Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold260
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1006324
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
File 6 of 7
Found at i:809849 original size:22 final size:22
Alignment explanation
Indices: 809780--809849 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 22
809770 ATTATTTAAA
*
809780 TAATA-AAAAATATTTTTAAAATT
1 TAATATAAAAA-A-TTTTAATATT
*
809803 TAAT-TATAAAATTTATACATA-T
1 TAATATAAAAAATTT-TA-ATATT
809825 TAATATAAAAAATTTTAATATT
1 TAATATAAAAAATTTTAATATT
809847 TAA
1 TAA
809850 AAATAGTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
21 6 0.15
22 14 0.36
23 19 0.49
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATATAAAAAATTTTAATATT
Found at i:810628 original size:15 final size:15
Alignment explanation
Indices: 810610--810659 Score: 50
Period size: 14 Copynumber: 3.3 Consensus size: 15
810600 TTAAAATTAT
810610 AAATAAATAATATAA
1 AAATAAATAATATAA
**
810625 AAAT-TTTAA-ATATA
1 AAATAAATAATATA-A
810639 AAATAAATAAATATAA
1 AAATAAAT-AATATAA
810655 AAATA
1 AAATA
810660 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
13 3 0.11
14 8 0.30
15 5 0.19
16 8 0.30
17 3 0.11
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAATAAATAATATAA
Found at i:810631 original size:30 final size:32
Alignment explanation
Indices: 810595--810679 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 32
810585 ATGTAAATAT
810595 AAATTTTAAAAT-TATAAATAAAT-AATAT-AA
1 AAATTTTAAAATATA-AAATAAATAAATATAAA
810625 AAATTTT-AAATATAAAATAAATAAATATAAA
1 AAATTTTAAAATATAAAATAAATAAATATAAA
* *
810656 AATATTTTAAAAAATATAATAAAT
1 AA-ATTTTAAAATATAAAATAAAT
810680 TATACTAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
29 12 0.25
30 14 0.29
31 4 0.08
32 5 0.10
33 13 0.27
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (32 bp):
AAATTTTAAAATATAAAATAAATAAATATAAA
Found at i:810643 original size:22 final size:22
Alignment explanation
Indices: 810588--810655 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
810578 CGTTTATATG
* *
810588 TAAATAT-AAATTTTAAAATTA
1 TAAATATAAAATATAAAAATTA
*
810609 TAAATA-AATAATATAAAAATTT
1 TAAATATAA-AATATAAAAATTA
810631 TAAATATAAAATA-AATAAA-TA
1 TAAATATAAAATATAA-AAATTA
810652 TAAA
1 TAAA
810656 AATATTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
21 14 0.36
22 23 0.59
23 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
TAAATATAAAATATAAAAATTA
Found at i:810645 original size:29 final size:31
Alignment explanation
Indices: 810588--810667 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 31
810578 CGTTTATATG
810588 TAAATAT--AAATTTTAAAATTATAAATAAA
1 TAAATATAAAAATTTTAAAATTATAAATAAA
810617 T-AATATAAAAATTTT-AAA-TATAAAATAAA
1 TAAATATAAAAATTTTAAAATTAT-AAATAAA
810646 TAAATATAAAAATATTTTAAAA
1 TAAATAT-AAAA-ATTTTAAAA
810668 AATATAATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
28 8 0.18
29 12 0.27
30 12 0.27
31 4 0.09
32 5 0.11
33 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (31 bp):
TAAATATAAAAATTTTAAAATTATAAATAAA
Found at i:810781 original size:11 final size:11
Alignment explanation
Indices: 810767--810808 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
810757 TGATAAAAAA
810767 AATTAAAAATT
1 AATTAAAAATT
810778 AATTAAAAATT
1 AATTAAAAATT
* *
810789 AAATAAATTATT
1 AATTAAA-AATT
810801 -ATTAAAAA
1 AATTAAAAA
810809 AGTCAATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 1 0.04
11 22 0.85
12 3 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATTAAAAATT
Found at i:811160 original size:14 final size:15
Alignment explanation
Indices: 811139--811182 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
811129 TTTTGAACAC
811139 ATTATTAAATATAAT
1 ATTATTAAATATAAT
* *
811154 A-TATTAAAAATATT
1 ATTATTAAATATAAT
811168 ATTATTTAAATATAA
1 ATTA-TTAAATATAA
811183 GTTTATAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 12 0.52
15 3 0.13
16 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATTAAATATAAT
Found at i:811198 original size:23 final size:23
Alignment explanation
Indices: 811172--811234 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
811162 AATATTATTA
811172 TTTAAATATAAGT-TTATAAAATT
1 TTTAAATATAA-TATTATAAAATT
811195 TTTAAATATAATATTATAAAATAT
1 TTTAAATATAATATTATAAAAT-T
**
811219 TATTAGCTATAATATT
1 T-TTAAATATAATATT
811235 TTAATATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 1 0.03
23 20 0.57
24 2 0.06
25 12 0.34
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.48
Consensus pattern (23 bp):
TTTAAATATAATATTATAAAATT
Found at i:811581 original size:20 final size:20
Alignment explanation
Indices: 811530--811581 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
811520 TCACAACGTC
811530 ATTGAAAATAAAAATATATAT
1 ATTG-AAATAAAAATATATAT
**
811551 ATTGAGTTAAAAATATATAT
1 ATTGAAATAAAAATATATAT
*
811571 TTTGAAATAAA
1 ATTGAAATAAA
811582 TAATTTAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.37
Consensus pattern (20 bp):
ATTGAAATAAAAATATATAT
Found at i:811721 original size:13 final size:13
Alignment explanation
Indices: 811705--811734 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
811695 TTATATATTT
*
811705 AATTTTTTAATTA
1 AATTTATTAATTA
811718 AATTTATTAATTA
1 AATTTATTAATTA
811731 AATT
1 AATT
811735 GATATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
AATTTATTAATTA
Found at i:817990 original size:16 final size:16
Alignment explanation
Indices: 817966--817996 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
817956 TAGATAAATT
*
817966 TTTTTTTATTATTTTA
1 TTTTGTTATTATTTTA
817982 TTTTGTTATTATTTT
1 TTTTGTTATTATTTT
817997 TTATTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTGTTATTATTTTA
Found at i:819966 original size:15 final size:17
Alignment explanation
Indices: 819935--819966 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
819925 TAAAAAGAAT
819935 AAAACAAGAATGCAGGA
1 AAAACAAGAATGCAGGA
819952 AAAACAA-AA-GCAGGA
1 AAAACAAGAATGCAGGA
819967 CCACACAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.62, C:0.12, G:0.22, T:0.03
Consensus pattern (17 bp):
AAAACAAGAATGCAGGA
Found at i:820177 original size:42 final size:41
Alignment explanation
Indices: 820049--820619 Score: 430
Period size: 42 Copynumber: 13.7 Consensus size: 41
820039 TATTCTCCCA
* * * ** *
820049 GGTCAAAGCCAACGGGCAGACTTAGGGAAAGAAAGT-TCCAT
1 GGTCAAAGCCGACAGGCAGACTGAGGGTGA-AAAGTCTCCAG
* * *
820090 GGTCAAAGCCGACAGGCAGACTAAGGAT--AAAGTCTCCCG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTGAAAAGTCTCCAG
* *
820129 GGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCTAC
1 GGTCAAAGCCGACAGGCAGACTGAGGG-TGAAAAGTCTCCAG
*
820171 GGTCAAAGTCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGG-TGAAAAGTCTCCAG
* * * ** *
820213 GGTCAAAGTCGATAGGCAGACTAAGGGAAAAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTGAAAAGTCTCCAG
* * * ** * *
820254 GGACGAAGCCGACAAGCAGACT-ACGGGAAAGAAAGTCTCTAA
1 GGTCAAAGCCGACAGGCAGACTGA-GGGTGA-AAAGTCTCCAG
* * ** *
820296 GGACGAAGCCGACAGATAGACTGAAGGGTTGAGAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTG-AGGG-TGAAAAGTCTCCAG
* * * * **
820339 GGTCAAAGCCGATAAGTAGACTAAGGGAAAGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTGA-AAAGTCTCCAG
* * * * *
820381 AGACGAAGTCGACAGGTAGACTGAAGGGTTGAAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTG-AGGG-TGAAAAGTCTCCAG
* *
820424 GGTCAAAGCCGACAGGTAGACTGAGGGATGAAAAGTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTGAGGG-TGAAAAGTCTCCAG
* * * **
820466 GGTCAAAGCTGACAGGCAAACTAAGGGAAAGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTGA-AAAGTCTCCAG
* * * ** *
820508 GGACGAAGCCGACAGGCAGACTGCGGGAAAGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTGAGGGTGA-AAAGTCTCCAG
** * * *
820550 GAACAAAGCCGACTGGTAGACTGAAGGGTTGAAAAGTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTG-AGGG-TGAAAAGTCTCCAG
* *
820593 GGTCAAAGCCGATAGGCAGACTAAGGG
1 GGTCAAAGCCGACAGGCAGACTGAGGG
820620 AAGAAACCGA
Statistics
Matches: 428, Mismatches: 87, Indels: 29
0.79 0.16 0.05
Matches are distributed among these distances:
38 5 0.01
39 28 0.07
40 2 0.00
41 59 0.14
42 239 0.56
43 91 0.21
44 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (41 bp):
GGTCAAAGCCGACAGGCAGACTGAGGGTGAAAAGTCTCCAG
Found at i:820360 original size:85 final size:85
Alignment explanation
Indices: 820080--820625 Score: 481
Period size: 85 Copynumber: 6.5 Consensus size: 85
820070 TTAGGGAAAG
* * *** *
820080 AAAGT-TCCATGGTCAAAGCCGACAGGCAGACTAA-GG--ATAAAGTCTCCCGGGTCAAAGCCGA
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCTAAGGACAAAGCCGA
*
820141 CAGGCAGACTG-AGGGTTGA
66 CAGGTAGACTGAAGGGTTGA
* * * * ** * * * *
820160 AAAGTCTCTACGGTCAAAGTCGACAGGCAGACTGAGGG-TTGAAAAGTCTCCAGGGTCAAAGTCG
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAG-AAAGTCTCTAAGGACAAAGCCG
* * **
