TATA--ATATAAATTATTAAA
1 TATATTATATAAATTATTAAA
*
4399946 AATATTA
1 TATATTA
4399953 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 6
0.75 0.04 0.21
Matches are distributed among these distances:
17 7 0.33
18 2 0.10
19 11 0.52
21 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TATATTATATAAATTATTAAA
Found at i:4400692 original size:2 final size:2
Alignment explanation
Indices: 4400685--4400714 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4400675 GTATTTTGAA
4400685 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4400715 TGATAAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4401378 original size:2 final size:2
Alignment explanation
Indices: 4401371--4401408 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
4401361 TGATTTGATA
4401371 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4401409 ATAAAATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4401426 original size:27 final size:29
Alignment explanation
Indices: 4401390--4401467 Score: 81
Period size: 27 Copynumber: 2.8 Consensus size: 29
4401380 TATATATATA
*
4401390 TATATATATATATATTATAATAAAATT-T
1 TATATTTATATATATTATAATAAAATTAT
* * *
4401418 T-TATTTATATAAATTTTAAT-ATATTAT
1 TATATTTATATATATTATAATAAAATTAT
*
4401445 TATATTTATATCCTATTATAATA
1 TATATTTATAT-ATATTATAATA
4401468 TATATTATAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
26 4 0.10
27 18 0.46
28 10 0.26
29 7 0.18
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (29 bp):
TATATTTATATATATTATAATAAAATTAT
Found at i:4403891 original size:12 final size:12
Alignment explanation
Indices: 4403874--4403900 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
4403864 TAATCCTTTA
4403874 TTTTTTTATTTT
1 TTTTTTTATTTT
4403886 TTTTTTTATTTT
1 TTTTTTTATTTT
4403898 TTT
1 TTT
4403901 ACCATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.00, T:0.93
Consensus pattern (12 bp):
TTTTTTTATTTT
Found at i:4403908 original size:20 final size:20
Alignment explanation
Indices: 4403870--4403908 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4403860 GTATTAATCC
***
4403870 TTTATTTTTTTATTTTTTTT
1 TTTATTTTTTTACCATTTTT
4403890 TTTATTTTTTTACCATTTT
1 TTTATTTTTTTACCATTTT
4403909 CAGCCGCTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTATTTTTTTACCATTTTT
Found at i:4405491 original size:26 final size:25
Alignment explanation
Indices: 4405443--4405492 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
4405433 ACAAAATGAG
*
4405443 TTTTTTTTTTTTAAAGCCTTAATAA
1 TTTTTTTTTTTTAAAGCCATAATAA
**
4405468 TTTTTTTTTTTATAAATTCATAATA
1 TTTTTTTTTTT-TAAAGCCATAATA
4405493 GAGAAAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTTTTTTTTTTAAAGCCATAATAA
Found at i:4407895 original size:2 final size:2
Alignment explanation
Indices: 4407888--4407920 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4407878 TTCCCATGGA
4407888 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4407921 ATTTAAGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4408628 original size:2 final size:2
Alignment explanation
Indices: 4408623--4408652 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4408613 TTGTTTCATG
4408623 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4408653 ATAATTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4409076 original size:3 final size:3
Alignment explanation
Indices: 4409068--4409093 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
4409058 TGGTTAGTTG
4409068 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
4409094 TAGCCCATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:4409744 original size:24 final size:25
Alignment explanation
Indices: 4409695--4409744 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
4409685 AATAAAACAC
*
4409695 TTGTCGTTATAAATAATGTATCTGT
1 TTGTAGTTATAAATAATGTATCTGT
* *
4409720 TTGTAGTTATAATTAA-GTATTTGT
1 TTGTAGTTATAAATAATGTATCTGT
4409744 T
1 T
4409745 GTGTTTTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (25 bp):
TTGTAGTTATAAATAATGTATCTGT
Found at i:4413600 original size:5 final size:5
Alignment explanation
Indices: 4413590--4413614 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
4413580 TTTTGCCGCA
