Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2587
Parameters: 2 7 7 80 10 50 1000
Length:  46680

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461--487
2
13.5
2
100
0
54
51
0
48
0
1.00
719--774
28
2.0
28
82
6
69
35
0
0
64
0.94
748--787
21
1.9
21
89
0
62
45
0
0
55
0.99
849--907
21
2.9
21
72
20
61
52
0
0
47
1.00
901--947
20
2.3
20
78
7
51
53
0
2
44
1.12
922--971
24
2.0
26
81
14
61
48
0
2
50
1.12
1090--1292
11
18.5
11
65
25
67
39
0
0
60
1.01
1089--1165
29
2.8
29
77
13
72
40
1
0
58
1.06
1121--1160
20
2.0
20
85
9
55
50
0
0
50
1.00
1134--1182
26
1.9
25
84
12
64
51
0
0
48
1.00
1147--1213
30
2.2
30
86
7
91
46
0
0
53
1.00
1197--1292
20
4.5
21
77
20
101
34
0
0
65
0.93
1201--1284
28
3.1
28
80
13
79
33
0
0
66
0.92
1197--1297
45
2.2
47
81
8
129
35
0
0
64
0.94
1563--1632
35
2.0
35
83
10
90
42
1
0
55
1.08
1800--1873
15
4.9
15
75
14
53
37
1
0
60
1.05
1818--1865
18
2.8
17
81
12
53
37
0
0
62
0.95
1843--1900
27
2.1
27
81
6
64
34
3
1
60
1.24
2331--2437
11
9.6
11
68
20
62
57
0
0
42
0.98
2371--2437
6
11.8
6
72
15
54
59
0
0
40
0.97
2866--2961
31
3.0
33
75
15
87
38
0
0
61
0.96
2873--2932
21
3.0
21
76
9
54
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2920--2986
32
2.1
32
86
2
91
40
1
0
58
1.07
2920--2963
17
2.9
14
75
18
52
43
0
0
56
0.99
3264--3319
21
2.6
21
86
8
69
37
0
0
62
0.95
3473--3509
18
2.0
20
89
10
60
67
0
2
29
1.04
3572--3622
16
3.3
15
81
8
66
37
1
0
60
1.08
3572--3630
16
3.7
15
77
8
55
35
1
0
62
1.05
4499--4575
37
2.1
37
85
4
102
45
0
3
50
1.20
4728--4785
20
2.9
20
80
12
57
51
0
0
48
1.00
7319--7371
22
2.4
22
75
9
54
41
0
0
58
0.98
7315--7391
35
2.3
34
82
8
95
41
0
0
58
0.98
8814--8849
15
2.4
15
90
0
54
63
2
2
30
1.22
8873--8905
14
2.3
15
89
5
50
57
0
0
42
0.98
9990--10044
12
4.3
13
77
11
51
45
0
1
52
1.11
11323--11368
5
8.6
5
95
4
65
56
0
0
43
0.99
12450--12485
12
3.0
12
95
0
63
52
0
0
47
1.00
12616--12648
17
1.9
17
93
0
57
6
18
12
63
1.48
13594--13679
43
2.0
43
100
0
172
34
6
23
34
1.82
14289--14322
2
17.0
2
100
0
68
50
0
0
50
1.00
14431--14504
24
3.0
25
71
11
62
45
5
0
48
1.25
14475--14511
19
2.0
20
89
10
60
56
2
0
40
1.13
14664--14715
13
3.6
14
82
12
61
57
3
0
38
1.17
15287--15311
13
1.9
13
100
0
50
0
96
4
0
0.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15286--15312
14
1.9
14
100
0
54
0
96
3
0
0.23
16380--16435
25
2.2
25
96
0
103
35
3
7
53
1.46
17763--17789
2
13.5
2
100
0
54
51
0
0
48
1.00
18601--18641
15
2.7
15
81
11
57
46
0
0
53
1.00
20211--20250
21
1.9
21
90
10
64
62
0
0
37
0.95
20536--20565
15
2.0
15
93
0
51
50
0
10
40
1.36
20980--21015
5
7.2
5
87
12
56
41
0
0
58
0.98
21536--21574
18
2.0
20
90
9
64
48
0
0
51
1.00
21694--21729
13
2.7
14
91
8
58
36
0
0
63
0.94
21704--21742
21
1.9
20
94
5
69
35
0
0
64
0.94
21709--21765
18
3.0
18
85
12
62
38
0
0
61
0.96
21713--21778
25
2.6
25
76
9
71
43
0
0
56
0.99
21761--21790
15
2.1
14
93
6
51
56
0
0
43
0.99
22058--22101
21
2.0
21
82
8
52
59
9
2
29
1.41
22158--22236
37
2.1
38
83
2
97
58
6
0
35
1.24
22197--22240
16
2.7
17
79
10
56
59
0
0
40
0.98
22387--22414
5
5.6
5
100
0
56
0
0
35
64
0.94
28428--28486
31
1.9
31
100
0
118
42
8
6
42
1.61
29232--29264
17
2.1
16
88
11
50
0
6
6
87
0.65
29671--29756
44
2.0
44
92
0
145
18
9
12
59
1.60
34623--34678
28
2.0
29
96
3
105
32
7
7
53
1.55
34625--34686
28
2.1
29
88
5
90
35
6
8
50
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35101--35147
24
1.9
25
86
4
69
31
0
0
68
0.90
42845--42924
41
2.0
41
95
4
146
27
18
17
36
1.94
43521--43551
16
1.9
16
93
0
53
48
16
12
22
1.80
44304--44378
17
4.2
17
73
9
60
40
1
1
57
1.16
44828--44856
11
2.5
12
94
5
51
65
0
0
34
0.93
44868--44932
31
2.1
31
82
0
76
61
9
7
21
1.51
45817--45846
14
2.2
14
94
5
53
63
0
0
36
0.95
45821--45900
16
5.0
16
75
13
67
57
0
1
41
1.07
45856--45889
13
2.5
13
85
4
50
58
0
2
38
1.13
45841--45900
30
2.0
29
83
3
75
56
0
1
41
1.09
46509--46541
16
2.1
16
88
11
50
75
3
0
21
0.93

Tables:   1

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