820224 ATAGGCAGACT-AAGGG-AAA
65 ACAGGTAGACTGAAGGGTTGA
* * * * * *
820243 AAAGTCTCTAGGGACGAAGCCGACAAGCAGACTACGGGAAAGAAAGTCTCTAAGGACGAAGCCGA
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCTAAGGACAAAGCCGA
*
820308 CAGATAGACTGAAGGGTTGA
66 CAGGTAGACTGAAGGGTTGA
* * * * * * *
820328 GAAGTCTCCAGGGTCAAAGCCGATAAGTAGACTAAGGGAAAGAAAGTCTC-CAGAGACGAAGTCG
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCTAAG-GACAAAGCCG
820392 ACAGGTAGACTGAAGGGTTGA
65 ACAGGTAGACTGAAGGGTTGA
* * * * * *
820413 AAAGTCTCCAGGGTCAAAGCCGACAGGTAGACTGAGGG-ATGAAAAGTCTCCAAGGTCAAAGCTG
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAG-AAAGTCTCTAAGGACAAAGCCG
* * **
820477 ACAGGCAAACT-AAGGG-AAA
65 ACAGGTAGACTGAAGGGTTGA
* * **
820496 GAAAGTCTCCAGGGACGAAGCCGACAGGCAGACTGCGGGAAAGAAAGTCTCT-AGGAACAAAGCC
1 -AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCTAAGG-ACAAAGCC
*
820560 GACTGGTAGACTGAAGGGTTGA
64 GACAGGTAGACTGAAGGGTTGA
* *
820582 AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGG-AAGAAA
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAA
820626 CCGATAGGTA
Statistics
Matches: 377, Mismatches: 73, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
80 5 0.01
81 25 0.07
82 2 0.01
83 61 0.16
84 112 0.30
85 169 0.45
86 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (85 bp):
AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAAGTCTCTAAGGACAAAGCCGA
CAGGTAGACTGAAGGGTTGA
Found at i:820392 original size:168 final size:169
Alignment explanation
Indices: 820134--820625 Score: 399
Period size: 169 Copynumber: 2.9 Consensus size: 169
820124 TCCCGGGTCA
* * * * * *
820134 AAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCTACGGTCAAAGTCGACAGGCAGACTGAGGGT
1 AAGCCGACAGACAGACTGAGGGTTGAAAAGTCTCCACGGTCAAAGCCGACAAGCAGACTAAGGGA
* * * * * *
820199 TGAAAAGTCTCCAGGGTCAAAGTCGATAGGCAGACT-AAGGG-AAAAAAGTCTCTAGGGACGAAG
66 AGAAAAGTCTCCAGAGACAAAGTCGACAGGCAGACTGAAGGGTAAAAAAGTCTCCAGGGACAAAG
820262 CCGACAAGCAGACTACGGGAAAGAAAGTCTCTAAGGACG
131 CCGACAAGCAGACTACGGGAAAGAAAGTCTCTAAGGACG
* * * * *
820301 AAGCCGACAGATAGACTGAAGGGTTGAGAAGTCTCCAGGGTCAAAGCCGATAAGTAGACTAAGGG
1 AAGCCGACAGACAGACTG-AGGGTTGAAAAGTCTCCACGGTCAAAGCCGACAAGCAGACTAAGGG
* * ** *
820366 AA-AGAAAGTCTCCAGAGACGAAGTCGACAGGTAGACTGAAGGGTTGAAAAGTCTCCAGGGTCAA
65 AAGA-AAAGTCTCCAGAGACAAAGTCGACAGGCAGACTGAAGGGTAAAAAAGTCTCCAGGGACAA
* * * * * *
820430 AGCCGACAGGTAGACTGA-GGG-ATGAAAAGTCTCCAAGGTCA
129 AGCCGACAAGCAGACT-ACGGGAAAG-AAAGTCTCTAAGGACG
* * * * ** * * * * **
820471 AAGCTGACAGGCAAACTAAGGG-AAAGAAAGTCTCCAGGGACGAAGCCGACAGGCAGACTGCGGG
1 AAGCCGACAGACAGACTGAGGGTTGA-AAAGTCTCCACGGTCAAAGCCGACAAGCAGACTAAGGG
* * * * ** * *
820535 AA-AGAAAGTCTCTAG-GAACAAAGCCGACTGGTAGACTGAAGGGTTGAAAAGTCTCCAAGGTCA
65 AAGA-AAAGTCTCCAGAG-ACAAAGTCGACAGGCAGACTGAAGGGTAAAAAAGTCTCCAGGGACA
* * *
820598 AAGCCGATAGGCAGACTAAGGG-AAGAAA
128 AAGCCGACAAGCAGACTACGGGAAAGAAA
820626 CCGATAGGTA
Statistics
Matches: 265, Mismatches: 51, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
167 17 0.06
168 72 0.27
169 117 0.44
170 58 0.22
171 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.31, T:0.14
Consensus pattern (169 bp):
AAGCCGACAGACAGACTGAGGGTTGAAAAGTCTCCACGGTCAAAGCCGACAAGCAGACTAAGGGA
AGAAAAGTCTCCAGAGACAAAGTCGACAGGCAGACTGAAGGGTAAAAAAGTCTCCAGGGACAAAG
CCGACAAGCAGACTACGGGAAAGAAAGTCTCTAAGGACG
Found at i:820470 original size:127 final size:127
Alignment explanation
Indices: 820080--820625 Score: 646
Period size: 127 Copynumber: 4.4 Consensus size: 127
820070 TTAGGGAAAG
* * * * * *
820080 AAAGT-TCCATGGTCAAAGCCGACAGGCAGACTAA-GG--ATAAAGTCTCCCGGGTCAAAGCCGA
1 AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGACGAAGCCGA
** * * * *
820141 CAGGCAGACTGAGGG-TTGAAAAGTCTCTACGGTCAAAGTCGACAGGCAGACTG-AGGGTTGA
66 CAGGCAGACTGAGGGAAAG-AAAGTCTCTAGGGACAAAGCCGACAGGTAGACTGAAGGGTTGA
* * *
820202 AAAGTCTCCAGGGTCAAAGTCGATAGGCAGACTAAGGGAAA-AAAGTCTCTAGGGACGAAGCCGA
1 AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGACGAAGCCGA
* * * *
820266 CAAGCAGACT-ACGGGAAAGAAAGTCTCTAAGGACGAAGCCGACAGATAGACTGAAGGGTTGA
66 CAGGCAGACTGA-GGGAAAGAAAGTCTCTAGGGACAAAGCCGACAGGTAGACTGAAGGGTTGA
* * * * * *
820328 GAAGTCTCCAGGGTCAAAGCCGATAAGTAGACTAAGGGAAAGAAAGTCTCCAGAGACGAAGTCGA
1 AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGACGAAGCCGA
* ** * * *
820393 CAGGTAGACTGAAGGG-TTGAAAAGTCTCCAGGGTCAAAGCCGACAGGTAGACTG-AGGGATGA
66 CAGGCAGACTG-AGGGAAAG-AAAGTCTCTAGGGACAAAGCCGACAGGTAGACTGAAGGGTTGA
* * *
820455 AAAGTCTCCAAGGTCAAAGCTGACAGGCAAACTAAGGGAAAGAAAGTCTCCAGGGACGAAGCCGA
1 AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGACGAAGCCGA
* * *
820520 CAGGCAGACTGCGGGAAAGAAAGTCTCTAGGAACAAAGCCGACTGGTAGACTGAAGGGTTGA
66 CAGGCAGACTGAGGGAAAGAAAGTCTCTAGGGACAAAGCCGACAGGTAGACTGAAGGGTTGA
820582 AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGG-AAGAAA
1 AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAA
820626 CCGATAGGTA
Statistics
Matches: 357, Mismatches: 54, Indels: 22
0.82 0.12 0.05
Matches are distributed among these distances:
122 5 0.01
123 26 0.07
124 3 0.01
125 59 0.17
126 86 0.24
127 145 0.41
128 32 0.09
129 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.31, T:0.14
Consensus pattern (127 bp):
AAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGGAAAGAAAGTCTCCAGGGACGAAGCCGA
CAGGCAGACTGAGGGAAAGAAAGTCTCTAGGGACAAAGCCGACAGGTAGACTGAAGGGTTGA
Found at i:820678 original size:68 final size:69
Alignment explanation
Indices: 820564--820694 Score: 228
Period size: 68 Copynumber: 1.9 Consensus size: 69
820554 AAAGCCGACT
*
820564 GGTAGACTGAAGGGTTGAAAAGTCTCCAAGGTCAAAGCCGATAGGCAGACTAAGGG-AAGAAACC
1 GGTAGACTGAAGGGTTGAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAACC
820628 GATA
66 GATA
* *
820632 GGTAGACTGAAGGGTTGAAAAGTCTCCAGGGTTAAAGCCGACAGGCAGACTAAGGGAAAGAAA
1 GGTAGACTGAAGGGTTGAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAA
820695 AAAAGATGAA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
68 53 0.90
69 6 0.10
ACGTcount: A:0.38, C:0.15, G:0.32, T:0.15
Consensus pattern (69 bp):
GGTAGACTGAAGGGTTGAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAGGGAAAGAAACC
GATA
Found at i:828961 original size:22 final size:19
Alignment explanation
Indices: 828913--828961 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 19
828903 TAATTAAGCA
828913 AATACTGATGAATGATTATG
1 AATA-TGATGAATGATTATG
*
828933 AAAATGATGAATGAATGTCATG
1 AATATGATGAATG-AT-T-ATG
828955 AATATGA
1 AATATGA
828962 ATGCCATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 9 0.38
20 5 0.21
21 1 0.04
22 9 0.38
ACGTcount: A:0.45, C:0.04, G:0.20, T:0.31
Consensus pattern (19 bp):
AATATGATGAATGATTATG
Found at i:833253 original size:16 final size:16
Alignment explanation
Indices: 833229--833259 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
833219 TAGATAAATT
*
833229 TTTTTTTATTATTTTA
1 TTTTGTTATTATTTTA
833245 TTTTGTTATTATTTT
1 TTTTGTTATTATTTT
833260 TTATTTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTGTTATTATTTTA
Found at i:833668 original size:16 final size:16
Alignment explanation
Indices: 833636--833671 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
833626 TTACAAGAAT
**
833636 ATCAATAAAATTTAGC
1 ATCAATAAAATCAAGC
833652 ATCAATAAAATCAAGC
1 ATCAATAAAATCAAGC
833668 ATCA
1 ATCA
833672 CACCTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.17, G:0.06, T:0.25
Consensus pattern (16 bp):
ATCAATAAAATCAAGC
Found at i:833815 original size:16 final size:16
Alignment explanation
Indices: 833777--833815 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
833767 AATCGATTGG
833777 AAAATAAAGAACAACA
1 AAAATAAAGAACAACA
833793 AACAATAAA-AACAAGCA
1 AA-AATAAAGAACAA-CA
833810 AAAATA
1 AAAATA
833816 TCATGAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.74, C:0.13, G:0.05, T:0.08
Consensus pattern (16 bp):
AAAATAAAGAACAACA
Found at i:835047 original size:8 final size:8
Alignment explanation
Indices: 835036--835061 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
835026 TTGATTTAAA
835036 AAAAAAAT
1 AAAAAAAT
835044 AAAAAAAT
1 AAAAAAAT
835052 AAAAAAAT
1 AAAAAAAT
835060 AA
1 AA
835062 TCCGGACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:839173 original size:19 final size:18
Alignment explanation
Indices: 839149--839184 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
839139 AACAGAGGCA
*
839149 ATAAAAATTATTCATAAAT
1 ATAAAAA-TAATCATAAAT
839168 ATAAAAATAATCATAAA
1 ATAAAAATAATCATAAA
839185 AATTATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
ATAAAAATAATCATAAAT
Found at i:841496 original size:15 final size:15
Alignment explanation
Indices: 841476--841504 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
841466 TCAACTCTAG
841476 GCTTTTTAGGAGTAA
1 GCTTTTTAGGAGTAA
841491 GCTTTTTAGGAGTA
1 GCTTTTTAGGAGTA
