genome.fa.s2595.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2595
Parameters: 2 7 7 80 10 50 1000
Length:  31979

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1620--1710	34	2.7	35	77	6	98	19	30	12	37	1.88
1685--1941	88	3.0	88	90	4	389	31	29	18	21	1.97
1466--1943	59	8.1	58	74	11	317	28	29	16	25	1.97
1466--1943	30	16.1	30	80	8	383	28	29	16	25	1.97
1947--2035	43	2.1	43	93	0	151	26	24	17	30	1.98
1967--2036	21	3.3	21	64	18	54	27	25	18	28	1.98
1990--2128	52	2.6	52	80	5	152	24	24	17	33	1.96
2960--2984	13	1.9	13	100	0	50	36	16	16	32	1.90
2940--3006	33	2.0	33	88	0	98	32	11	14	40	1.83
3080--3208	52	2.5	52	92	0	213	34	17	18	29	1.94
12344--12408	13	5.0	13	90	0	103	32	18	13	35	1.90
12347--12408	26	2.4	26	97	0	115	33	19	12	33	1.90
12529--12575	21	2.3	20	78	10	51	34	19	2	44	1.62
13946--14006	23	2.7	23	94	0	104	31	1	22	44	1.63
14747--14798	19	2.7	20	87	6	79	38	19	13	28	1.89
16808--16832	13	1.9	13	100	0	50	36	16	16	32	1.90
16785--16852	33	2.1	33	89	8	104	32	14	16	36	1.89
16925--16962	20	1.9	20	100	0	76	31	10	13	44	1.77
18953--18978	13	2.0	13	100	0	52	30	15	15	38	1.88
21527--21564	13	2.9	13	96	0	67	31	15	18	34	1.92
25452--25496	21	2.1	21	84	8	56	22	20	4	53	1.63
27727--27752	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29677--29712	18	2.1	17	89	5	54	0	5	11	83	0.80
30853--30884	13	2.5	13	94	0	55	43	12	18	25	1.85

Tables:   1

The End!