Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold261
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 193966
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
File 1 of 2
Found at i:1054 original size:25 final size:25
Alignment explanation
Indices: 992--1057 Score: 84
Period size: 24 Copynumber: 2.7 Consensus size: 25
982 TAAAAATATT
992 AAAAATATAT-TAAAAATTAATTTAA
1 AAAAATATATATAAAAATT-ATTTAA
*
1017 AAAAAT-TAAATAAGAAATT-TTTAA
1 AAAAATATATATAA-AAATTATTTAA
1041 AAAAATATATATAAAAA
1 AAAAATATATATAAAAA
1058 AGATCAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
24 16 0.44
25 15 0.42
26 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (25 bp):
AAAAATATATATAAAAATTATTTAA
Found at i:1198 original size:94 final size:94
Alignment explanation
Indices: 1107--1295 Score: 272
Period size: 94 Copynumber: 2.0 Consensus size: 94
1097 ATTGATATTG
**
1107 ATTAATACAAGTTAATAT-AAAATTAAAATAATACATTATTAATATTACTTTATTTTATCTAAAA
1 ATTAATACAAACTAATATAAAAATTAAAATAATACATTATTAATATTACTTTATTTTATCTAAAA
*
1171 ATTGATACATATTAATTTATATCGATATA
66 ATTAATACATATTAATTTATATCGATATA
* * * *
1200 ATTTATATAAACTAATATAAAAATTAAAATAATACATTATTAATATTATTTTATTTTATTTAAAA
1 ATTAATACAAACTAATATAAAAATTAAAATAATACATTATTAATATTACTTTATTTTATCTAAAA
** *
1265 ATTAATGTATATTAATTTATATTTGATATA
66 ATTAATACATATTAATTTATA-TCGATATA
1295 A
1 A
1296 ATAACTATGA
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
93 14 0.17
94 62 0.74
95 8 0.10
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.46
Consensus pattern (94 bp):
ATTAATACAAACTAATATAAAAATTAAAATAATACATTATTAATATTACTTTATTTTATCTAAAA
ATTAATACATATTAATTTATATCGATATA
Found at i:2939 original size:28 final size:28
Alignment explanation
Indices: 2908--2967 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
2898 AAATACTTGG
*
2908 TTTTGGTTACTTATTATAATATCTACAT
1 TTTTGATTACTTATTATAATATCTACAT
* *
2936 TTTTTATTACTTATTATAATATTTACAT
1 TTTTGATTACTTATTATAATATCTACAT
2964 TTTT
1 TTTT
2968 AGGGAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.60
Consensus pattern (28 bp):
TTTTGATTACTTATTATAATATCTACAT
Found at i:3137 original size:17 final size:16
Alignment explanation
Indices: 3117--3168 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
3107 ACTAGCTTTC
*
3117 AAAAAAGCTTTTATTCT
1 AAAAAAGCTCTTATT-T
3134 AAAACAA-CTCTTATTT
1 AAAA-AAGCTCTTATTT
* *
3150 AAAATAGCTCTTGTTT
1 AAAAAAGCTCTTATTT
3166 AAA
1 AAA
3169 GCCATTTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 1 0.03
16 16 0.53
17 11 0.37
18 2 0.07
ACGTcount: A:0.42, C:0.13, G:0.06, T:0.38
Consensus pattern (16 bp):
AAAAAAGCTCTTATTT
Found at i:7905 original size:19 final size:19
Alignment explanation
Indices: 7881--7924 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
7871 ACTGCTGCTA
7881 CTGGAGTTGCTCCTGGTTG
1 CTGGAGTTGCTCCTGGTTG
7900 CTGGAGTTGCTCCTGGTTG
1 CTGGAGTTGCTCCTGGTTG
7919 CTGGAG
1 CTGGAG
7925 GCTGCTGTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.07, C:0.20, G:0.39, T:0.34
Consensus pattern (19 bp):
CTGGAGTTGCTCCTGGTTG
Found at i:7966 original size:19 final size:18
Alignment explanation
Indices: 7928--7968 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
7918 GCTGGAGGCT
7928 GCTGTGGGAGTTGCTCGA
1 GCTGTGGGAGTTGCTCGA
