Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2599
Parameters: 2 7 7 80 10 50 1000
Length:  50041

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
420--458
13
3.0
13
96
0
69
30
17
15
35
1.91
2248--2350
40
2.8
40
90
10
157
23
2
22
51
1.61
2971--3043
20
3.6
20
81
3
101
35
13
19
31
1.91
2971--3065
41
2.3
42
96
1
174
40
12
17
29
1.87
3104--3129
13
2.0
13
100
0
52
38
15
15
30
1.88
3086--3148
32
2.0
32
87
6
92
39
15
15
28
1.89
5660--5726
33
2.0
33
88
0
98
34
11
13
40
1.81
5680--5704
13
1.9
13
100
0
50
36
16
16
32
1.90
5782--5925
52
2.8
49
84
10
173
33
18
16
31
1.94
5802--5931
52
2.5
52
91
3
201
33
19
16
31
1.94
16526--16592
12
5.8
11
75
20
57
82
10
4
2
0.93
16528--16562
15
2.4
14
95
4
61
91
8
0
0
0.42
17813--19002
28
42.2
27
84
7
1398
27
30
18
23
1.97
19596--19670
20
3.8
20
80
0
96
33
13
12
41
1.81
19596--19673
40
2.0
39
89
2
120
33
12
12
41
1.82
20580--20630
22
2.3
22
100
0
102
19
11
9
58
1.60
23209--23252
15
2.9
15
80
10
54
68
0
27
4
1.09
23345--23406
17
3.7
16
72
10
52
45
1
3
50
1.27
23344--23400
18
3.3
17
76
9
53
40
0
3
56
1.17
24842--24889
21
2.3
21
85
3
62
56
0
4
39
1.19
24880--24910
16
1.9
16
93
0
53
67
0
3
29
1.06
25884--26009
64
2.0
64
96
0
234
40
10
18
30
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29489--29549
20
3.4
19
80
11
58
55
1
1
40
1.19
29802--29828
2
13.5
2
100
0
54
48
0
0
51
1.00
30571--30613
12
3.4
12
78
12
50
23
2
0
74
0.93
32585--32873
79
3.6
79
80
6
307
35
11
24
28
1.90
36175--36207
14
2.3
15
89
5
50
18
0
15
66
1.25
36181--36234
25
2.2
25
83
6
65
16
1
11
70
1.25
37325--37429
52
2.0
52
86
0
147
40
16
19
24
1.91
37477--37536
31
2.0
31
83
3
77
23
13
30
33
1.93
37598--38697
86
12.9
86
70
14
459
24
17
29
29
1.97
37605--38697
57
19.7
56
74
9
755
24
17
29
29
1.97
37598--37895
29
10.3
29
82
4
318
23
17
29
29
1.97
37904--38609
29
25.1
28
77
7
450
24
16
28
30
1.97
38540--38683
74
1.9
75
82
4
182
20
18
30
29
1.97
38624--38718
27
3.4
28
78
12
106
29
16
25
28
1.97
39866--39955
22
4.2
23
78
18
88
7
12
10
70
1.35
39866--39955
43
2.1
41
84
12
110
7
12
10
70
1.35
45194--45226
14
2.3
15
89
5
50
18
0
15
66
1.25
48745--48785
11
3.5
11
81
12
55
78
0
19
2
0.87
49168--49200
2
16.5
2
93
0
57
45
0
3
51
1.16

Tables:   1

The End!