4413590 AATAG AATAG AATAG AATAG AATAG
1 AATAG AATAG AATAG AATAG AATAG
4413615 GAGTCCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AATAG
Found at i:4415536 original size:3 final size:3
Alignment explanation
Indices: 4415528--4415580 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
4415518 GACTTTAGAT
4415528 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4415576 ATA AT
1 ATA AT
4415581 TTGTCGAGGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:4416550 original size:3 final size:3
Alignment explanation
Indices: 4416542--4416566 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
4416532 GCAACAAGGA
4416542 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
4416567 GGATAACCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:4421898 original size:23 final size:23
Alignment explanation
Indices: 4421869--4421933 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
4421859 TAACTAATTT
4421869 ATATAATATTTTTAAGAGTTAAA
1 ATATAATATTTTTAAGAGTTAAA
* ** * *
4421892 ATTTAATAAATTTAAAATTTAAA
1 ATATAATATTTTTAAGAGTTAAA
4421915 ATAT-AT-TTATTTAAGAGTT
1 ATATAATATT-TTTAAGAGTT
4421934 TATTAAATTA
Statistics
Matches: 31, Mismatches: 10, Indels: 3
0.70 0.23 0.07
Matches are distributed among these distances:
22 10 0.32
23 21 0.68
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (23 bp):
ATATAATATTTTTAAGAGTTAAA
Found at i:4422037 original size:20 final size:20
Alignment explanation
Indices: 4422007--4422066 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
4421997 AAATTGATTC
* *
4422007 AAATAAATATTTATTTATTAA
1 AAATAAATATTAATATA-TAA
4422028 AAAT-AATATTAATATATAA
1 AAATAAATATTAATATATAA
** *
4422047 AAATTTATATAAATATATAA
1 AAATAAATATTAATATATAA
4422067 TATATTATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
19 7 0.21
20 23 0.68
21 4 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AAATAAATATTAATATATAA
Found at i:4422074 original size:20 final size:20
Alignment explanation
Indices: 4422033--4422106 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 20
4422023 ATTAAAAATA
* *
4422033 ATATTAATATATAA-AAATTT
1 ATATAAATATATAATATA-TT
4422053 ATATAAATATATAATATATT
1 ATATAAATATATAATATATT
*
4422073 ATATATATGATATATAATTTTATT
1 ATATA-A--ATATATAA-TATATT
*
4422097 ATTTAAATAT
1 ATATAAATAT
4422107 TAAAAGAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
20 20 0.44
21 7 0.16
23 9 0.20
24 9 0.20
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (20 bp):
ATATAAATATATAATATATT
Found at i:4426160 original size:17 final size:17
Alignment explanation
Indices: 4426138--4426171 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4426128 AAACTTAAAT
4426138 TAACATAATTAAATTTG
1 TAACATAATTAAATTTG
4426155 TAACATAATTAAATTTG
1 TAACATAATTAAATTTG
4426172 AATATTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (17 bp):
TAACATAATTAAATTTG
Found at i:4432409 original size:2 final size:2
Alignment explanation
Indices: 4432402--4432433 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
4432392 GGCGTTTAAC
*
4432402 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4432434 TTTCTATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4437610 original size:18 final size:19
Alignment explanation
Indices: 4437575--4437612 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
4437565 TCAATTATTT
4437575 TCATAAAATTTAAAAAAAA
1 TCATAAAATTTAAAAAAAA
*
4437594 TCATAAAA-TTAAGAAAAA
1 TCATAAAATTTAAAAAAAA
4437612 T
1 T
4437613 ATATAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.66, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
TCATAAAATTTAAAAAAAA
Found at i:4443315 original size:13 final size:13
Alignment explanation
Indices: 4443276--4443327 Score: 59
Period size: 13 Copynumber: 4.0 Consensus size: 13
4443266 AATGTGAGTC
4443276 TAATTTATAAATT
1 TAATTTATAAATT
* **
4443289 TAATATATTGATT
1 TAATTTATAAATT
*
4443302 TGATTTATAAATT
1 TAATTTATAAATT
*
4443315 TAATTCATAAATT
1 TAATTTATAAATT
4443328 ATATCTTATA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (13 bp):
TAATTTATAAATT
Found at i:4448731 original size:3 final size:3
Alignment explanation
Indices: 4448723--4448752 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