7946 GCTGTTGGGTAGTTGCT-GA
1 GCTG-TGGG-AGTTGCTCGA
7965 GCTG
1 GCTG
7969 CTGGCCTGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.19
19 10 0.48
20 7 0.33
ACGTcount: A:0.10, C:0.15, G:0.44, T:0.32
Consensus pattern (18 bp):
GCTGTGGGAGTTGCTCGA
Found at i:9364 original size:43 final size:43
Alignment explanation
Indices: 9302--9395 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
9292 AGAAGGGTGA
* * *
9302 TAAAGATGTCAATATGCTGATTCAAGGCCAACGATATTGGCCT
1 TAAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACT
* * *
9345 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATACTGGACT
1 TAAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACT
9388 TAAAGATG
1 TAAAGATG
9396 ACAAAGGCGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (43 bp):
TAAAGATGCCAATATGCTGATTCAAGGCCAACGATACTGGACT
Found at i:9424 original size:52 final size:51
Alignment explanation
Indices: 9346--9946 Score: 369
Period size: 52 Copynumber: 11.9 Consensus size: 51
9336 TATTGGCCTT
* *
9346 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATACTGGACTTAAAGATGAC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG-C
* *** * * * *
9398 AAAGGCGCCAATATGCTGATTCAAGGCCAATAATGTTGGGCTTAAAGGTGG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
* * * * * * ** *
9449 AAAGAATGTCAATGTGCTGATTCAGGGCCAGCGACATTGGGCTTAGGGATGTT
1 AAAG-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG-C
* * * * * ***
9502 AAAGATACCAATATGTTGATTTAAAGCCAGCGATATCAAACTTAAAGATG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
* * *
9552 -AAGGTGCCAATAT-ATCGATTCAAGGCCAACGACATTGGACTTAAAGATG-
1 AAAGGTGCCAATATGCT-GATTCAAGGCCAGCGATATTGGACTTAAAGATGC
* * * * * * *
9601 -GAGGTACCGATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
* * * * * * **
9650 -GAGGTACCGATGTGCTAATTCAAGGCTAGCGACGTTGGACTTAAATG-TGGC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-GAT-GC
* * * *
9701 AAAAGTGCCAATATGCTAATTTAAGGCCAGTGATA-TGAGAC-T-----T--
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTG-GACTTAAAGATGC
*
9744 AAAGGTGCCAA-AGTGCTGATTCAAGGCCAACGATATTAGG-CTTAAAGATGAC
1 AAAGGTGCCAATA-TGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGATG-C
* * * * *
9796 AAAAGGTGCCAATGTGTTGATTCAAGGCCAGCGACACTAGACTTAAAGATGGC
1 -AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-GC
* * *
9849 AAAGGTGCCAATATGCTTATTCAAGGCCAGTGATATTGGATTTAAA-AGTGCC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA-TG-C
* * * * *
9901 AAACGTGTCAATATGCTGACTCAAGGCCAGCAATATTGGATTTAAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
9947 AGTACCAATG
Statistics
Matches: 430, Mismatches: 92, Indels: 54
0.75 0.16 0.09
Matches are distributed among these distances:
42 1 0.00
43 29 0.07
44 3 0.01
45 1 0.00
46 1 0.00
48 1 0.00
49 122 0.28
50 3 0.01
51 9 0.02
52 214 0.50
53 45 0.10
54 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (51 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
Found at i:9596 original size:49 final size:49
Alignment explanation
Indices: 9541--9729 Score: 175
Period size: 49 Copynumber: 3.8 Consensus size: 49
9531 GCGATATCAA
* * * *
9541 ACTTAAAGATGAAGGTGCCAATAT-ATCGATTCAAGGCCAACGACATTGG
1 ACTTAAAGATGGAGGTACCAATATGCT-AATTCAAGGCCAACGACATTGG