841505 GATTCTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.28, T:0.41
Consensus pattern (15 bp):
GCTTTTTAGGAGTAA
Found at i:843425 original size:21 final size:21
Alignment explanation
Indices: 843392--843438 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
843382 ATTATATTTA
843392 TATATTTTATTATGTTATAA-T
1 TATATTTTATTATGTTA-AATT
*
843413 TATA-TTTATTTATTTTAAATT
1 TATATTTTA-TTATGTTAAATT
843434 TATAT
1 TATAT
843439 AAATTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TATATTTTATTATGTTAAATT
Found at i:843440 original size:29 final size:29
Alignment explanation
Indices: 843382--843437 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
843372 GTATATCTGT
*
843382 ATTATATTTATATATTTTATTATGTTATA
1 ATTATATTTATATATTTTATAATGTTATA
*
843411 ATTATATTTATTTATTTTA-AAT-TTATA
1 ATTATATTTATATATTTTATAATGTTATA
843438 TAAATTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.20
28 2 0.08
29 18 0.72
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (29 bp):
ATTATATTTATATATTTTATAATGTTATA
Found at i:843550 original size:11 final size:11
Alignment explanation
Indices: 843485--843558 Score: 59
Period size: 11 Copynumber: 7.0 Consensus size: 11
843475 TTTAAAATAT
843485 TTATATTTT-TA
1 TTAT-TTTTATA
843496 TTATTTTT-TA
1 TTATTTTTATA
843506 TTATTTTTATA
1 TTATTTTTATA
* *
843517 --A-TATCATA
1 TTATTTTTATA
* *
843525 TCATATTTTACA
1 TTAT-TTTTATA
843537 TTATTTTTATA
1 TTATTTTTATA
843548 TTATTTTTATA
1 TTATTTTTATA
843559 ATTTATAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
8 5 0.10
9 1 0.02
10 15 0.29
11 23 0.45
12 7 0.14
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:843573 original size:42 final size:40
Alignment explanation
Indices: 843485--843573 Score: 117
Period size: 42 Copynumber: 2.2 Consensus size: 40
843475 TTTAAAATAT
*
843485 TTATATTTTTATTATTTTTTATTATTTTTATAATATCATA
1 TTATATTTTCATTATTTTTTATTATTTTTATAATATCATA
* *
843525 TCATATTTTACATTATTTTTATATTATTTTTATAAT-TTATAA
1 TTATATTTT-CATTATTTTT-TATTATTTTTATAATATCAT-A
843567 TTATATT
1 TTATATT
843574 ATGTTGTGCC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 8 0.19
41 12 0.29
42 22 0.52
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.65
Consensus pattern (40 bp):
TTATATTTTCATTATTTTTTATTATTTTTATAATATCATA
Found at i:847057 original size:10 final size:10
Alignment explanation
Indices: 847045--847135 Score: 78
Period size: 10 Copynumber: 9.0 Consensus size: 10
847035 AAATATATAA
* *
847045 AAATTAAATA
1 AAATAAAATT
*
847055 AAATACAATT
1 AAATAAAATT
847065 AAATAAAATGT
1 AAATAAAAT-T
*
847076 AAAT-ATA-T
1 AAATAAAATT
*
847084 AAAAAAAATT
1 AAATAAAATT
*
847094 AAATACAATT
1 AAATAAAATT
847104 AAATAAAATGT
1 AAATAAAAT-T
*
847115 AAATATATATT
1 AAATA-AAATT
847126 AAATAAAATT
1 AAATAAAATT
847136 GTATATCCAA
Statistics
Matches: 64, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
8 4 0.06
9 2 0.03
10 38 0.59
11 17 0.27
12 3 0.05
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (10 bp):
AAATAAAATT
Found at i:847082 original size:39 final size:39
Alignment explanation
Indices: 847039--847134 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 39
847029 TAAAATAAAT
847039 ATATAAAAATTAAATAAAATACAATTAAATAAAATGTAA
1 ATATAAAAATTAAATAAAATACAATTAAATAAAATGTAA
* *
847078 ATATATAAAA-AAAATTAAATACAATTAAATAAAATGTAA
1 ATATA-AAAATTAAATAAAATACAATTAAATAAAATGTAA
*
847117 ATAT--ATATTAAATAAAAT
1 ATATAAAAATTAAATAAAAT
847135 TGTATATCCA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
36 2 0.04
37 8 0.16
39 36 0.72
40 4 0.08
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (39 bp):
ATATAAAAATTAAATAAAATACAATTAAATAAAATGTAA
Found at i:851458 original size:129 final size:128
Alignment explanation
Indices: 851288--851531 Score: 364
Period size: 129 Copynumber: 1.9 Consensus size: 128
851278 ACTTATTCGT
* *
851288 CAAATGGCTATTATATAGTTTCTTTAAATATATTTATTTTCAACTCTTCTAACAAAAAAATCAAT
1 CAAATGGCTACTATATAGTTTCTTTAAATATATTTATTTTCAACTATTCTAACAAAAAAATCAAT
* * * *
851353 TAAGAAAT-AATTTTATTTTTAGTACGAAAAAATAACTTTATTTAGTTATTGTGTTCCATTTAA
66 CAAGAAATAAAATTT-TGTTTAGTACGAAAAAATAACTTTATTTAATTATTGTGTTCCATTTAA
* * *
851416 CAAATGGCTACTATATAGTTTTTTTTAAATATATTTATTTTCAATTATTTTAACAAAAAAATCAA
1 CAAATGGCTACTATATAG-TTTCTTTAAATATATTTATTTTCAACTATTCTAACAAAAAAATCAA
* *
851481 TCAAGAAATAAAATTTTGTTTAGTACTAAGAAATAACTTTATTTAATTATT
65 TCAAGAAATAAAATTTTGTTTAGTACGAAAAAATAACTTTATTTAATTATT
851532 AATATCTTTT
Statistics
Matches: 103, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
128 17 0.17
129 81 0.79
130 5 0.05
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.44
Consensus pattern (128 bp):
CAAATGGCTACTATATAGTTTCTTTAAATATATTTATTTTCAACTATTCTAACAAAAAAATCAAT
CAAGAAATAAAATTTTGTTTAGTACGAAAAAATAACTTTATTTAATTATTGTGTTCCATTTAA
Found at i:852929 original size:23 final size:23
Alignment explanation
Indices: 852878--852929 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
852868 GAATTATTTT
852878 TAAATATTATATTTAAATAAAAG
1 TAAATATTATATTTAAATAAAAG
* * *
852901 TGAATATTATTTTTAACATTAAA-
1 TAAATATTATATTTAA-ATAAAAG
852924 TAAATA
1 TAAATA
852930 AAAACATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (23 bp):
TAAATATTATATTTAAATAAAAG
Found at i:857424 original size:22 final size:20
Alignment explanation
Indices: 857397--857456 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
857387 TTTATATTTA
857397 TTTAT-TTTATATTTAAAATT
1 TTTATATTTATATTTAAAA-T
* *
857417 TTTATATTAACTATTTATAAT
1 TTTATATTTA-TATTTAAAAT
*
857438 TTTAAAATTTATATTTAAA
1 TTT-ATATTTATATTTAAA
857457 TATAAACATA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 5 0.16
21 14 0.44
22 13 0.41
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTATATTTATATTTAAAAT
Found at i:857432 original size:15 final size:14
Alignment explanation
Indices: 857381--857432 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
857371 CATCTTTTAA
857381 AATATTTTTATATT
1 AATATTTTTATATT
* *
857395 TATTTATTTTATATTT
1 AATAT-TTTTATA-TT
*
857411 AAAATTTTTATATT
1 AATATTTTTATATT
857425 AACTATTT
1 AA-TATTT
857433 ATAATTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
14 7 0.24
15 18 0.62
16 4 0.14
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (14 bp):
AATATTTTTATATT
Found at i:857712 original size:2 final size:2
Alignment explanation
Indices: 857705--857733 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
857695 TTAAATAAGC
857705 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
857734 GAAAAAATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:857833 original size:22 final size:21
Alignment explanation
Indices: 857783--857859 Score: 61
Period size: 21 Copynumber: 3.6 Consensus size: 21
857773 TTTTTAAGTA
*
857783 TTAAAATTTTTATATTAATAT
1 TTAAAAATTTTATATTAATAT
*
857804 TTATAAATTTTATAATTAA-ATT
1 TTAAAAATTTTAT-ATTAATA-T
*
857826 TTAAAAATATTT-T-TTATTAT
1 TTAAAAAT-TTTATATTAATAT
857846 TTAAATAATATTTA
1 TTAAA-AAT-TTTA
857860 GAGTAAACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
20 9 0.20
21 20 0.43
22 14 0.30
23 3 0.07
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTAAAAATTTTATATTAATAT
Found at i:857971 original size:11 final size:11
Alignment explanation
Indices: 857946--857987 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
857936 AATTTATTTA
*
857946 TAAATCAAA-T
1 TAAATTAAATT
*
857956 TAAATTATATT
1 TAAATTAAATT
857967 TAAATTAAATT
1 TAAATTAAATT
857978 TAAA-TAAATT
1 TAAATTAAATT
857988 ATTAATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 13 0.46
11 15 0.54
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (11 bp):
TAAATTAAATT
Found at i:859204 original size:14 final size:14
Alignment explanation
Indices: 859185--859230 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
859175 AATGAAAATA
859185 AGAAAAAAATTATT
1 AGAAAAAAATTATT
859199 AG-AAAAAA-TA--
1 AGAAAAAAATTATT
859209 AGAAAAAAATTATT
1 AGAAAAAAATTATT
859223 AGAAAAAA
1 AGAAAAAA
859231 TCAAAATCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
10 2 0.07
11 6 0.21
12 4 0.14
13 6 0.21
14 10 0.36
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.20
Consensus pattern (14 bp):
AGAAAAAAATTATT
Found at i:859206 original size:13 final size:13
Alignment explanation
Indices: 859188--859231 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
859178 GAAAATAAGA
859188 AAAAAATTATTAG
1 AAAAAATTATTAG
859201 AAAAAA-TA--AG
1 AAAAAATTATTAG
859211 AAAAAAATTATTAG
1 -AAAAAATTATTAG
859225 AAAAAAT
1 AAAAAAT
859232 CAAAATCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
10 2 0.07
11 6 0.22
12 4 0.15
13 13 0.48
14 2 0.07
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (13 bp):
AAAAAATTATTAG
Found at i:859208 original size:24 final size:24
Alignment explanation
Indices: 859179--859231 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
859169 TTAAATAATG
859179 AAAATAAGAAAAAAATTATTAGAA
1 AAAATAAGAAAAAAATTATTAGAA