4448713 TACTGCATGC
*
4448723 TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4448753 CAACTTATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4448883 original size:2 final size:2
Alignment explanation
Indices: 4448876--4448901 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4448866 TTATGATGGC
4448876 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4448902 TTGTATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4449677 original size:2 final size:2
Alignment explanation
Indices: 4449670--4449695 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4449660 AAAGCTATAG
4449670 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
4449696 GTGCCGCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:4450255 original size:5 final size:5
Alignment explanation
Indices: 4450245--4450269 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
4450235 TATTCGGCTT
4450245 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
4450270 GGATTATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:4450547 original size:3 final size:3
Alignment explanation
Indices: 4450539--4450567 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
4450529 TGGTATTGTG
4450539 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
4450568 TAAGCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:4451632 original size:4 final size:4
Alignment explanation
Indices: 4451623--4451652 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
4451613 AAAGAGAAGG
4451623 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
4451653 GGAGATGGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:4459790 original size:2 final size:2
Alignment explanation
Indices: 4459783--4459807 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4459773 TTTTGAGGTT
4459783 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4459808 CAAGTTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4460471 original size:2 final size:2
Alignment explanation
Indices: 4460464--4460512 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
4460454 AGATATTAAC
*
4460464 AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4460506 AT AT AT A
1 AT AT AT A
4460513 CACACACACA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4463840 original size:19 final size:19
Alignment explanation
Indices: 4463816--4463860 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
4463806 TGATACACTA
4463816 AAAAAATAAAGA-AAGAAAG
1 AAAAAATAAAGATAAG-AAG
*
4463835 AAAAAAAAAAGATAAGAAG
1 AAAAAATAAAGATAAGAAG
4463854 AAAAAAT
1 AAAAAAT
4463861 GCAAATGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 20 0.87
20 3 0.13
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (19 bp):
AAAAAATAAAGATAAGAAG
Found at i:4465184 original size:18 final size:18
Alignment explanation
Indices: 4465143--4465184 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
4465133 AAGCAGTCCA
4465143 TCAAAAAATAAACACATT
1 TCAAAAAATAAACACATT
* *
4465161 TTAAAAAATAATCTACA-T
1 TCAAAAAATAAAC-ACATT
4465179 TCAAAA
1 TCAAAA
4465185 TATTTAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (18 bp):
TCAAAAAATAAACACATT
Found at i:4481837 original size:23 final size:25
Alignment explanation
Indices: 4481811--4481857 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
4481801 AATATATATT
4481811 AATTTATTA-ATTTT-AT-TTAATAA
1 AATTT-TTACATTTTAATATTAATAA
4481834 AATTTTTACATTTTAATATTAATA
1 AATTTTTACATTTTAATATTAATA
4481858 TATAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 3 0.14
23 10 0.48
24 2 0.10
25 6 0.29
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
AATTTTTACATTTTAATATTAATAA
Found at i:4481898 original size:17 final size:17
Alignment explanation
Indices: 4481857--4481898 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
4481847 TAATATTAAT
4481857 ATATAAA-ATAATTATA
1 ATATAAATATAATTATA
*
4481873 A-AAATAATATAATTATA
1 ATATA-AATATAATTATA
4481890 ATATAAATA
1 ATATAAATA
4481899 AATAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
15 2 0.10
16 3 0.14
17 14 0.67
18 2 0.10
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATATAAATATAATTATA
Found at i:4483504 original size:29 final size:28
