Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2606
Parameters: 2 7 7 80 10 50 1000
Length:  36339

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1020--1054
17
2.0
18
88
5
54
0
14
2
82
0.77
1523--1558
18
2.0
18
94
0
63
30
38
2
27
1.71
4144--4178
2
17.5
2
100
0
70
48
0
0
51
1.00
4718--4744
12
2.2
12
100
0
54
25
37
14
22
1.93
5603--5645
21
2.0
21
95
0
77
30
18
6
44
1.76
5670--5732
19
3.7
17
76
24
62
36
15
12
34
1.86
5664--5734
32
2.2
32
94
0
124
36
15
11
36
1.83
5689--5713
13
1.9
13
100
0
50
32
16
16
36
1.90
5701--5762
19
3.2
19
73
13
63
27
16
14
41
1.87
5795--5864
21
3.3
21
95
0
131
38
17
10
34
1.83
15348--15395
17
2.9
16
84
9
60
81
10
4
4
0.97
15351--15404
16
3.3
16
85
10
65
81
12
1
3
0.91
16825--16914
29
3.1
30
79
9
123
30
28
15
25
1.96
16887--16968
32
2.5
32
82
2
92
19
30
15
34
1.93
17063--17132
30
2.4
29
90
4
106
35
31
17
15
1.91
17144--17408
43
5.7
44
80
10
257
24
26
17
30
1.97
17144--17617
49
9.9
46
73
11
289
24
26
17
31
1.97
17144--17572
101
4.5
92
79
9
414
24
27
17
31
1.97
18387--18411
13
1.9
13
100
0
50
36
16
16
32
1.90
18483--18507
13
1.9
13
100
0
50
32
16
16
36
1.90
18516--18644
52
2.5
52
92
0
213
37
17
16
27
1.91
25766--26716
486
2.0
486
99
0
1866
24
19
19
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27610--27674
33
2.0
33
90
0
103
35
13
15
35
1.87
28140--28236
31
3.0
32
72
10
90
41
14
20
23
1.89
31094--31131
14
2.8
14
81
18
53
60
0
7
31
1.25

Tables:   1

The End!