* * * *
9590 ACTTAAAGATGGAGGTACCGATGTGCTAATTCAAGGCTAGCGACATTGG
1 ACTTAAAGATGGAGGTACCAATATGCTAATTCAAGGCCAACGACATTGG
* * * * *
9639 ACTTAAAGATGGAGGTACCGATGTGCTAATTCAAGGCTAGCGACGTTGG
1 ACTTAAAGATGGAGGTACCAATATGCTAATTCAAGGCCAACGACATTGG
* * *
9688 ACTTAAATG-TGGCAAAAGTGCCAATATGCTAATTTAAGGCCA
1 ACTTAAA-GATGG---AGGTACCAATATGCTAATTCAAGGCCA
9730 GTGATATGAG
Statistics
Matches: 120, Mismatches: 15, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
49 97 0.81
50 2 0.02
52 21 0.17
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.24
Consensus pattern (49 bp):
ACTTAAAGATGGAGGTACCAATATGCTAATTCAAGGCCAACGACATTGG
Found at i:9770 original size:43 final size:43
Alignment explanation
Indices: 9705--9790 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
9695 TGTGGCAAAA
* **
9705 GTGCCAATATGCTAATTTAAGGCCAGTGATATGAGACTTAAAG
1 GTGCCAATATGCTAATTCAAGGCCAACGATATGAGACTTAAAG
* * *
9748 GTGCCAA-AGTGCTGATTCAAGGCCAACGATATTAGGCTTAAAG
1 GTGCCAATA-TGCTAATTCAAGGCCAACGATATGAGACTTAAAG
9791 ATGACAAAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (43 bp):
GTGCCAATATGCTAATTCAAGGCCAACGATATGAGACTTAAAG
Found at i:9805 original size:53 final size:52
Alignment explanation
Indices: 9744--9877 Score: 171
Period size: 53 Copynumber: 2.6 Consensus size: 52
9734 TATGAGACTT
* * *
9744 AAAGGTGCCAAAGTGCTGATTCAAGGCCAACGATATTAGGCTTAAAGATGAC
1 AAAGGTGCCAAAGTGCTGATTCAAGGCCAACGACACTAGACTTAAAGATGAC
* * * *
9796 AAAAGGTGCCAATGTGTTGATTCAAGGCCAGCGACACTAGACTTAAAGATGGC
1 -AAAGGTGCCAAAGTGCTGATTCAAGGCCAACGACACTAGACTTAAAGATGAC
*
9849 AAAGGTGCCAATA-TGCTTATTCAAGGCCA
1 AAAGGTGCCAA-AGTGCTGATTCAAGGCCA
9878 GTGATATTGG
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
52 25 0.36
53 45 0.64
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (52 bp):
AAAGGTGCCAAAGTGCTGATTCAAGGCCAACGACACTAGACTTAAAGATGAC
Found at i:9962 original size:200 final size:192
Alignment explanation
Indices: 9568--9987 Score: 446
Period size: 200 Copynumber: 2.1 Consensus size: 192
9558 CCAATATATC
* * *
9568 GATTCAAGGCCAACGACATTGGACTTAAAGATGGAGGTACCGATGTGCTAATTCAAGGCTAGCGA
1 GATTCAAGGCCAACGACATTGG-CTTAAAGATGAAGGTACCAATGTGCTAATTCAAGGCCAGCGA
* * * * * * *
9633 CATTGGACTTAAAGATGGAGGTACCGATGTGCTAATTCAAGGCTAGCGACGTTGGACTTAAATGT
65 CACTAGACTTAAAGATGGAGGTACCAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAAGT
* * * ** * *
9698 GGCAAAAGTGCCAATATGCTAATTTAAGGCCAGTGATATGAGACTTAAAGGTGCCAAAGTGCT
130 GCCAAAAGTGCCAATATGCTAACTCAAGGCCAGCAATATGAGACTTAAAAGTACCAAAGTGCT
* * * *
9761 GATTCAAGGCCAACGATATTAGGCTTAAAGATGACAAAAGGTGCCAATGTGTTGATTCAAGGCCA
1 GATTCAAGGCCAACGACATT-GGCTTAAAGATG----AAGGTACCAATGTGCTAATTCAAGGCCA
* * * * *
9826 GCGACACTAGACTTAAAGATGGCAAAGGTGCCAATATGCTTATTCAAGGCCAGTGATATTGGATT
61 GCGACACTAGACTTAAAGATGG---AGGTACCAATATGCTAATTCAAGGCCAGCGACATTGGACT
* * * *
9891 TAAAAGTGCCAAACGTGTCAATATGCTGACTCAAGGCCAGCAATATTG-GATTTAAAAGTACCAA
123 TAAAAGTGCCAAAAGTGCCAATATGCTAACTCAAGGCCAGCAATA-TGAGACTTAAAAGTACCAA
*
9955 TGTGCT
187 AGTGCT
*
9961 GATTCAAGGCCAGCGACATTGGGCTTA
1 GATTCAAGGCCAACGACATT-GGCTTA
9988 GAAGGAAATA
Statistics
Matches: 184, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
193 29 0.16
194 2 0.01
197 42 0.23
200 109 0.59
201 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (192 bp):
