genome.fa.s2605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2605
Parameters: 2 7 7 80 10 50 1000
Length:  84278

Tables:   1   

This is table  1  of  1  ( 92 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4776--4860	39	2.2	38	79	6	98	27	21	21	30	1.98
7573--7744	81	2.2	77	91	5	272	29	5	23	41	1.76
8001--8077	10	7.3	10	73	13	57	59	1	1	37	1.14
8043--8090	20	2.3	20	89	7	69	68	0	0	31	0.90
8043--8110	22	3.2	22	81	8	70	67	0	0	32	0.91
8580--8848	132	2.0	134	87	4	384	41	2	5	50	1.41
9754--9804	23	2.2	24	85	3	68	43	1	3	50	1.31
10081--10111	3	10.0	3	93	6	53	64	0	3	32	1.09
12544--12571	2	14.0	2	100	0	56	50	0	0	50	1.00
13640--13673	2	18.0	2	88	11	54	47	0	0	52	1.00
13640--13673	15	2.3	15	100	0	68	47	0	0	52	1.00
13647--13672	13	2.0	13	100	0	52	46	0	0	53	1.00
14027--14083	29	2.0	29	96	0	105	28	8	7	56	1.56
15025--15104	37	2.2	36	80	12	85	53	1	0	45	1.08
15344--15479	36	3.6	36	72	19	125	36	4	3	55	1.38
15282--15900	274	2.2	280	88	3	908	36	10	7	45	1.67
19274--19428	78	2.0	78	100	0	310	50	6	9	34	1.60
19637--20400	92	8.4	92	81	5	826	33	16	8	41	1.78
19637--20400	185	4.2	182	81	6	847	33	16	8	41	1.78
20908--21250	125	2.8	123	85	6	419	55	1	2	40	1.24
21221--21250	15	2.0	15	93	0	51	63	0	0	36	0.95
21536--21637	46	2.2	46	81	10	118	33	0	5	59	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21629--21759	33	4.0	32	70	16	108	47	1	1	49	1.20
21615--21749	33	4.1	32	68	15	96	45	2	1	50	1.23
21770--21901	67	2.0	64	84	10	167	43	0	0	56	1.04
22484--22525	9	4.7	9	77	11	50	73	0	0	26	0.83
23375--23443	31	2.2	30	80	12	77	42	2	0	55	1.15
26767--26800	17	1.9	17	94	5	59	67	0	0	32	0.91
28011--28092	14	6.0	13	73	9	58	46	3	2	47	1.33
28938--28970	2	16.5	2	93	0	57	48	0	3	48	1.17
29048--29086	2	19.5	2	89	0	60	46	0	5	48	1.24
28917--29253	116	3.0	113	90	5	526	37	10	8	42	1.71
29164--29193	8	3.8	8	90	0	51	43	0	6	50	1.28
29164--29196	16	2.1	16	100	0	66	45	0	6	48	1.27
29339--29401	29	2.1	31	85	8	85	36	0	1	61	1.05
29389--29426	16	2.4	16	86	8	51	39	0	0	60	0.97
29420--29480	5	12.4	5	74	22	58	44	0	1	54	1.10
29420--29504	20	4.1	20	71	24	68	42	0	3	54	1.17
29415--29475	8	6.6	9	77	18	63	44	0	1	54	1.10
29424--29490	15	4.5	15	80	16	77	44	0	1	53	1.09
29415--29475	28	2.2	28	96	0	113	44	0	1	54	1.10
29758--29807	23	2.3	22	82	6	57	42	6	4	48	1.46
29890--29926	19	1.9	19	89	10	58	70	0	0	29	0.88
31334--31361	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34050--34103	27	2.0	27	100	0	108	22	3	22	51	1.63
35245--35434	94	2.0	94	93	1	328	38	15	11	35	1.83
35507--35553	5	9.4	5	86	9	69	82	0	17	0	0.66
35504--35562	20	2.8	21	82	7	66	79	0	20	0	0.73
35510--35555	21	2.2	21	92	3	76	82	0	17	0	0.67
35837--35869	11	3.0	11	87	12	50	30	0	0	69	0.88
38224--38280	17	3.5	17	88	9	84	5	15	1	77	1.03
38232--38280	15	3.1	16	88	5	73	6	16	0	77	0.96
38244--38301	25	2.3	25	82	11	66	5	20	0	74	1.01
39302--39495	105	1.9	104	85	3	273	46	12	9	31	1.74
39846--39876	15	2.1	15	93	0	53	9	6	38	45	1.63
39889--39966	16	4.8	16	80	1	75	10	12	29	47	1.75
40790--40856	16	4.2	16	82	3	82	10	13	34	41	1.79
42203--42264	21	3.0	21	100	0	124	33	19	27	19	1.96
45532--45661	53	2.5	52	88	2	206	28	18	16	36	1.93
45739--45809	32	2.2	32	92	5	117	36	18	14	30	1.90
52139--52168	11	2.6	12	89	10	53	50	10	10	30	1.69
54412--54483	28	2.6	28	86	0	90	25	19	33	22	1.97
54472--54604	53	2.5	52	78	6	142	33	12	25	28	1.92
54473--54642	52	3.2	52	79	7	157	31	13	25	28	1.94
54625--54697	27	2.6	28	86	2	94	23	21	32	21	1.98
54407--54811	213	1.9	212	88	3	618	31	13	26	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57147--57211	33	2.0	33	87	0	94	43	13	15	27	1.85
57233--57300	19	3.9	18	76	23	83	38	14	11	35	1.83
57255--57279	13	1.9	13	100	0	50	32	16	16	36	1.90
57236--57298	32	2.0	32	96	0	117	36	15	12	34	1.86
57336--57391	21	2.7	21	94	0	94	35	19	12	32	1.89
58132--58432	55	5.5	54	89	5	426	21	20	28	28	1.98
58296--58385	26	3.3	26	70	19	85	22	17	31	28	1.97
59416--59466	13	3.6	14	84	7	68	0	5	11	82	0.83
59415--59464	14	3.6	14	86	8	66	0	8	10	82	0.86
71938--72009	28	2.6	28	86	0	90	25	19	33	22	1.97
71999--72166	52	3.2	51	75	12	128	31	12	25	30	1.93
72147--72222	27	2.8	28	82	15	88	25	23	28	22	1.99
71933--72336	212	1.9	212	88	4	609	31	13	26	28	1.94
74671--74735	33	2.0	33	87	0	94	43	13	15	27	1.85
74757--74824	19	3.9	18	76	23	83	38	14	11	35	1.83
74779--74803	13	1.9	13	100	0	50	32	16	16	36	1.90
74760--74822	32	2.0	32	96	0	117	36	15	12	34	1.86
76105--76139	7	5.0	7	92	0	61	28	2	14	54	1.54
76108--76152	14	3.3	14	84	3	56	33	4	11	51	1.58
76896--76929	7	4.9	7	85	0	50	35	17	32	14	1.91
76896--76929	14	2.4	14	95	0	59	35	17	32	14	1.91
77321--77350	15	2.0	15	100	0	60	0	6	53	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78335--78384	24	2.1	24	85	7	66	4	18	2	76	1.04
78762--78810	2	24.5	2	91	0	80	2	44	2	51	1.24
80119--80150	16	2.0	16	93	0	55	62	0	3	34	1.11
80729--80774	22	2.0	23	83	8	58	43	0	0	56	0.99

Tables:   1

The End!