genome.fa.s2592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2592
Parameters: 2 7 7 80 10 50 1000
Length:  77170

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191--255	32	2.0	32	100	0	130	24	24	30	20	1.98
5666--5722	22	2.6	22	94	2	98	64	8	8	17	1.46
6581--6674	20	4.7	21	80	5	97	38	12	12	36	1.82
6584--6674	40	2.3	40	86	3	121	38	13	12	36	1.81
8162--8256	15	6.6	14	77	15	70	80	15	4	0	0.87
8153--8257	14	7.4	14	70	16	56	81	14	3	0	0.82
9681--10018	30	11.6	30	82	5	372	30	31	17	21	1.96
9681--9977	59	5.1	59	86	1	391	29	30	17	21	1.96
9681--9977	117	2.5	117	90	1	450	29	30	17	21	1.96
10027--10326	141	2.1	145	85	8	405	23	26	17	33	1.96
10045--10423	98	3.8	97	78	11	356	24	26	17	32	1.96
10035--10334	49	6.1	49	80	9	337	24	25	16	33	1.96
11176--11256	19	4.6	19	77	17	102	33	11	17	38	1.85
11177--11239	32	2.0	32	96	0	117	34	12	17	34	1.88
11196--11220	13	1.9	13	100	0	50	36	16	16	32	1.90
11311--11335	13	1.9	13	100	0	50	32	16	16	36	1.90
11344--11472	52	2.5	52	90	0	204	34	14	18	31	1.91
24604--24643	21	1.9	21	100	0	80	20	20	30	30	1.97
25737--25782	23	2.0	24	82	4	58	30	19	6	43	1.76
27133--27173	13	3.4	13	87	12	61	31	0	0	68	0.90
29506--30032	274	1.9	275	92	0	876	28	13	13	43	1.83
36121--36151	13	2.4	13	94	0	53	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36153--36182	14	2.1	14	93	0	51	70	3	0	26	1.03
36220--36258	19	2.1	19	95	0	69	41	10	10	38	1.73
38176--38227	14	3.6	14	72	12	52	30	0	1	67	1.02
40230--40380	34	4.4	34	91	0	248	23	0	35	41	1.55
44877--44956	34	2.4	34	100	0	160	22	0	35	42	1.54
46073--46105	15	2.2	15	94	0	57	51	3	0	45	1.16
47234--47282	24	2.0	25	96	4	91	30	0	0	69	0.89
50693--50750	17	3.2	17	80	17	64	1	20	0	77	0.86
56742--56819	27	2.9	27	90	0	111	26	7	17	47	1.75
56800--56845	24	1.9	24	86	8	67	19	8	28	43	1.80
59385--59430	21	2.1	22	84	4	58	30	19	30	19	1.97
60657--60682	13	2.0	13	100	0	52	30	15	15	38	1.88
61341--61426	39	2.2	39	87	0	118	30	25	8	36	1.85
62756--62798	20	2.1	20	86	4	59	9	30	44	16	1.79
63241--63279	13	3.0	13	96	0	69	35	15	17	30	1.91
63241--63344	46	2.3	46	83	3	120	37	16	17	28	1.91
69447--69472	13	2.0	13	100	0	52	30	15	15	38	1.88
71289--71360	27	2.7	27	88	0	108	25	6	19	48	1.73
71293--71382	27	3.5	26	83	7	103	24	7	21	46	1.77
71322--71391	24	2.8	24	85	10	79	21	8	22	47	1.78
71448--71477	13	2.3	13	94	0	51	10	33	6	50	1.62
74631--74788	84	1.9	85	86	2	228	34	25	19	20	1.96

Tables:   1

The End!