GATTCAAGGCCAACGACATTGGCTTAAAGATGAAGGTACCAATGTGCTAATTCAAGGCCAGCGAC
ACTAGACTTAAAGATGGAGGTACCAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAAGTG
CCAAAAGTGCCAATATGCTAACTCAAGGCCAGCAATATGAGACTTAAAAGTACCAAAGTGCT
Found at i:10034 original size:32 final size:32
Alignment explanation
Indices: 9998--10381 Score: 321
Period size: 32 Copynumber: 12.0 Consensus size: 32
9988 GAAGGAAATA
*
9998 CCACCAACTTGTGTGGGTTTTTGAAAAGGTTG
1 CCACCAACTTGTGTGGGCTTTTGAAAAGGTTG
* * **
10030 CCACCGATTTGTGTGGGCTTTAAAAAAGGTTG
1 CCACCAACTTGTGTGGGCTTTTGAAAAGGTTG
* * * *
10062 CCACCAACTTCTATGGGCTTTAGAAAGGGTTG
1 CCACCAACTTGTGTGGGCTTTTGAAAAGGTTG
* ** * *
10094 CCGCCAACTTACGTGGGATTTAG-AAAGAGTTG
1 CCACCAACTTGTGTGGGCTTTTGAAAAG-GTTG
* *
10126 CC-CCAACTTGTGTGGGCTTTTGAAGATGTTG
1 CCACCAACTTGTGTGGGCTTTTGAAAAGGTTG
* * *
10157 TCGCCAACTTGTGTGGGC-TTTAAAAAGGGGTTG
1 CCACCAACTTGTGTGGGCTTTTGAAAA--GGTTG
* * *
10190 TCACCAACTTGTGTGGGCTTTTAAAGAAGGTTA
1 CCACCAACTTGTGTGGGCTTTTGAA-AAGGTTG
* * * *
10223 CCACCAACTTGTATGGGCTTTAGAAAGGGTCG
1 CCACCAACTTGTGTGGGCTTTTGAAAAGGTTG
* *
10255 CCACCAACTTGTGTGGGC-TTTGAGAAGGGGTG
1 CCACCAACTTGTGTGGGCTTTTGA-AAAGGTTG
** * *
10287 CCACCAGTTTGTGTAGGC-TTT-AAAGGGGTTG
1 CCACCAACTTGTGTGGGCTTTTGAAA-AGGTTG
* *
10318 CCATCGACTTGTGTGGGCTTTTGAAGAAGGTTG
1 CCACCAACTTGTGTGGGCTTTTGAA-AAGGTTG
* * * *
10351 CCACCAGCTTATGTGGGCTTTAGAGAAGGTT
1 CCACCAACTTGTGTGGGCTTTTGAAAAGGTT
10382 TCTCCACTGG
Statistics
Matches: 284, Mismatches: 56, Indels: 24
0.78 0.15 0.07
Matches are distributed among these distances:
30 2 0.01
31 53 0.19
32 148 0.52
33 72 0.25
34 7 0.02
35 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (32 bp):
CCACCAACTTGTGTGGGCTTTTGAAAAGGTTG
Found at i:10330 original size:161 final size:158
Alignment explanation
Indices: 9998--10381 Score: 421
Period size: 161 Copynumber: 2.4 Consensus size: 158
9988 GAAGGAAATA
* * * * * *
9998 CCACCAACTTGTGTGGGTTTTTGAAAAGGTTGCCACCGATTTGTGTGGGCTTTAAAAAAGGTTGC
1 CCACCAACTTGTGTGGG-CTTTAAAAAGGTTGCCACCAACTTGTGTGGGCTTTAAAGAAGGTTAC
* * *
10063 CACCAACTTCTATGGGCTTTAGAAAGGGTTGCCGCCAACTTACGTGGGATTTAGAAAGAGTTGCC
65 CACCAACTTCTATGGGCTTTAGAAAGGGTCGCCACCAACTTACGTGGGATTTAGAAAGAGGTGCC
* * *
10128 CCAACTTGTGTGGGCTTTTGAAGATGTTG
130 CCAACTTGTGTAGGCTTTTAAAGAGGTTG
* * *
10157 TCGCCAACTTGTGTGGGCTTTAAAAAGGGGTTGTCACCAACTTGTGTGGGCTTTTAAAGAAGGTT
1 CCACCAACTTGTGTGGGCTTTAAAAA--GGTTGCCACCAACTTGTGTGGGC-TTTAAAGAAGGTT
* ** * *
10222 ACCACCAACTTGTATGGGCTTTAGAAAGGGTCGCCACCAACTTGTGTGGGCTTT-GAGAAGGGGT
63 ACCACCAACTTCTATGGGCTTTAGAAAGGGTCGCCACCAACTTACGTGGGATTTAGA-AAGAGGT
** *
10286 GCCACCAGTTTGTGTAGGC-TTTAAAGGGGTTG
127 GCC-CCAACTTGTGTAGGCTTTTAAAGAGGTTG
* * * * * *
10318 CCATCGACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCAGCTTATGTGGGCTTTAGAGAAGGTT
1 CCACCAACTTGTGTGGGC-TTT-AAAAAGGTTGCCACCAACTTGTGTGGGCTTTAAAGAAGGTT
10382 TCTCCACTGG
Statistics
Matches: 186, Mismatches: 32, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
158 7 0.04
159 15 0.08
160 34 0.18
161 111 0.60
162 15 0.08
163 4 0.02
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (158 bp):
CCACCAACTTGTGTGGGCTTTAAAAAGGTTGCCACCAACTTGTGTGGGCTTTAAAGAAGGTTACC
ACCAACTTCTATGGGCTTTAGAAAGGGTCGCCACCAACTTACGTGGGATTTAGAAAGAGGTGCCC