859203 AAAATAAGAAAAAAATTATTAGAA
1 AAAATAAGAAAAAAATTATTAGAA
859227 AAAAT
1 AAAAT
859232 CAAAATCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.21
Consensus pattern (24 bp):
AAAATAAGAAAAAAATTATTAGAA
Found at i:859950 original size:19 final size:18
Alignment explanation
Indices: 859923--859980 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 18
859913 AAATATGATA
*
859923 ATTTGTATATTTGTATTAT
1 ATTTATATATTT-TATTAT
859942 ATTTATATATTTTATTAT
1 ATTTATATATTTTATTAT
* *
859960 -GTTATA-ATTATATT-T
1 ATTTATATATTTTATTAT
859975 ATTTAT
1 ATTTAT
859981 TTTAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
15 1 0.03
16 11 0.32
17 5 0.15
18 6 0.18
19 11 0.32
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (18 bp):
ATTTATATATTTTATTAT
Found at i:859964 original size:17 final size:19
Alignment explanation
Indices: 859928--859965 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
859918 TGATAATTTG
*
859928 TATATTTGTATTATATTTA
1 TATATTTGTATTATAGTTA
859947 TATATTT-TATTAT-GTTA
1 TATATTTGTATTATAGTTA
859964 TA
1 TA
859966 ATTATATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 6 0.33
19 7 0.39
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TATATTTGTATTATAGTTA
Found at i:859980 original size:21 final size:21
Alignment explanation
Indices: 859947--859993 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
859937 ATTATATTTA
859947 TATATTTTATTATGTTATAA-T
1 TATATTTTATTATGTTA-AATT
*
859968 TATA-TTTATTTATTTTAAATT
1 TATATTTTA-TTATGTTAAATT
859989 TATAT
1 TATAT
859994 AAATTTTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TATATTTTATTATGTTAAATT
Found at i:859995 original size:29 final size:29
Alignment explanation
Indices: 859937--859992 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
859927 GTATATTTGT
*
859937 ATTATATTTATATATTTTATTATGTTATA
1 ATTATATTTATATATTTTATAATGTTATA
*
859966 ATTATATTTATTTATTTTA-AAT-TTATA
1 ATTATATTTATATATTTTATAATGTTATA
859993 TAAATTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.20
28 2 0.08
29 18 0.72
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (29 bp):
ATTATATTTATATATTTTATAATGTTATA
Found at i:860050 original size:32 final size:33
Alignment explanation
Indices: 859969--860055 Score: 86
Period size: 32 Copynumber: 2.6 Consensus size: 33
859959 TGTTATAATT
* *
859969 ATATTTATTTATTTTAAATTTATATAAATTTTAAT
1 ATATTTA--TATTTTATATTTATATAAATTTTAAA
** * *
860004 ACGTTAATAATTTATA-TTATATAAATTTTAAA
1 ATATTTATATTTTATATTTATATAAATTTTAAA
860036 ATATTTATATTTTATTATTT
1 ATATTTATATTTTA-TATTT
860056 TTTATTATTT
Statistics
Matches: 40, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
32 25 0.62
33 9 0.22
34 2 0.05
35 4 0.10
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (33 bp):
ATATTTATATTTTATATTTATATAAATTTTAAA
Found at i:860063 original size:20 final size:20
Alignment explanation
Indices: 860040--860119 Score: 81
Period size: 19 Copynumber: 3.9 Consensus size: 20
860030 TTTAAAATAT
860040 TTATATTTTATTATTTTTTA
1 TTATATTTTATTATTTTTTA
*
860060 TTATTTTTTATTA-TTTTTA
1 TTATATTTTATTATTTTTTA
* * *
860079 TAATATTATATCATATTTTATA
1 TTATATTTTAT--TATTTTTTA
*
860101 TTATTTTTATATTATTTTT
1 TTATATTT-TATTATTTTT
860120 ATAATTTATA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
19 14 0.30
20 12 0.26
21 8 0.17
22 10 0.21
23 3 0.06
ACGTcount: A:0.28, C:0.01, G:0.00, T:0.71
Consensus pattern (20 bp):
TTATATTTTATTATTTTTTA
Found at i:860067 original size:11 final size:11
Alignment explanation
Indices: 860045--860119 Score: 59
Period size: 11 Copynumber: 7.2 Consensus size: 11
860035 AATATTTATA
860045 TTTTATTA-TT
1 TTTTATTATTT
860055 TTTTATTA-TT
1 TTTTATTATTT
860065 TTTTATTATTT
1 TTTTATTATTT
* * *
860076 TTATAATATTA
1 TTTTATTATTT
* *
860087 TATCA-TA-TT
1 TTTTATTATTT
*
860096 TTATATTATTT
1 TTTTATTATTT
*
860107 TTATATTATTT
1 TTTTATTATTT
860118 TT
1 TT
860120 ATAATTTATA
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
9 3 0.06
10 22 0.42
11 27 0.52
ACGTcount: A:0.27, C:0.01, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTATTATTT
Found at i:860137 original size:42 final size:41
Alignment explanation
Indices: 860051--860129 Score: 133
Period size: 41 Copynumber: 1.9 Consensus size: 41
860041 TATATTTTAT
*
860051 TATTTTTTATTATTTTTTATTATTTTTATAATATTATATCA
1 TATTTTATATTATTTTTTATTATTTTTATAATATTATATCA
860092 TATTTTATATTATTTTTATATTATTTTTATAAT-TTATA
1 TATTTTATATTATTTTT-TATTATTTTTATAATATTATA
860130 ATTATATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
41 21 0.58
42 15 0.42
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.68
Consensus pattern (41 bp):
TATTTTATATTATTTTTTATTATTTTTATAATATTATATCA
Found at i:860139 original size:11 final size:11
Alignment explanation
Indices: 860048--860122 Score: 88
Period size: 10 Copynumber: 7.2 Consensus size: 11
860038 ATTTATATTT
860048 TATTATTTTT-
1 TATTATTTTTA
860058 TATTATTTTT-
1 TATTATTTTTA
860068 TATTATTTTTA
1 TATTATTTTTA
*
860079 TA--A-TATTA
1 TATTATTTTTA
*
860087 TATCATATTTTA
1 TATTAT-TTTTA
860099 TATTATTTTTA
1 TATTATTTTTA
860110 TATTATTTTTA
1 TATTATTTTTA
860121 TA
1 TA
860123 ATTTATAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
8 6 0.11
9 1 0.02
10 21 0.37
11 20 0.35
12 9 0.16
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.69
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:862871 original size:38 final size:38
Alignment explanation
Indices: 862819--862951 Score: 185
Period size: 38 Copynumber: 3.5 Consensus size: 38
862809 TCAAAGAAAG
* ** *
862819 TTCAATTTGGAATTCTCTAGCCACCAGCCACCGGCCAAT
1 TTCAAATT-GAATTCTCTAGCCGTCAGCCGCCGGCCAAT
* * *
862858 TTCAAATTAAATTCTCTAGTCGTCAGCCGCCGACCAAT
1 TTCAAATTGAATTCTCTAGCCGTCAGCCGCCGGCCAAT
*
862896 TTCAAATTGAATTCTCTAGCCGTCAGCCGCCAGCCAAT
1 TTCAAATTGAATTCTCTAGCCGTCAGCCGCCGGCCAAT
862934 TTCAAATTGAATTCTCTA
1 TTCAAATTGAATTCTCTA
862952 ATCGTCAACT
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
38 76 0.92
39 7 0.08
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.29
Consensus pattern (38 bp):
TTCAAATTGAATTCTCTAGCCGTCAGCCGCCGGCCAAT
Found at i:868923 original size:11 final size:10
Alignment explanation
Indices: 868910--868989 Score: 65
Period size: 10 Copynumber: 7.7 Consensus size: 10
868900 TAAATATATA
868910 AAAATTAAAT
1 AAAATTAAAT
868920 AAAATGTAAAT
1 AAAAT-TAAAT
*
868931 ATATAA-AAAAT
1 A-A-AATTAAAT
868942 -AAATTAAAT
1 AAAATTAAAT
*
868951 ACAATTAAAT
1 AAAATTAAAT
868961 AAAATGTAAAT
1 AAAAT-TAAAT
* *
868972 ATATATTCAAT
1 A-AAATTAAAT
868983 AAAATTA
1 AAAATTA
868990 TATATCTAAA
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
8 2 0.04
9 5 0.09
10 21 0.38
11 21 0.38
12 4 0.07
13 2 0.04
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (10 bp):
AAAATTAAAT
Found at i:868933 original size:26 final size:26
Alignment explanation
Indices: 868900--868950 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
868890 ATTTATTCAA
*
868900 TAAATATATAAAAATTAAATAAAATG
1 TAAATATATAAAAAATAAATAAAATG
*
868926 TAAATATATAAAAAATAAATTAAAT
1 TAAATATATAAAAAATAAATAAAAT
868951 ACAATTAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (26 bp):
TAAATATATAAAAAATAAATAAAATG
Found at i:868984 original size:41 final size:41
Alignment explanation
Indices: 868893--868985 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
868883 CAATTGCATT
868893 TATTCAATAAATATATAAAAATTAAATAAAATGTAAATATA
1 TATTCAATAAATATATAAAAATTAAATAAAATGTAAATATA
***
868934 TAAAAAATAAAT-TA-AATACAATTAAATAAAATGTAAATATA
1 TATTCAATAAATATATAA-A-AATTAAATAAAATGTAAATATA
868975 TATTCAATAAA
1 TATTCAATAAA
868986 ATTATATATC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
39 2 0.05
40 3 0.07
41 39 0.89
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (41 bp):
TATTCAATAAATATATAAAAATTAAATAAAATGTAAATATA
Found at i:871851 original size:13 final size:13
Alignment explanation
Indices: 871833--871857 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
871823 CATAAAGTGT
871833 TGTATCGATACAA
1 TGTATCGATACAA
871846 TGTATCGATACA
1 TGTATCGATACA
871858 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:871869 original size:32 final size:33
Alignment explanation
Indices: 871817--871881 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
871807 ACGATTTGTC
871817 TCGAAACATAAAGTGTTGTATCGATACAATGTA
1 TCGAAACATAAAGTGTTGTATCGATACAATGTA
* *
871850 TCGATACAT-AAGTTTTGTATCGATACAATGTA
1 TCGAAACATAAAGTGTTGTATCGATACAATGTA
871882 AGCTACTGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 22 0.73
33 8 0.27
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (33 bp):
TCGAAACATAAAGTGTTGTATCGATACAATGTA
Found at i:871937 original size:13 final size:13
Alignment explanation
Indices: 871919--871943 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
871909 ATTACTCAAA
871919 TGTATCGATACAT
1 TGTATCGATACAT
871932 TGTATCGATACA
1 TGTATCGATACA
