genome.fa.s2582.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2582
Parameters: 2 7 7 80 10 50 1000
Length:  45130

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3991--4205	111	2.0	109	97	1	403	51	16	6	25	1.67
5626--6287	42	15.7	42	76	8	402	37	16	29	16	1.91
5626--6293	84	7.9	83	77	7	517	37	16	29	16	1.91
6304--6841	42	12.8	42	77	3	393	39	16	28	15	1.90
6304--7744	126	11.2	124	73	9	661	38	17	28	15	1.90
5632--6841	84	14.5	82	72	10	460	38	16	29	15	1.90
6748--6947	102	2.0	101	84	4	260	38	15	26	19	1.91
6893--7746	84	10.1	84	80	3	725	38	17	28	15	1.90
6611--7067	228	2.0	228	82	5	557	40	16	27	16	1.90
6849--7746	42	21.3	42	78	4	646	38	17	28	15	1.90
8767--8810	15	3.0	15	83	3	54	11	0	4	84	0.77
16209--16275	28	2.4	28	84	0	80	25	20	29	23	1.99
16268--16389	51	2.3	52	80	5	138	33	10	22	32	1.89
18754--18779	13	2.0	13	100	0	52	38	15	15	30	1.88
18733--18799	33	2.0	33	88	0	98	43	16	14	25	1.86
18819--18886	19	3.9	18	75	23	74	38	14	10	36	1.81
18841--18865	13	1.9	13	100	0	50	32	16	16	36	1.90
18822--18884	32	2.0	32	93	0	108	36	15	11	36	1.84
19562--19651	29	3.2	29	65	23	82	22	18	32	26	1.97
19287--20307	59	17.5	59	89	4	1295	25	20	28	25	1.99
21313--21373	1	61.0	1	75	0	50	0	3	9	86	0.67
21319--21370	12	4.2	13	85	9	65	0	1	11	86	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21298--21370	37	2.0	37	86	5	103	0	8	8	83	0.81
21323--21373	16	3.2	16	84	15	70	0	1	9	88	0.60
21313--21373	30	2.1	29	87	9	88	0	3	9	86	0.67
21314--21371	25	2.3	25	88	8	82	0	3	10	86	0.69
33855--33926	28	2.6	28	86	0	90	25	19	33	22	1.97
33919--34040	51	2.3	52	80	5	138	33	10	22	32	1.89
36412--36437	13	2.0	13	100	0	52	38	15	15	30	1.88
36391--36457	33	2.0	33	88	0	98	43	16	14	25	1.86
36477--36544	19	3.9	18	73	23	74	38	14	10	36	1.81
36480--36542	32	2.0	32	93	0	108	36	15	11	36	1.84
36580--36656	21	3.7	21	89	3	111	35	15	14	35	1.88
37951--38024	20	3.6	20	78	7	94	37	13	17	31	1.89
37951--38045	42	2.3	42	94	1	165	40	12	17	29	1.87
38084--38109	13	2.0	13	100	0	52	38	15	15	30	1.88
42172--42202	15	2.1	15	93	0	53	48	16	22	12	1.80
44284--44322	13	3.0	13	96	0	69	30	17	15	35	1.91

Tables:   1

The End!