Alignment explanation
Indices: 4483472--4483527 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
4483462 ATAACAAATT
4483472 TAATTTTATATTAATTTTAA-TAAATTAAA
1 TAATTTTATATT--TTTTAATTAAATTAAA
*
4483501 TAATTTTTTATTTTTTAATTAAATTAA
1 TAATTTTATATTTTTTAATTAAATTAA
4483528 TATTATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 6 0.24
28 8 0.32
29 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TAATTTTATATTTTTTAATTAAATTAAA
Found at i:4484699 original size:16 final size:15
Alignment explanation
Indices: 4484680--4484710 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
4484670 TTTTATGAGT
4484680 AATTTAAAATATTTAA
1 AATTTAAAAT-TTTAA
4484696 AATTTAAAATTTTAA
1 AATTTAAAATTTTAA
4484711 CAAATAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATTTAAAATTTTAA
Found at i:4492241 original size:13 final size:13
Alignment explanation
Indices: 4492223--4492251 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
4492213 TAGGGCAAGA
4492223 AAAATTATGTTAC
1 AAAATTATGTTAC
4492236 AAAATTATGTTAC
1 AAAATTATGTTAC
4492249 AAA
1 AAA
4492252 TTCTACACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (13 bp):
AAAATTATGTTAC
Found at i:4492907 original size:2 final size:2
Alignment explanation
Indices: 4492900--4492934 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4492890 AATAAAACAA
4492900 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
4492935 AAAAAACAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:4494946 original size:20 final size:22
Alignment explanation
Indices: 4494923--4494962 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
4494913 AAAAAACACC
*
4494923 TTGAA-TATATTAAA-AATTTT
1 TTGAATTAAATTAAATAATTTT
4494943 TTGAATTAAATTAAATAATT
1 TTGAATTAAATTAAATAATT
4494963 ATCTAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 8 0.47
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (22 bp):
TTGAATTAAATTAAATAATTTT
Found at i:4500206 original size:28 final size:28
Alignment explanation
Indices: 4500165--4500221 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
4500155 TTTTGGCACG
*
4500165 AAGAGAGCAGAGGTACAAAAAACCTCTT
1 AAGAGAGCAAAGGTACAAAAAACCTCTT
4500193 AAGAGAGCAAAGGTACAAAAAACCTCTT
1 AAGAGAGCAAAGGTACAAAAAACCTCTT
4500221 A
1 A
4500222 CAAAGCTAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.49, C:0.18, G:0.19, T:0.14
Consensus pattern (28 bp):
AAGAGAGCAAAGGTACAAAAAACCTCTT
Found at i:4505729 original size:2 final size:2
Alignment explanation
Indices: 4505722--4505750 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4505712 TGTTAATCCT
4505722 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4505751 TTGGAGGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4506313 original size:21 final size:21
Alignment explanation
Indices: 4506289--4506340 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
4506279 AAATCAAGTT
*
4506289 AAAAATTATCAAAATTATTTA
1 AAAAATTATCAAAATTATATA
*
4506310 AAAAATTAAT-AATATTATATA
1 AAAAATT-ATCAAAATTATATA
*
4506331 AAATATTATC
1 AAAAATTATC
4506341 GATATTTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAAATTATCAAAATTATATA
Found at i:4509414 original size:24 final size:24
Alignment explanation
Indices: 4509382--4509430 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
4509372 ATTTAAATCG
*
4509382 TAATGTAACTTTAAAAATATGGCA
1 TAATATAACTTTAAAAATATGGCA
4509406 TAATATAACTTTAAAAATATGGCA
1 TAATATAACTTTAAAAATATGGCA
4509430 T
1 T
4509431 GTAAATTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.08, G:0.10, T:0.35
Consensus pattern (24 bp):
TAATATAACTTTAAAAATATGGCA
Found at i:4513959 original size:25 final size:25
Alignment explanation
Indices: 4513931--4513985 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
4513921 ATTTAACACG
* *
4513931 ATATAAATAAAAA-TAATAATTTTAA
1 ATAT-AATAAAAATTAAAAAATTTAA
4513956 ATAT-ATAAAAATTTAAAAAATTTAA
1 ATATAATAAAAA-TTAAAAAATTTAA
4513981 ATATA
1 ATATA
4513986 TTTATATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 7 0.28
25 18 0.72
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (25 bp):
ATATAATAAAAATTAAAAAATTTAA
Found at i:4513996 original size:16 final size:16
Alignment explanation