CAACTTGTGTAGGCTTTTAAAGAGGTTG
Found at i:10347 original size:128 final size:129
Alignment explanation
Indices: 9998--10379 Score: 416
Period size: 128 Copynumber: 3.0 Consensus size: 129
9988 GAAGGAAATA
* * **
9998 CCACCAACTTGTGTGGGTTTTTGA-AAAGGTTGCCACC-GATTTGTGTGGGCTTTAAAAAAGGTT
1 CCACCAACTTGTGTGGG-CTTTGAGAAGGGTTGCCACCAG-TTTGTGTGGGCTTTAAAAGGGGTT
* * * * * * * * *
10061 GCCACCAACTTCTATGGGCTTTAGAA-AGGGTTGCCGCCAACTTACGTGGGATTTAGAAAGAGTT
64 GCCACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCAACTTATGTGGGCTTTAGAAAGGGTC
10125 G
129 G
* * * * **
10126 CC-CCAACTTGTGTGGGCTTT-TGAAGATGTTGTCGCCAACTTGTGTGGGCTTTAAAAAGGGGTT
1 CCACCAACTTGTGTGGGCTTTGAGAAG-GGTTGCCACCAGTTTGTGTGGGCTTT-AAAAGGGGTT
* * * * *
10189 GTCACCAACTTGTGTGGGCTTTTAAAGAAGGTTACCACCAACTTGTATGGGCTTTAGAAAGGGTC
64 GCCACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCAACTTATGTGGGCTTTAGAAAGGGTC
10254 G
129 G
* *
10255 CCACCAACTTGTGTGGGCTTTGAGAAGGGGTGCCACCAGTTTGTGTAGGCTTT-AAAGGGGTTGC
1 CCACCAACTTGTGTGGGCTTTGAGAAGGGTTGCCACCAGTTTGTGTGGGCTTTAAAAGGGGTTGC
* * *
10319 CATCGACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCAGCTTATGTGGGCTTTAGAGAAGG
66 CACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCAACTTATGTGGGCTTTAGA-AAGG
10380 TTTCTCCACT
Statistics
Matches: 206, Mismatches: 40, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
126 5 0.02
127 34 0.17
128 90 0.44
129 36 0.17
130 37 0.18
131 4 0.02
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (129 bp):
CCACCAACTTGTGTGGGCTTTGAGAAGGGTTGCCACCAGTTTGTGTGGGCTTTAAAAGGGGTTGC
CACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCAACTTATGTGGGCTTTAGAAAGGGTCG
Found at i:10538 original size:27 final size:27
Alignment explanation
Indices: 10507--10561 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
10497 CTTTAGAAGG
*
10507 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACAGAGTTGTGGACTTAAAA
10534 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACAGAGTTGTGGACTTAAAA
10561 G
1 G
10562 AAAAAGACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.36, T:0.22
Consensus pattern (27 bp):
GGGTGCCACAGAGTTGTGGACTTAAAA
Found at i:10575 original size:32 final size:32
Alignment explanation
Indices: 10510--10929 Score: 256
Period size: 33 Copynumber: 13.1 Consensus size: 32
10500 TAGAAGGGGG
*
10510 TGCCACGGAGTTGTGGACTTAAAAG-----GG
1 TGCCACGGAGTTGTGGACTTAAAAGAAAAAGA
*
10537 TGCCACAGAGTTGTGGACTTAAAAGAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGAAAAAGA
** ** *
10569 CACCACAAAGTTGTGGACTTTGAAAAAAAAAAG-
1 TGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGA
* ** *
10602 TGTCACGGAGTTGTGGACTTTGAAGGAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGAAAAAGA
* *
10634 TGCCACGGAGTTGTGGGTCTTGAAAAGAAAAAGG
1 TGCCACGGAGTTGT-GGACTT-AAAAGAAAAAGA
*
10668 TGCCATGGAGTTGTGGACTTAAAAGGAAAAA-A
1 TGCCACGGAGTTGTGGACTTAAAA-GAAAAAGA
* * * *
10700 TGCTACAGAGTTGTACG-CTTTAAAAAGAAAAAGG
1 TGCCACGGAGTTGT-GGAC-TT-AAAAGAAAAAGA
* *
10734 TGCCACGGAGTTGTGGACTTAAAAGGAATAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-GAAAAAGA
* * * **
10767 TGCCATGGAGTTGTGGACTTTGAAGGAAATGGA
1 TGCCACGGAGTTGTGGAC-TTAAAAGAAAAAGA
* **
10800 TGCCACTGAGTCATGGACTT---AGAAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGAAAAA-GA