871944 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:871995 original size:52 final size:52
Alignment explanation
Indices: 871952--872080 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
871942 CACTGATCTT
* * *
871952 TGTATTGATACATGCAGGCAAGTTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
*
872004 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
872056 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
872081 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCAAGATGTATCGATACACTATAAAA
Found at i:875530 original size:16 final size:16
Alignment explanation
Indices: 875484--875533 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
875474 AAGAATAAGT
875484 TCATAAAAAATATTGA
1 TCATAAAAAATATTGA
**
875500 TCAT---TTATGATTGA
1 TCATAAAAAAT-ATTGA
875514 TCATAAAAAATATTGA
1 TCATAAAAAATATTGA
875530 TCAT
1 TCAT
875534 TTATGACAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 2 0.08
14 9 0.35
16 13 0.50
17 2 0.08
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (16 bp):
TCATAAAAAATATTGA
Found at i:876973 original size:25 final size:25
Alignment explanation
Indices: 876940--876987 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
876930 TACACTGCTA
*
876940 CAAACCACTTCCCACAAAAACACCT
1 CAAAACACTTCCCACAAAAACACCT
876965 CAAAACACTTCCCACAAAAACAC
1 CAAAACACTTCCCACAAAAACAC
876988 TTCCCATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.42, G:0.00, T:0.10
Consensus pattern (25 bp):
CAAAACACTTCCCACAAAAACACCT
Found at i:876998 original size:14 final size:15
Alignment explanation
Indices: 876966--877002 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
876956 AAAACACCTC
876966 AAAACACTTCCCACA
1 AAAACACTTCCCACA
*
876981 AAAACACTTCCCATA
1 AAAACACTTCCCACA
876996 AAAACAC
1 AAAACAC
877003 CTCAAAACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (15 bp):
AAAACACTTCCCACA
Found at i:890379 original size:19 final size:19
Alignment explanation
Indices: 890357--890415 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
890347 GTGTCTTTCG
890357 CAAAAAAAAAATAACAAAA
1 CAAAAAAAAAATAACAAAA
*
890376 CAAAAAAAGAAA-GACAAAAA
1 CAAAAAAA-AAATAAC-AAAA
*
890396 AACAAAAAAAAATAACAAAA
1 CA-AAAAAAAAATAACAAAA
890416 AAGGGTTCGG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 10 0.30
20 15 0.45
21 8 0.24
ACGTcount: A:0.83, C:0.10, G:0.03, T:0.03
Consensus pattern (19 bp):
CAAAAAAAAAATAACAAAA
Found at i:890383 original size:22 final size:22
Alignment explanation
Indices: 890358--890417 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
890348 TGTCTTTCGC
* *
890358 AAAAAAAAAATAACAAAACAAA
1 AAAAAAAAAACAAAAAAACAAA
* *
890380 AAAAGAAAGACAAAAAAAC-AA
1 AAAAAAAAAACAAAAAAACAAA
*
890401 AAAAAAATAACAAAAAA
1 AAAAAAAAAACAAAAAA
890418 GGGTTCGGAT
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 16 0.52
22 15 0.48
ACGTcount: A:0.85, C:0.08, G:0.03, T:0.03
Consensus pattern (22 bp):
AAAAAAAAAACAAAAAAACAAA
Found at i:890416 original size:14 final size:13
Alignment explanation
Indices: 890357--890417 Score: 68
Period size: 14 Copynumber: 4.5 Consensus size: 13
890347 GTGTCTTTCG
890357 CAAAAAAAAAATAA
1 CAAAAAAAAAA-AA
*
890371 CAAAACAAAAAAA
1 CAAAAAAAAAAAA
* *
890384 GAAAGACAAAAAAA
1 CAAA-AAAAAAAAA
*
890398 CAAAAAAAAATAA
1 CAAAAAAAAAAAA
890411 CAAAAAA
1 CAAAAAA
890418 GGGTTCGGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
13 19 0.46
14 22 0.54
ACGTcount: A:0.84, C:0.10, G:0.03, T:0.03
Consensus pattern (13 bp):
CAAAAAAAAAAAA
Found at i:891893 original size:28 final size:28
Alignment explanation
Indices: 891853--892009 Score: 156
Period size: 28 Copynumber: 5.6 Consensus size: 28
891843 ATTCCTTACA
891853 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * *
891881 CTTTTCGAAGCCCACAACTCAATGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
891909 CTTTTTAAAGCCCACAAATCGGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* * **
891938 CCTTTCAAAGCCCACAAGTTAGTAACAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
891966 CTTTTCAAAGCCCACAAGACAATGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
891995 C--TTCAAAAGCCCACA
1 CTTTTC-AAAGCCCACA
892010 CAAGTTGGTG
Statistics
Matches: 103, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
27 3 0.03
28 77 0.75
29 23 0.22
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.21
Consensus pattern (28 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:891976 original size:57 final size:56
Alignment explanation
Indices: 891853--892009 Score: 156
Period size: 57 Copynumber: 2.8 Consensus size: 56
891843 ATTCCTTACA
* * * ** *
891853 CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCGAAGCCCACAACTCAATGGCAT
1 CTTTTCAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACAACTCAATAACAC
* * * * *
891909 CTTTTTAAAGCCCACAAATCGGTGGCACCCCTTTCAAAGCCCACAAGTTAGTAACAC
1 CTTTTCAAAGCCCACAAATCAGTGGCA-CCCTTTCAAAGCCCACAACTCAATAACAC
* *
891966 CTTTTCAAAGCCCACAAGA-CAATGGCAACC-TTCAAAAGCCCACA
1 CTTTTCAAAGCCCACAA-ATCAGTGGCACCCTTTC-AAAGCCCACA
892010 CAAGTTGGTG
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
55 3 0.04
56 36 0.43
57 43 0.52
58 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.21
Consensus pattern (56 bp):
CTTTTCAAAGCCCACAAATCAGTGGCACCCTTTCAAAGCCCACAACTCAATAACAC
Found at i:892080 original size:49 final size:49
Alignment explanation
Indices: 892026--892543 Score: 479
Period size: 49 Copynumber: 10.7 Consensus size: 49
892016 GGTGGCATCT
* *
892026 TCTTTAAGTCCAATGTCG-TCGGTCTTGAATCAGCACATTGGCACCTTCA
1 TCTTTAAGTCCAATGTCGCT-GGCCTTGAATCAGCATATTGGCACCTTCA
* **
892075 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTCGTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-T--TCA
* * ** * * * *
892127 TCTCTAAGACTGATGTCACTAGCCTTGAATCAGCACATTGGCATCTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
*
892176 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * *
892225 TCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-T--TCA
** * * *
892277 TCTTTAAAACCAAGGTCGCCGGCCTTGAATCAGCACATTGG------CA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* *
892320 ----TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTT-A
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* *
892364 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACTTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* * * ** *
892413 TCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATATTTAA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CCTTCA
* * * ** * *
892463 TATTCCTAAGCCCAATGTCGCTGGCTTTGTCTCAGCACATTGGCA--TTCT
1 TCTT--TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
* *
892512 TCTTCAAGTCCAATGTCGCTGGCCATGAATCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCA
892544 ACGCATTGTC
Statistics
Matches: 379, Mismatches: 69, Indels: 44
0.77 0.14 0.09
Matches are distributed among these distances:
39 30 0.08
43 2 0.01
44 1 0.00
47 22 0.06
48 39 0.10
49 169 0.45
50 10 0.03
51 1 0.00
52 105 0.28
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCA
Found at i:892223 original size:101 final size:98
Alignment explanation
Indices: 892049--892507 Score: 420
Period size: 101 Copynumber: 4.7 Consensus size: 98
892039 TGTCGTCGGT
* * * * *
892049 CTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
1 CTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT
* * * *
892114 GGTGC-CTTCGTCATCTCTAAGACTGATGTCACTAGC
66 -G-GCACTT--TCATCTCTAAGACCGATATCGCTGGC
* *
892150 CTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATT
1 CTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT
* * * * *
892215 GGCACCTTCATCTTTAAGTCCAATATCGTTGGC
66 GGCACTTTCATCTCTAAGACCGATATCGCTGGC
* * * * *
892248 CTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAACCAAGGTCGCCGGCCTTGAATCAGCAC
1 CTTGAATCAGCATATT-G-G-CATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
* *
892313 ATTGG------CA----TAAGTCCAATATCGCTGGC
63 ATTGGCACTTTCATCTCTAAGACCGATATCGCTGGC
* * *
892339 CTTGAATCAACATATTGGCACCTT-ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATT
1 CTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT
* * *
892403 GGCACTTTCATCTTTAAGTCCGATATCGTTGGC
66 GGCACTTTCATCTCTAAGACCGATATCGCTGGC
* * * * * **
892436 CTTGAATCAGCATATTGGCATATTTAATATTCCTAAGCCCAATGTCGCTGGCTTTGTCTCAGCAC
1 CTTGAATCAGCATATTGGCAT-CTTCATCTT--TAAGACCAATGTCGCTGGCCTTGAATCAGCAC
892501 ATTGGCA
63 ATTGGCA
892508 TTCTTCTTCA
Statistics
Matches: 301, Mismatches: 39, Indels: 36
0.80 0.10 0.10
Matches are distributed among these distances:
87 38 0.13
88 3 0.01
89 1 0.00
90 1 0.00
91 33 0.11
93 2 0.01
95 2 0.01
97 36 0.12
98 35 0.12
99 7 0.02
100 4 0.01
101 139 0.46
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (98 bp):
CTTGAATCAGCATATTGGCATCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT
GGCACTTTCATCTCTAAGACCGATATCGCTGGC