Indices: 4513975--4514008 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
4513965 AATTTAAAAA
4513975 ATTTAA-ATATATTTAT
1 ATTTAACATATA-TTAT
4513991 ATTTAACATATATTAT
1 ATTTAACATATATTAT
4514007 AT
1 AT
4514009 CAAATATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTAACATATATTAT
Found at i:4517780 original size:18 final size:18
Alignment explanation
Indices: 4517759--4517817 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
4517749 ATTTAAAATT
4517759 TAATTTAATTAAATTATA
1 TAATTTAATTAAATTATA
* *
4517777 TAA-TTATTTTAATGTATA
1 TAATTTAATTAAAT-TATA
4517795 -ATATTTAA-TAAATT-TA
1 TA-ATTTAATTAAATTATA
4517811 TAATTTA
1 TAATTTA
4517818 TAATTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
16 7 0.21
17 11 0.33
18 12 0.36
19 3 0.09
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTTAATTAAATTATA
Found at i:4517801 original size:41 final size:39
Alignment explanation
Indices: 4517743--4517827 Score: 95
Period size: 41 Copynumber: 2.2 Consensus size: 39
4517733 GAAACAAAGA
*
4517743 ATTTTAATTTAAAATTTAATTTAA-TTA-AATTATATAATT
1 ATTTTAATTTAAAATTTAA-TAAATTTATAATT-TATAATT
*
4517782 ATTTTAATGTATAATATTTAATAAATTTATAATTTATAATT
1 ATTTTAAT-T-TAAAATTTAATAAATTTATAATTTATAATT
4517823 -TTTTA
1 ATTTTA
4517828 TAAAAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
39 8 0.20
40 9 0.22
41 19 0.47
42 4 0.10
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (39 bp):
ATTTTAATTTAAAATTTAATAAATTTATAATTTATAATT
Found at i:4517819 original size:25 final size:24
Alignment explanation
Indices: 4517782--4517831 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
4517772 TTATATAATT
4517782 ATTTTAATGTATAATATTTAATAA
1 ATTTTAATGTATAATATTTAATAA
* * *
4517806 ATTTATAATTTATAATTTTTTATAA
1 ATTT-TAATGTATAATATTTAATAA
4517831 A
1 A
4517832 AAAAATTGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (24 bp):
ATTTTAATGTATAATATTTAATAA
Found at i:4518874 original size:2 final size:2
Alignment explanation
Indices: 4518867--4518906 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
4518857 ACCGAAATTT
4518867 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4518907 TTGAATTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4519041 original size:17 final size:17
Alignment explanation
Indices: 4519021--4519059 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
4519011 AACATATATA
4519021 AATATTAATATATATCG
1 AATATTAATATATATCG
* *
4519038 AATATTGATATATATTG
1 AATATTAATATATATCG
4519055 AATAT
1 AATAT
4519060 GTAAATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.08, T:0.44
Consensus pattern (17 bp):
AATATTAATATATATCG
Found at i:4519123 original size:15 final size:17
Alignment explanation
Indices: 4519103--4519143 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
4519093 TTTTTTAAAA
4519103 ATTAAAT-TA-ATTTAT
1 ATTAAATATATATTTAT
4519118 ATTAAATATATATTTAT
1 ATTAAATATATATTTAT
*
4519135 ATTTAATAT
1 ATTAAATAT
4519144 TTATCTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 2 0.09
17 14 0.61
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTAAATATATATTTAT
Found at i:4525536 original size:40 final size:40
Alignment explanation
Indices: 4525492--4525574 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
4525482 AGCTTGCCTC
4525492 TTCCTAGGTCTCCCTGGCAGCTGCAGCAACTTGGGTGGCT
1 TTCCTAGGTCTCCCTGGCAGCTGCAGCAACTTGGGTGGCT
4525532 TTCCTAGGTCTCCCTGGCAGCTGCAGCAACTTGGGTGGCT
1 TTCCTAGGTCTCCCTGGCAGCTGCAGCAACTTGGGTGGCT
4525572 TTC
1 TTC
4525575 TAATGATCTC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.12, C:0.30, G:0.29, T:0.29
Consensus pattern (40 bp):
TTCCTAGGTCTCCCTGGCAGCTGCAGCAACTTGGGTGGCT
Found at i:4534499 original size:45 final size:45
Alignment explanation
Indices: 4534448--4534537 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
4534438 GTGTCTAAAA
4534448 TTAACAGGTCTAGTATTAATTTGAGGTAGTGGGGTCTGCAATCGC
1 TTAACAGGTCTAGTATTAATTTGAGGTAGTGGGGTCTGCAATCGC
*
4534493 TTAACAGGTCTAGTATTAATTTGTGGTAGTGGGGTCTGCAATCGC
1 TTAACAGGTCTAGTATTAATTTGAGGTAGTGGGGTCTGCAATCGC
4534538 GCGACTCCTG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.34
Consensus pattern (45 bp):
TTAACAGGTCTAGTATTAATTTGAGGTAGTGGGGTCTGCAATCGC
Done.