genome.fa.s2594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2594
Parameters: 2 7 7 80 10 50 1000
Length:  104501

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48--93	16	2.9	16	81	12	58	56	0	0	43	0.99
42--95	7	7.1	8	75	24	55	55	0	0	44	0.99
49--90	17	2.6	16	88	7	59	52	0	0	47	1.00
132--162	3	10.3	3	100	0	62	35	0	0	64	0.94
925--1053	59	2.2	56	77	12	127	52	1	4	41	1.31
1076--1142	14	4.8	14	75	12	66	70	2	0	26	1.02
1086--1173	27	3.3	26	79	9	79	68	1	0	30	0.97
1076--1150	14	5.4	13	76	9	60	70	2	0	26	1.00
1074--1144	21	3.4	21	72	20	67	70	2	0	26	1.01
1060--1191	14	9.9	14	65	19	59	63	1	0	34	1.04
4933--4974	18	2.2	20	83	8	52	61	0	4	33	1.17
5327--5359	2	16.5	2	100	0	66	51	0	0	48	1.00
6078--6118	20	2.1	20	90	4	66	36	7	0	56	1.27
7618--7685	18	3.8	17	74	21	52	61	1	1	35	1.14
7638--7695	27	2.1	28	81	9	66	58	0	3	37	1.15
7615--7677	31	2.0	30	82	11	74	61	1	1	34	1.15
7620--7685	17	3.9	17	72	23	59	60	1	1	36	1.15
8498--8582	30	2.8	30	80	3	100	54	3	0	42	1.17
8740--8769	6	4.8	6	92	8	51	46	0	0	53	1.00
9040--9094	2	28.0	2	78	10	51	49	7	0	43	1.30
9384--9409	2	13.0	2	100	0	52	50	0	0	50	1.00
10182--10227	19	2.5	18	85	3	56	23	6	0	69	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10177--10607	167	2.6	166	84	4	552	29	11	6	52	1.61
10177--10703	167	3.2	166	81	5	439	30	10	5	52	1.59
12127--12734	158	3.9	157	88	2	857	35	10	11	42	1.76
14768--14805	20	1.9	20	89	10	60	42	0	2	55	1.14
14786--14850	32	2.0	33	84	3	87	40	0	1	58	1.07
14765--14848	18	5.0	17	73	22	63	40	0	1	58	1.06
15927--15970	13	3.3	13	90	6	70	27	0	0	72	0.85
15931--15970	3	13.3	3	84	10	55	27	0	0	72	0.85
16719--16768	14	3.6	14	73	10	57	38	0	0	62	0.96
18938--18989	2	26.0	2	96	0	95	48	0	1	50	1.12
19651--19734	42	2.0	42	95	0	150	40	14	11	33	1.82
20305--20371	23	2.9	23	68	14	57	62	0	1	35	1.04
26450--26492	22	2.0	23	86	9	63	44	0	6	48	1.29
27556--27621	22	3.1	21	82	8	80	56	0	0	43	0.99
27560--27639	29	2.8	28	73	23	78	58	0	0	41	0.98
27619--27672	15	3.7	14	76	16	56	46	0	1	51	1.11
27701--27769	16	4.5	15	84	12	86	65	1	1	31	1.11
27712--27755	9	5.3	9	74	20	51	63	0	0	36	0.95
27684--27768	32	2.7	31	84	8	102	63	1	1	34	1.10
27684--27755	32	2.3	32	90	2	110	61	0	1	37	1.05
29878--29908	16	1.9	16	100	0	62	25	22	12	38	1.90
37027--37066	12	3.3	12	85	0	53	37	0	12	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37036--37070	10	3.5	10	100	0	70	37	0	11	51	1.38
39610--39639	2	15.0	2	92	0	51	0	46	3	50	1.18
43971--43998	2	14.0	2	100	0	56	0	0	50	50	1.00
43998--44034	2	18.0	2	94	5	65	48	0	48	2	1.15
51669--51713	16	2.8	16	80	16	56	68	0	0	31	0.89
51894--51949	24	2.3	24	100	0	112	42	3	3	50	1.37
51908--51951	14	3.4	14	70	23	51	47	2	4	45	1.35
51894--51961	24	2.8	24	91	4	84	47	2	2	47	1.32
52450--52497	19	2.5	19	86	3	60	45	2	0	52	1.12
53808--53849	21	2.0	21	86	9	59	52	0	2	45	1.13
54422--54468	21	2.3	21	82	10	53	44	0	0	55	0.99
54962--55004	15	2.8	15	76	16	52	55	0	0	44	0.99