Found at i:892302 original size:150 final size:149
Alignment explanation
Indices: 892026--892543 Score: 591
Period size: 150 Copynumber: 3.5 Consensus size: 149
892016 GGTGGCATCT
*
892026 TCTTTAAGTCCAATGTCG-TCGGTCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATA
1 TCTTTAAGTCCAATGTCGCT-GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATA
* * * * *
892090 TCGCTGGCCTTGAATCAGCATATTGGTGCCTTCGTCATCTCTAAGACTGATGTCACTAGCCTTGA
65 TCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGACCGATGTCGCTGGCCTTGA
892155 ATCAGCACATTGGCATCTTCA
130 ATCAGCACATTGGCAT-TTCA
892176 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
* * * * *
892241 CGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAACCAAGGTCGCCGGCCTTGAA
66 CGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGACCGATGTCGCTGGCCTTGAA
892306 TCAGCACATTGG-----CA
131 TCAGCACATTGGCATTTCA
* * * * *
892320 ----TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTT-ATCTTTAAGACCAATGT
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
* * * *
892380 CGCTGGCCTTGAATCAGCATATTGGC-ACTT--TCATCTTTAAGTCCGATATCGTTGGCCTTGAA
66 CGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGACCGATGTCGCTGGCCTTGAA
* *
892442 TCAGCATATTGGCATATTTAA
131 TCAGCACATTGGC--ATTTCA
* * * ** * *
892463 TATTCCTAAGCCCAATGTCGCTGGCTTTGTCTCAGCACATTGGCA--TTCTTCTTCAAGTCCAAT
1 TCTT--TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
* *
892526 GTCGCTGGCCATGAATCA
64 ATCGCTGGCCTTGAATCA
892544 ACGCATTGTC
Statistics
Matches: 315, Mismatches: 38, Indels: 32
0.82 0.10 0.08
Matches are distributed among these distances:
136 36 0.11
138 3 0.01
139 40 0.13
140 40 0.13
143 1 0.00
144 2 0.01
147 2 0.01
148 29 0.09
149 32 0.10
150 129 0.41
151 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (149 bp):
TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATAT
CGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGACCGATGTCGCTGGCCTTGAA
TCAGCACATTGGCATTTCA
Found at i:892404 original size:87 final size:90
Alignment explanation
Indices: 892229--892406 Score: 263
Period size: 87 Copynumber: 2.0 Consensus size: 90
892219 CCTTCATCTT
* * *
892229 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAAACCAAGGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTC-TCATCTTTAAAACCAAGGTC
892294 GCCGGCCTTGAATCAGCACATTGGCA
65 GCCGGCCTTGAATCAGCACATTGGCA
* *
892320 TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACC-T-T-ATCTTTAAGACCAATGTCG
1 TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCTCATCTTTAAAACCAAGGTCG
* *
892382 CTGGCCTTGAATCAGCATATTGGCA
66 CCGGCCTTGAATCAGCACATTGGCA
892407 CTTTCATCTT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
87 40 0.50
88 1 0.01
90 1 0.01
91 38 0.47
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (90 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCTCATCTTTAAAACCAAGGTCG
CCGGCCTTGAATCAGCACATTGGCA
Found at i:892500 original size:188 final size:188
Alignment explanation
Indices: 892148--892508 Score: 510
Period size: 188 Copynumber: 1.9 Consensus size: 188
892138 GATGTCACTA
* * *
892148 GCCTTGAATCAGCACATTGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACA
1 GCCTTGAATCAACACATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACA
* * *
892213 TTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
66 TTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACATTC-TAAT
*
892278 CTTTAAAACCAAGGTCGCCGGCCTTGAATCAGCACATTGGCATAAGTCCAATATCGCTG
130 ATTTAAAACCAAGGTCGCCGGCCTTGAATCAGCACATTGGCATAAGTCCAATATCGCTG
* *
892337 GCCTTGAATCAACATATTGGCACCTT-ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATA
1 GCCTTGAATCAACACATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACA
* * *
892401 TTGGCACTTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATATT-TAATA
66 TTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACATTCTAATA
** * * * **
892465 TTCCTAAGCCCAATGTCGCTGGCTTTGTCTCAGCACATTGGCAT
131 TT--TAAAACCAAGGTCGCCGGCCTTGAATCAGCACATTGGCAT
892509 TCTTCTTCAA
Statistics
Matches: 151, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
186 5 0.03
188 123 0.81
189 23 0.15
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (188 bp):
GCCTTGAATCAACACATTGGCACCTTCATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACA
TTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACATTCTAATA
TTTAAAACCAAGGTCGCCGGCCTTGAATCAGCACATTGGCATAAGTCCAATATCGCTG
Found at i:896850 original size:20 final size:21
Alignment explanation
Indices: 896812--896850 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
896802 TTTAAAAATA
* *
896812 AATACAAATAATTTTATTTTT
1 AATACAAATAACTTAATTTTT
896833 AATA-AAATAACTTAATTT
1 AATACAAATAACTTAATTT
896851 GATTTATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
AATACAAATAACTTAATTTTT
Found at i:898553 original size:20 final size:21
Alignment explanation
Indices: 898525--898576 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
898515 AATAAATAAA
898525 AATATTATTATTTTAT-ATTTT
1 AATA-TATTATTTTATAATTTT
*
898546 AATATATT-TATTATAATTTT
1 AATATATTATTTTATAATTTT
*
898566 AAGATATTATT
1 AATATATTATT
898577 AATAAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 5 0.19
20 16 0.62
21 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
AATATATTATTTTATAATTTT
Found at i:898581 original size:20 final size:20
Alignment explanation
Indices: 898537--898577 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
898527 TATTATTATT
*
898537 TTAT-ATTTTAATATATTTA
1 TTATAATTTTAAGATATTTA
898556 TTATAATTTTAAGATA-TTA
1 TTATAATTTTAAGATATTTA
898575 TTA
1 TTA
898578 ATAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TTATAATTTTAAGATATTTA
Found at i:898954 original size:16 final size:16
Alignment explanation
Indices: 898933--898969 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 16
898923 TACTAAAATT
898933 TAAAAAATTATAATTAA
1 TAAAAAATTATAA-TAA
898950 TAAAAAATTATAATAA
1 TAAAAAATTATAATAA
898966 TAAA
1 TAAA
898970 GGATAACCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAAAATTATAATAA
Found at i:902098 original size:30 final size:30
Alignment explanation
Indices: 902063--902121 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
902053 AATTAACTTA
*
902063 AGTAATTTAATTT-ATTAATAA-TAAAAATTC
1 AGTAATGTAATTTGA-TAA-AATTAAAAATTC
902093 AGTAATGTAATTTGATAAAATTAAAAATT
1 AGTAATGTAATTTGATAAAATTAAAAATT
902122 TATGATTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 2 0.08
30 23 0.88
31 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.41
Consensus pattern (30 bp):
AGTAATGTAATTTGATAAAATTAAAAATTC
Found at i:902566 original size:16 final size:18
Alignment explanation
Indices: 902547--902587 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
902537 CTAATATTTT
*
902547 TATTAAATATTTA-TT-A
1 TATTAAATACTTATTTAA
*
902563 TATTTAATACTTATTTAA
1 TATTAAATACTTATTTAA
902581 TATTAAA
1 TATTAAA
902588 ATAATTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 11 0.55
17 2 0.10
18 7 0.35
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTAAATACTTATTTAA
Found at i:902615 original size:35 final size:37
Alignment explanation
Indices: 902560--902635 Score: 95
Period size: 35 Copynumber: 2.1 Consensus size: 37
902550 TAAATATTTA
* *
902560 TTATATTTAATACTTATTT-AATATTAAAATAATTTAAT
1 TTATATTTAATA-TTATTTAAAAATT-AAATAATCTAAT
902598 TTATATTTAAT-TT-TTTAAAAATTAAATAATCTAAT
1 TTATATTTAATATTATTTAAAAATTAAATAATCTAAT
902633 TTA
1 TTA
902636 ATCGATCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 17 0.49
36 7 0.20
38 11 0.31
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (37 bp):
TTATATTTAATATTATTTAAAAATTAAATAATCTAAT
Found at i:903319 original size:2 final size:2
Alignment explanation
Indices: 903312--903361 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
903302 CAAAATCCCC
903312 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
903354 CT CT CT CT
1 CT CT CT CT
903362 ATCTATATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:905139 original size:2 final size:2
Alignment explanation
Indices: 905134--905175 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
905124 AGTTTATTTC
905134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
905176 GTACACACAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:906007 original size:32 final size:33
Alignment explanation
Indices: 905943--906015 Score: 87
Period size: 32 Copynumber: 2.2 Consensus size: 33
905933 ATAAAATATG
905943 ATATAAAAAAATAATTTGAAAATGTGTAAAAATTT
1 ATATAAAAAAATAATTT--AAATGTGTAAAAATTT
*
905978 ATATAAAATAAATAATTT-AA-GTGTCAAAATTT
1 ATATAAAA-AAATAATTTAAATGTGTAAAAATTT
*
906010 AAATAA
1 ATATAA
906016 GTATATAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 16 0.46
33 2 0.06
35 8 0.23
36 9 0.26
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.34
Consensus pattern (33 bp):