* * **
10830 TGCCACTGAGTAGTGGACTTTTAAGAAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGAAAAA-GA
* * *
10863 TGCCACTGAGTCGTGGAATT---AGAAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGAAAAA-GA
** * **
10893 TGCCACTAAGTCGTGGACTTTGAAGAAAAATGA
1 TGCCACGGAGTTGTGGACTTAAAAGAAAAA-GA
10926 TGCC
1 TGCC
10930 GCTAAGTCGT
Statistics
Matches: 314, Mismatches: 54, Indels: 44
0.76 0.13 0.11
Matches are distributed among these distances:
27 24 0.08
29 4 0.01
30 48 0.15
31 7 0.02
32 53 0.17
33 126 0.40
34 52 0.17
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.22
Consensus pattern (32 bp):
TGCCACGGAGTTGTGGACTTAAAAGAAAAAGA
Found at i:10685 original size:66 final size:66
Alignment explanation
Indices: 10530--10879 Score: 293
Period size: 66 Copynumber: 5.4 Consensus size: 66
10520 TTGTGGACTT
* * * ** * *
10530 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAGACACCACAAAGTTGTGGACTTTGAAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGATGCCACAGAGTTGTGGGCTTTGAAAA
10595 -
66 G
* * ** *
10595 AAAAAAGTGTCACGGAGTTGTGGACTTTGAAGGAAAAGATGCCACGGAGTTGTGGG-TCTTGAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGATGCCACAGAGTTGTGGGCT-TTGAAA
10659 AG
65 AG
* * * ** *
10661 AAAAAGGTGCCATGGAGTTGTGGACTTAAAAGGAAAAAATGCTACAGAGTTGTACGCTTTAAAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGATGCCACAGAGTTGTGGGCTTTGAAAA
10726 G
66 G
* ** *
10727 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAATAAGGTGCCATGGAGTTGTGGACTTTG--A
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA-AAGATGCCACAGAGTTGTGGGCTTTGAAA
10790 AG
65 AG
* * * ** * * * * * *
10792 GAAATGGATGCCACTGAGTCATGGACTTAGAA--AAAGGATGCCACTGAGTAGTGGACTTT--TA
1 AAAAAGG-TGCCACGGAGTTGTGGACTTAAAAGGAAAAGATGCCACAGAGTTGTGGGCTTTGAAA
10853 AG
65 AG
* *
10855 AAAAAGGATGCCACTGAGTCGTGGA
1 AAAAAGG-TGCCACGGAGTTGTGGA
10880 ATTAGAAAAA
Statistics
Matches: 232, Mismatches: 47, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
63 45 0.19
64 3 0.01
65 59 0.25
66 107 0.46
67 18 0.08
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.22
Consensus pattern (66 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGATGCCACAGAGTTGTGGGCTTTGAAAA
G
Found at i:10793 original size:33 final size:33
Alignment explanation
Indices: 10530--11114 Score: 230
Period size: 33 Copynumber: 18.1 Consensus size: 33
10520 TTGTGGACTT
* * * *
10530 AAAAGGGTGCCACAGAGTTGTGGAC-TTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
*** ** **
10562 AAAAAGACACCACAAAGTTGTGGACTTTGAAAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
* *
10595 AAAAAAGTGTCACGGAGTTGTGGACTTTGAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
* * *
10628 -AAAAGATGCCACGGAGTTGTGG-GTCTTGAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACT-TTG-AAGG
* **
10661 AAAAAGGTGCCATGGAGTTGTGGACTTAAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
* * * * * *
10694 AAAAA-ATGCTACAGAGTTGTACG-CTTTAAAAAG
1 AAAAAGGTGCCACGGAGTTGT-GGACTTT-GAAGG
**
10727 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
* *
10760 AATAAGGTGCCATGGAGTTGTGGACTTTGAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
* * **
10793 -AAATGGATGCCACTGAGTCATGGAC-TT--A-G