57398--57427	12	2.5	12	94	0	51	43	16	3	36	1.65
57902--57945	22	2.0	22	82	4	54	56	0	2	40	1.11
58714--58747	3	11.3	3	100	0	68	67	0	0	32	0.91
58838--58881	13	3.3	13	78	6	52	52	0	0	47	1.00
59425--59487	32	2.0	30	82	14	74	44	0	1	53	1.10
59876--59926	25	2.1	24	82	10	59	45	1	0	52	1.12
60639--60686	4	12.0	4	90	0	69	43	0	6	50	1.27
60639--60686	6	8.0	6	90	0	69	43	0	6	50	1.27
60639--60686	10	4.8	10	92	0	69	43	0	6	50	1.27
61471--61522	27	2.0	27	88	3	79	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61679--61732	23	2.3	24	81	18	69	29	0	0	70	0.88
61669--61732	21	2.9	22	78	19	71	34	0	0	65	0.93
61669--61732	22	2.9	23	80	13	73	34	0	0	65	0.93
61717--61757	21	2.0	21	85	0	55	41	0	0	58	0.98
62607--62662	28	1.9	30	85	7	80	50	0	0	50	1.00
63558--63588	15	2.1	15	100	0	62	61	0	0	38	0.96
64519--64552	15	2.3	15	90	10	52	23	0	11	64	1.26
64891--64931	22	1.9	21	85	5	55	29	9	7	53	1.60
66289--66333	21	2.2	21	84	4	56	48	0	0	51	1.00
67609--67746	65	2.1	66	86	1	188	30	10	13	45	1.77
67913--67958	7	6.6	7	100	0	92	56	13	0	30	1.37
68897--68936	18	2.2	18	100	0	80	42	25	10	22	1.84
69324--69360	15	2.5	15	90	0	56	45	0	5	48	1.25
69430--69469	16	2.5	16	83	0	53	27	0	10	62	1.27
69441--69507	16	4.2	16	74	0	62	37	2	5	53	1.41
69763--69801	20	2.0	19	95	5	69	30	0	0	69	0.89
70339--70368	15	2.1	15	93	6	53	60	0	0	40	0.97
70487--70543	26	2.4	24	83	13	66	49	3	0	47	1.18
71000--71052	16	3.3	16	75	15	56	66	0	1	32	1.03
71652--71688	18	2.2	18	85	9	51	43	0	2	54	1.14
71635--71696	26	2.5	24	74	10	63	46	1	1	50	1.20
71882--71938	27	2.1	27	81	12	64	45	8	1	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74294--74364	12	6.5	11	80	16	69	40	0	45	14	1.44
74313--74344	9	3.6	9	91	0	55	43	0	43	12	1.42
74322--74392	33	2.2	33	89	0	106	42	1	45	11	1.48
77746--78247	59	8.4	59	93	1	779	26	20	27	25	1.99
79234--79268	14	2.5	14	90	9	54	0	5	11	82	0.82
89595--89627	4	8.2	4	100	0	66	75	0	0	24	0.80
90298--90441	62	2.3	62	97	0	279	29	20	26	23	1.99
91756--91961	78	2.6	78	82	2	234	28	17	29	24	1.97
91913--91984	28	2.6	28	88	0	99	23	19	34	22	1.96
91973--92320	52	6.6	51	68	17	154	31	12	24	30	1.93
91862--92317	212	2.1	214	85	3	607	31	14	26	28	1.94
92127--92197	27	2.6	28	84	8	92	22	22	32	22	1.98
91859--92220	107	3.4	104	70	11	277	30	14	27	27	1.96
92184--92319	51	2.5	52	84	9	159	33	10	22	34	1.88
94651--94717	34	2.0	33	88	2	98	46	13	14	25	1.82
94735--94805	19	4.2	17	70	25	69	38	12	11	38	1.79
94740--94802	32	2.0	32	90	0	99	34	14	12	38	1.84
96617--96660	22	2.0	22	91	8	72	56	0	0	43	0.99
98147--98332	71	2.6	71	83	5	225	56	6	2	34	1.37
98495--98549	26	2.1	27	86	10	87	61	1	0	36	1.06
98753--98801	21	2.3	22	79	10	66	36	0	0	63	0.95
103103--104330	28	42.2	29	81	8	1057	23	16	30	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103103--104168	292	3.6	287	86	5	1318	22	17	30	29	1.97
104205--104404	27	7.4	27	87	0	265	29	13	31	25	1.94

Tables:   1

The End!