ATATAAAAAAATAATTTAAATGTGTAAAAATTT
Found at i:907697 original size:25 final size:23
Alignment explanation
Indices: 907658--907706 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
907648 TATTAAAAAG
**
907658 ATATTTTAATTTTAATATTTTAAAT
1 ATATTTTAAAATTAA-A-TTTAAAT
907683 ATATTTTAAAATTAAATTTAAAT
1 ATATTTTAAAATTAAATTTAAAT
907706 A
1 A
907707 AAAATAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 8 0.36
24 1 0.05
25 13 0.59
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
ATATTTTAAAATTAAATTTAAAT
Found at i:908389 original size:24 final size:24
Alignment explanation
Indices: 908361--908412 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
908351 TTTTTTATAT
*
908361 TTAAATAGTAAATTTAATATAA-AA
1 TTAAATAGTAAATATAAT-TAATAA
*
908385 TTAAATATTAAATATAATTAATAA
1 TTAAATAGTAAATATAATTAATAA
908409 TTAA
1 TTAA
908413 CAAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 3 0.12
24 22 0.88
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (24 bp):
TTAAATAGTAAATATAATTAATAA
Found at i:913023 original size:34 final size:34
Alignment explanation
Indices: 912971--913038 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
912961 ACCTGCACAT
*
912971 ATTATTTTACCAGAACATATACATGCATATCAAA
1 ATTATTTTACCAGAACATACACATGCATATCAAA
* *
913005 ATTATTTTAGCAGTACATACACATGCATATCAAA
1 ATTATTTTACCAGAACATACACATGCATATCAAA
913039 TATTCATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (34 bp):
ATTATTTTACCAGAACATACACATGCATATCAAA
Found at i:916285 original size:15 final size:15
Alignment explanation
Indices: 916244--916285 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
916234 GTTAAATGAA
*
916244 TAAAAATTAAATTTT
1 TAAAAATTATATTTT
916259 TAAAAA-TATATTTT
1 TAAAAATTATATTTT
*
916273 TAAAAATTTTATT
1 TAAAAATTATATT
916286 AAAAGAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.54
15 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAAAATTATATTTT
Found at i:917148 original size:17 final size:19
Alignment explanation
Indices: 917112--917150 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
917102 TTTTAAATAA
917112 ATTTTATTAATTATAATTTT
1 ATTTTATTAA-TATAATTTT
917132 ATTTTATTAA-A-AATTTT
1 ATTTTATTAATATAATTTT
917149 AT
1 AT
917151 AAATATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
20 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTTATTAATATAATTTT
Found at i:917378 original size:17 final size:17
Alignment explanation
Indices: 917345--917378 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
917335 ATTTTACGTG
* *
917345 TTTATATTTATATTATT
1 TTTATATTTAAAATATT
917362 TTTATATTTAAAATATT
1 TTTATATTTAAAATATT
917379 ATATTTTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTATATTTAAAATATT
Found at i:917379 original size:20 final size:20
Alignment explanation
Indices: 917354--917395 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
917344 GTTTATATTT
*
917354 ATATTAT-TTTTATATTTAAA
1 ATATTATATTTT-TATATAAA
917374 ATATTATATTTTTATATAAA
1 ATATTATATTTTTATATAAA
917394 AT
1 AT
917396 TTTTACATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATATTATATTTTTATATAAA
Found at i:917764 original size:12 final size:12
Alignment explanation
Indices: 917749--917795 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
917739 AGAGAAAGAT
917749 GAAAAGAAAAAA
1 GAAAAGAAAAAA
917761 GAAAAGAAAAAA
1 GAAAAGAAAAAA
*
917773 -AAGAGAGAACAAA
1 GAA-A-AGAAAAAA
*
917786 TAAAAGAAAA
1 GAAAAGAAAA
917796 TTTGATATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 2 0.07
12 18 0.60
13 8 0.27
14 2 0.07
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (12 bp):
GAAAAGAAAAAA
Found at i:917941 original size:11 final size:12
Alignment explanation
Indices: 917910--917943 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
917900 CGTATCATAT
917910 TTATTTTTTATA
1 TTATTTTTTATA
*
917922 TTATGTTTTA-A
1 TTATTTTTTATA
917933 TTATTTTTTAT
1 TTATTTTTTAT
917944 GTCATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
TTATTTTTTATA
Found at i:917953 original size:23 final size:23
Alignment explanation
Indices: 917910--917967 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
917900 CGTATCATAT
* *
917910 TTATTTTTTATATTATGTTTTAA
1 TTATTTTTTATATCATATTTTAA
* *
917933 TTATTTTTTATGTCATATTTTTA
1 TTATTTTTTATATCATATTTTAA
*
917956 TT-TTTTGTATAT
1 TTATTTTTTATAT
917968 TTAAAGTAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
22 8 0.28
23 21 0.72
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (23 bp):
TTATTTTTTATATCATATTTTAA
Found at i:918338 original size:17 final size:18
Alignment explanation
Indices: 918318--918358 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
918308 AATTATTATT
918318 TAATAAAATTTATT-TT-A
1 TAATAAAATTT-TTATTAA
*
918335 TAATTAAATTTTTATTAA
1 TAATAAAATTTTTATTAA
918353 TAATAA
1 TAATAA
918359 TTAAAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 2 0.10
17 12 0.60
18 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATAAAATTTTTATTAA
Found at i:918375 original size:18 final size:21
Alignment explanation
Indices: 918334--918376 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
918324 AATTTATTTT
*
918334 ATAATTAAATTTTTATTAATA
1 ATAATTAAATATTTATTAATA
918355 ATAATTAAA-ATTTA-TAA-A
1 ATAATTAAATATTTATTAATA
918373 ATAA
1 ATAA
918377 AAATAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 5 0.24
19 3 0.14
20 4 0.19
21 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAATTAAATATTTATTAATA
Found at i:918375 original size:21 final size:22
Alignment explanation
Indices: 918334--918385 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 22
918324 AATTTATTTT
* *
918334 ATAATT-AAATTTTTATTAATA
1 ATAATTAAAATTTATATAAATA
918355 ATAATTAAAATTTATA-AAATA
1 ATAATTAAAATTTATATAAATA
* *
918376 AAAATAAAAA
1 ATAATTAAAA
918386 ATTCCAACGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
ATAATTAAAATTTATATAAATA
Found at i:918454 original size:2 final size:2
Alignment explanation
Indices: 918416--918446 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
918406 ACTATAATGC
918416 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
918447 AAATATATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:918910 original size:14 final size:14
Alignment explanation
Indices: 918877--918928 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
918867 CTTAATAAAA
*
918877 AAAATATTAAATGATT
1 AAAA-ATTAAAT-TTT
918893 AAAAATTAAATTTT
1 AAAAATTAAATTTT
* *
918907 AAAAAGTATATTTTT
1 AAAAATTA-AATTTT
918922 AAAAATT
1 AAAAATT
918929 TTATTAAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
14 9 0.29
15 18 0.58
16 4 0.13
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (14 bp):
AAAAATTAAATTTT
Found at i:919077 original size:21 final size:21
Alignment explanation
Indices: 919053--919093 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
919043 CAATATATAT
919053 TATGTTAATAA-ATTACTTGAA
1 TATGTTAATAACA-TACTTGAA
919074 TATGTTAATAACATACTTGA
1 TATGTTAATAACATACTTGA
919094 GTTAACATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (21 bp):
TATGTTAATAACATACTTGAA
Found at i:919644 original size:16 final size:17
Alignment explanation
Indices: 919623--919654 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
919613 TTCTGTCATA
919623 TTCATATTAT-TTTTAT
1 TTCATATTATATTTTAT
919639 TTCATATTATATTTTA
1 TTCATATTATATTTTA
919655 ATTATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (17 bp):
TTCATATTATATTTTAT
Found at i:919803 original size:17 final size:19
Alignment explanation
Indices: 919767--919805 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
919757 TTTTAAATAA
919767 ATTTTATTAATTATAATTTT
1 ATTTTATTAA-TATAATTTT
919787 ATTTTATTAA-A-AATTTT
1 ATTTTATTAATATAATTTT
919804 AT
1 AT
919806 AAATATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
20 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
ATTTTATTAATATAATTTT
Found at i:920017 original size:34 final size:34
Alignment explanation
Indices: 919979--920061 Score: 89
Period size: 35 Copynumber: 2.4 Consensus size: 34
919969 CGTGGTTATA
919979 TTTATAT-TATTTTTTATAT-TTAAAATATTATATT
1 TTTATATATATTTTTTATATATTAAAA-ATTA-ATT
* * *
920013 TTTATATAAAATTTTTATATATTAATAATTAATTT
1 TTTATATATATTTTTTATATATTAAAAATTAA-TT
*
920048 TTTATGTATATTTT
1 TTTATATATATTTT
920062 CATATGTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
34 8 0.20
35 27 0.68
36 5 0.12
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (34 bp):
TTTATATATATTTTTTATATATTAAAAATTAATT
Found at i:920032 original size:21 final size:21
Alignment explanation
Indices: 919982--920024 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
919972 GGTTATATTT
919982 ATATTAT-TTTTTATATTTAAA
1 ATATTATATTTTTATA-TTAAA
920003 ATATTATATTTTTATA-TAAA
1 ATATTATATTTTTATATTAAA
920023 AT
1 AT
920025 TTTTATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.29
