genome.fa.s2581.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2581
Parameters: 2 7 7 80 10 50 1000
Length:  46988

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3169--3226	29	2.0	29	86	0	80	46	1	3	48	1.29
5536--5781	134	1.8	134	81	6	302	24	22	15	36	1.93
7102--7127	3	8.7	3	100	0	52	30	0	0	69	0.89
8717--8748	15	2.2	15	94	5	57	18	3	31	46	1.65
16274--16299	13	2.0	13	100	0	52	30	15	15	38	1.88
16360--16432	20	3.6	20	81	3	101	31	19	13	35	1.91
16338--16432	41	2.3	42	96	1	174	29	17	12	40	1.87
18787--18824	13	2.9	13	96	0	67	31	15	18	34	1.92
20905--20935	15	2.1	15	93	0	53	12	22	16	48	1.80
24997--25022	13	2.0	13	100	0	52	30	15	15	38	1.88
25083--25155	20	3.6	20	81	3	101	31	19	13	35	1.91
25061--25155	41	2.3	42	96	1	174	29	17	12	40	1.87
25556--25628	10	7.1	10	74	11	67	24	26	8	41	1.83
25556--25647	42	2.2	42	94	0	157	25	25	9	40	1.86
25733--25779	20	2.3	21	73	23	55	34	12	21	31	1.91
26346--26399	20	2.7	20	85	2	81	31	14	11	42	1.81
29430--29520	28	3.3	28	73	17	100	28	15	34	21	1.94
29438--29555	26	4.5	26	72	17	100	30	13	34	21	1.92
29422--29554	54	2.5	53	91	4	214	27	13	36	22	1.92
29522--29910	80	4.9	79	74	9	310	32	8	29	29	1.88
29530--29716	79	2.4	79	80	2	196	31	8	31	29	1.86
34715--34786	20	3.5	20	88	3	90	34	16	9	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34829--34879	21	2.4	21	86	0	75	39	15	21	23	1.92
41123--41170	8	5.4	8	77	22	51	58	2	2	37	1.22

Tables:   1

The End!