1 AAAAAGG-TGCCACGGAGTTGTGGACTTTGAAGG
* * *
10822 AAAAAGGATGCCACTGAGTAGTGGACTTTTAA-G
1 AAAAAGG-TGCCACGGAGTTGTGGACTTTGAAGG
* * *
10855 AAAAAGGATGCCACTGAGTCGTGGA-ATT--A-G
1 AAAAAGG-TGCCACGGAGTTGTGGACTTTGAAGG
** *
10885 AAAAAGGATGCCACTAAGTCGTGGACTTTGAA-G
1 AAAAAGG-TGCCACGGAGTTGTGGACTTTGAAGG
* * ** * *
10918 AAAAATGATGCCGCTAAGTCGTGAAC-TT--A-G
1 AAAAA-GGTGCCACGGAGTTGTGGACTTTGAAGG
* ** *
10948 AAAAAGGATGCCACTGAGTCATGGACTTTTAA-G
1 AAAAAGG-TGCCACGGAGTTGTGGACTTTGAAGG
* ** ** * *
10981 AAAAATGATGCCATTGAGGCGTGAACTTTTAA-G
1 AAAAA-GGTGCCACGGAGTTGTGGACTTTGAAGG
* ** * *
11014 AAAAATGATGCCACTAAATAGTGGACTTTGAA-G
1 AAAAA-GGTGCCACGGAGTTGTGGACTTTGAAGG
* ** *
11047 AAAAAGGATGCCACTGAGTCATGGACTTTGGA-G
1 AAAAAGG-TGCCACGGAGTTGTGGACTTTGAAGG
* * * *
11080 -AAAAGGTGTCACTGAGTCGTGGACTTTAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
11112 AAA
1 AAA
11115 TATGTCACAG
Statistics
Matches: 440, Mismatches: 87, Indels: 51
0.76 0.15 0.09
Matches are distributed among these distances:
29 2 0.00
30 70 0.16
31 27 0.06
32 74 0.17
33 228 0.52
34 38 0.09
35 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.23
Consensus pattern (33 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTTGAAGG
Found at i:10850 original size:63 final size:63
Alignment explanation
Indices: 10774--11115 Score: 359
Period size: 63 Copynumber: 5.4 Consensus size: 63
10764 AGGTGCCATG
* * *
10774 GAGTTGTGGACTTTGAAGGAAATGGATGCCACTGAGTCATGGACTTAGAAAAAGGATGCCACT
1 GAGTAGTGGACTTTGAAGAAAATGGATGCCACTGAGTCGTGGACTTAGAAAAAGGATGCCACT
* * *
10837 GAGTAGTGGACTTTTAAGAAAAAGGATGCCACTGAGTCGTGGAATTAGAAAAAGGATGCCACT
1 GAGTAGTGGACTTTGAAGAAAATGGATGCCACTGAGTCGTGGACTTAGAAAAAGGATGCCACT
* * * * *
10900 AAGTCGTGGACTTTGAAGAAAAAT-GATGCCGCTAAGTCGTGAACTTAGAAAAAGGATGCCACT
1 GAGTAGTGGACTTTGAAG-AAAATGGATGCCACTGAGTCGTGGACTTAGAAAAAGGATGCCACT
* * * * *
10963 GAGTCA-TGGACTTTTAAGAAAAAT-GATGCCATTGAGGCGTGAACTTTTAAGAAAAATGATGCC
1 GAGT-AGTGGACTTTGAAG-AAAATGGATGCCACTGAGTCGTGGAC--TT-AGAAAAAGGATGCC
11026 ACT
61 ACT
* * * * * *
11029 AAATAGTGGACTTTGAAGAAAAAGGATGCCACTGAGTCATGGACTTTGGAGAAAAGG-TGTCACT
1 GAGTAGTGGACTTTGAAGAAAATGGATGCCACTGAGTCGTGGAC-TTAGA-AAAAGGATGCCACT
* * *
11093 GAGTCGTGGACTTTAAAGGAAAT
1 GAGTAGTGGACTTTGAAGAAAAT
11116 ATGTCACAGA
Statistics
Matches: 232, Mismatches: 39, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
63 143 0.62
64 29 0.12
65 15 0.06
66 45 0.19
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (63 bp):
GAGTAGTGGACTTTGAAGAAAATGGATGCCACTGAGTCGTGGACTTAGAAAAAGGATGCCACT
Found at i:10920 original size:96 final size:96
Alignment explanation
Indices: 10724--11108 Score: 369
Period size: 96 Copynumber: 4.0 Consensus size: 96
10714 ACGCTTTAAA
** * ** * **
10724 AAGAAAAAGG-TGCCACGGAGTTGTGGACTTAAAAGGAATAAGG-TGCCA-TGGAGTTGTGGACT
1 AAGAAAAAGGATGCCACTAAGTAGTGGACTTTTAA-GAAAAAGGATGCCACT-GAGTCATGGACT
*
10786 TT-GAAGGAAATGGATGCCACTGAGTCATGGAC-TT
64 TTAGAA--AAA-GGATGCCACTGAGTCGTGGACTTT
* * *
10820 -AGAAAAAGGATGCCACTGAGTAGTGGACTTTTAAGAAAAAGGATGCCACTGAGTCGTGGA-ATT
1 AAGAAAAAGGATGCCACTAAGTAGTGGACTTTTAAGAAAAAGGATGCCACTGAGTCATGGACTTT
*
10883 AGAAAAAGGATGCCACTAAGTCGTGGACTTT
66 AGAAAAAGGATGCCACTGAGTCGTGGACTTT
* * * *
10914 GAAGAAAAATGATGCCGCTAAGTCGTGAAC--TT-AGAAAAAGGATGCCACTGAGTCATGGACTT