21 7 0.33
22 8 0.38
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
ATATTATATTTTTATATTAAA
Found at i:920977 original size:18 final size:19
Alignment explanation
Indices: 920954--921001 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 19
920944 TATTATTTAA
*
920954 TAAAATTTATT-TTATAAT
1 TAAAATTTATTATAATAAT
920972 TAAAATTTTATTAATAATAAT
1 TAAAA-TTTATT-ATAATAAT
920993 TAAAATTTA
1 TAAAATTTA
921002 CAAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 5 0.19
19 6 0.23
20 4 0.15
21 11 0.42
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TAAAATTTATTATAATAAT
Found at i:921008 original size:21 final size:21
Alignment explanation
Indices: 920967--921009 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
920957 AATTTATTTT
**
920967 ATAATTAAAATTTTATTAATA
1 ATAATTAAAATTTTAAAAATA
920988 ATAATTAAAA-TTTACAAAATA
1 ATAATTAAAATTTTA-AAAATA
921009 A
1 A
921010 AAAAAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAATTAAAATTTTAAAAATA
Found at i:922161 original size:16 final size:17
Alignment explanation
Indices: 922129--922163 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
922119 AAAATATTAT
922129 ATATAATATTGATAATA
1 ATATAATATTGATAATA
*
922146 ATATAA-ATTTATAATA
1 ATATAATATTGATAATA
922162 AT
1 AT
922164 GTGAGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
ATATAATATTGATAATA
Found at i:922484 original size:16 final size:15
Alignment explanation
Indices: 922422--922485 Score: 65
Period size: 16 Copynumber: 3.9 Consensus size: 15
922412 AATTATTTTT
922422 AATTATTATTAAATTA
1 AATTATTATT-AATTA
*
922438 AATTATTAATAAGTTTA
1 AATTATTATTAA--TTA
*
922455 AACTTATTTTTAATTA
1 AA-TTATTATTAATTA
922471 AATTATATATTAATT
1 AATTAT-TATTAATT
922486 TTGAAATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
15 6 0.15
16 21 0.52
17 5 0.12
18 8 0.20
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
AATTATTATTAATTA
Found at i:922509 original size:23 final size:22
Alignment explanation
Indices: 922458--922510 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
922448 AAGTTTAAAC
* *
922458 TTATTTTTAATTAAATTATATA
1 TTATTTTGAAATAAATTATATA
922480 TTAATTTTGAAATAAATT-TATTAA
1 TT-ATTTTGAAATAAATTATA-T-A
922504 TTATTTT
1 TTATTTT
922511 ATTTTAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 4 0.15
23 19 0.73
24 3 0.12
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TTATTTTGAAATAAATTATATA
Found at i:922524 original size:22 final size:23
Alignment explanation
Indices: 922494--922537 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
922484 TTTTGAAATA
*
922494 AATTTATTAATTATT-TTATTTT
1 AATTAATTAATTATTATTATTTT
922516 AATTAATTAATTATTATTATTT
1 AATTAATTAATTATTATTATTT
922538 AAAAATTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
AATTAATTAATTATTATTATTTT
Found at i:922539 original size:14 final size:15
Alignment explanation
Indices: 922497--922539 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 15
922487 TGAAATAAAT
*
922497 TTATTAATTATTTTA
1 TTATTAATTATTTAA
*
922512 TT-TTAATTAATTAA
1 TTATTAATTATTTAA
922526 TTATT-ATTATTTAA
1 TTATTAATTATTTAA
922540 AAATTTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTATTAATTATTTAA
Found at i:922548 original size:22 final size:22
Alignment explanation
Indices: 922499--922544 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
922489 AAATAAATTT
*
922499 ATTAATTATTTTATTTTAATTA
1 ATTAATTATTTTATTTTAATAA
922521 ATTAATTATTATTA-TTTAA-AA
1 ATTAATTATT-TTATTTTAATAA
922542 ATT
1 ATT
922545 TAATGTTACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 15 0.68
23 3 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATTAATTATTTTATTTTAATAA
Found at i:922978 original size:31 final size:29
Alignment explanation
Indices: 922927--922987 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
922917 CTCGAACTTT
*
922927 AAAATATATTTAACATATTTACTTGAATA
1 AAAATATATTTAACATATTTAATTGAATA
* *
922956 AAAATATTATTTAATTATATTTAATTTAATA
1 AAAATA-TATTTAA-CATATTTAATTGAATA
922987 A
1 A
922988 TAATTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 6 0.22
30 7 0.26
31 14 0.52
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (29 bp):
AAAATATATTTAACATATTTAATTGAATA
Found at i:923132 original size:28 final size:26
Alignment explanation
Indices: 923094--923159 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 26
923084 ACTCCACGTC
923094 AAATTCTAAAAAAAAATAATATTA-TTT
1 AAATT-TAAAAAAAAATAA-ATTATTTT
*
923121 AAATTTTAAAAAAAATTAAATTATTTTT
1 AAA-TTTAAAAAAAAATAAATTA-TTTT
923149 AAATTTAAAAA
1 AAATTTAAAAA
923160 GTTATAATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
26 4 0.11
27 23 0.66
28 8 0.23
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
AAATTTAAAAAAAAATAAATTATTTT
Found at i:923173 original size:26 final size:28
Alignment explanation
Indices: 923094--923174 Score: 73
Period size: 28 Copynumber: 3.0 Consensus size: 28
923084 ACTCCACGTC
* * *
923094 AAATTCTAAAAAAA-AATAATATTATTT
1 AAATTTTAAAAAAATTATAATATTTTTT
923121 AAATTTTAAAAAAAATTA-AAT-TATTTTT
1 AAATTTT-AAAAAAATTATAATAT-TTTTT
*
923149 AAA-TTT-AAAAAGTTATAATATTTTTT
1 AAATTTTAAAAAAATTATAATATTTTTT
923175 TCTTAATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
25 8 0.18
26 8 0.18
27 11 0.24
28 17 0.38
29 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (28 bp):
AAATTTTAAAAAAATTATAATATTTTTT
Found at i:923225 original size:23 final size:22
Alignment explanation
Indices: 923199--923245 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
923189 TTATATAGGC
*
923199 ATAAATTAAAAAAATTAAATAAA
1 ATAAATAAAAAAAATTAAA-AAA
*
923222 ATAACTAAAAAAAATTAAAAAA
1 ATAAATAAAAAAAATTAAAAAA
923244 AT
1 AT
923246 TAAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (22 bp):
ATAAATAAAAAAAATTAAAAAA
Found at i:923253 original size:8 final size:9
Alignment explanation
Indices: 923201--923252 Score: 59
Period size: 9 Copynumber: 5.2 Consensus size: 9
923191 ATATAGGCAT
923201 AAATTAAAA
1 AAATTAAAA
923210 AAATTAAATA
1 AAATTAAA-A
923220 AAATAACTAAAAA
1 AAAT---T-AAAA
923233 AAATTAAAA
1 AAATTAAAA
923242 AAATTAAAA
1 AAATTAAAA
923251 AA
1 AA
923253 TAAATGATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
9 23 0.61
10 6 0.16
13 6 0.16
14 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (9 bp):
AAATTAAAA
Found at i:930036 original size:50 final size:49
Alignment explanation
Indices: 929976--930070 Score: 111
Period size: 50 Copynumber: 1.9 Consensus size: 49
929966 TTCAATTAAC
* *
929976 ATAGCTTACAA-TAAAATATTTGACACTCGTCTTTTTAAGTTTGGGTGATA
1 ATAGCCTACAACT-AAATATTTGACACTCGTC-TTTTAAGTTCGGGTGATA
** * *
930026 ATAGCCTACAACTGTATATTTGATACTTGTCTTTTAAGTTCGGGT
1 ATAGCCTACAACTAAATATTTGACACTCGTCTTTTAAGTTCGGGT
930071 ACCATAGCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
49 13 0.34
50 24 0.63
51 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (49 bp):
ATAGCCTACAACTAAATATTTGACACTCGTCTTTTAAGTTCGGGTGATA
Found at i:930365 original size:1 final size:1
Alignment explanation
Indices: 930359--930389 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
930349 GATGCGAGCC
930359 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
930390 CTTAAGGACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:932046 original size:4 final size:4
Alignment explanation
Indices: 932037--932065 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
932027 ACATAACAAC
932037 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
932066 AGAAAACCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:934240 original size:17 final size:17
Alignment explanation
Indices: 934218--934251 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
934208 GAAGTAGAAA
*
934218 AGAAAATTCTTAGCTTT
1 AGAAAAATCTTAGCTTT
*
934235 AGAAAAATCTTTGCTTT
1 AGAAAAATCTTAGCTTT
934252 GTTACTCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (17 bp):
AGAAAAATCTTAGCTTT
Found at i:943218 original size:4 final size:4
Alignment explanation
Indices: 943202--943236 Score: 52
Period size: 4 Copynumber: 8.8 Consensus size: 4
943192 AAAAGTATTC
* *
943202 TTAT TTGT TTAT TTAT TTAT TTAT TTAG TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
943237 GTGTTATGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (4 bp):
TTAT
Found at i:944063 original size:3 final size:3
Alignment explanation
Indices: 944055--944081 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
944045 ATTATTGTTC
944055 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
944082 TTTGATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:944486 original size:3 final size:3
Alignment explanation
Indices: 944478--944514 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
944468 TATCTTGCTA
944478 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
944515 GACTCATCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Done.