1 -AAGAAAAAGGATGCCACTAAGTAGTGGACTTTTAAGAAAAAGGATGCCACTGAGTCATGGAC-T
* * * *
10976 TTAAGAAAAATGATGCCATTGAGGCGTGAACTTTT
64 TT-AGAAAAAGGATGCCACTGAGTCGTGGAC-TTT
* * *
11011 AAGAAAAATGATGCCACTAAATAGTGGACTTTGAAGAAAAAGGATGCCACTGAGTCATGGACTTT
1 AAGAAAAAGGATGCCACTAAGTAGTGGACTTTTAAGAAAAAGGATGCCACTGAGTCATGGACTTT
* *
11076 GGAGAAAAGG-TGTCACTGAGTCGTGGACTTT
66 AGA-AAAAGGATGCCACTGAGTCGTGGACTTT
11107 AA
1 AA
11109 AGGAAATATG
Statistics
Matches: 242, Mismatches: 32, Indels: 30
0.80 0.11 0.10
Matches are distributed among these distances:
93 45 0.19
94 7 0.03
95 20 0.08
96 113 0.47
97 20 0.08
98 9 0.04
99 28 0.12
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (96 bp):
AAGAAAAAGGATGCCACTAAGTAGTGGACTTTTAAGAAAAAGGATGCCACTGAGTCATGGACTTT
AGAAAAAGGATGCCACTGAGTCGTGGACTTT
Found at i:10928 original size:126 final size:127
Alignment explanation
Indices: 10779--11106 Score: 423
Period size: 126 Copynumber: 2.6 Consensus size: 127
10769 CCATGGAGTT
*
10779 GTGGACTTTGAAG-GAAATGGATGCCACTGAGTCATGGACTTAGAAAAAGGATGCCACTGAGTAG
1 GTGGACTTTGAAGAAAAAT-GATGCCACTGAGTCATGGACTTAGAAAAAGGATGCCACTGAGTAG
* * *
10843 TGGACTTTTAAGAAAAAGGATGCCACTGAGTCGTGGAA-TT-AGAAAAAGGATGCCACTAAGTC
65 TGGACTTTTAAGAAAAAGGATGCCACTGAGGCGT-GAATTTAAGAAAAAGGATGCCACTAAATA
* * * *
10905 GTGGACTTTGAAGAAAAATGATGCCGCTAAGTCGTGAACTTAGAAAAAGGATGCCACTGAGTCA-
1 GTGGACTTTGAAGAAAAATGATGCCACTGAGTCATGGACTTAGAAAAAGGATGCCACTGAGT-AG
* * *
10969 TGGACTTTTAAGAAAAATGATGCCATTGAGGCGTGAACTTTTAAGAAAAATGATGCCACTAAATA
65 TGGACTTTTAAGAAAAAGGATGCCACTGAGGCGTGAA--TTTAAGAAAAAGGATGCCACTAAATA
* * * *
11034 GTGGACTTTGAAGAAAAAGGATGCCACTGAGTCATGGACTTTGGAGAAAAGG-TGTCACTGAGTC
1 GTGGACTTTGAAGAAAAATGATGCCACTGAGTCATGGAC-TTAGA-AAAAGGATGCCACTGAGTA
11098 GTGGACTTT
64 GTGGACTTT
11107 AAAGGAAATA
Statistics
Matches: 174, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
125 3 0.02
126 83 0.48
127 5 0.03
128 2 0.01
129 53 0.30
130 22 0.13
131 6 0.03
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (127 bp):
GTGGACTTTGAAGAAAAATGATGCCACTGAGTCATGGACTTAGAAAAAGGATGCCACTGAGTAGT
GGACTTTTAAGAAAAAGGATGCCACTGAGGCGTGAATTTAAGAAAAAGGATGCCACTAAATA
Found at i:11096 original size:31 final size:33
Alignment explanation
Indices: 10724--11106 Score: 321
Period size: 33 Copynumber: 12.0 Consensus size: 33
10714 ACGCTTTAAA
* ** **
10724 AAGAAAAAGG-TGCCACGGAGTTGTGGACTTAA
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
* **
10756 AAGGAATAAGG-TGCCA-TGGAGTTGTGGACTTTG
1 AA-GAAAAAGGATGCCACT-GAGTCATGGACTTTG
* *
10789 AAGGAAATGGATGCCACTGAGTCATGGAC-TT-
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
*
10820 -AGAAAAAGGATGCCACTGAGT-AGTGGACTTTT
1 AAGAAAAAGGATGCCACTGAGTCA-TGGACTTTG
* *
10852 AAGAAAAAGGATGCCACTGAGTCGTGGA-ATT-
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
* *
10883 -AGAAAAAGGATGCCACTAAGTCGTGGACTTTG
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
* * * * *
10915 AAGAAAAATGATGCCGCTAAGTCGTGAAC-TT-
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
*
10946 -AGAAAAAGGATGCCACTGAGTCATGGACTTTT
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
* * * * * *
10978 AAGAAAAATGATGCCATTGAGGCGTGAACTTTT
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
* * *
11011 AAGAAAAATGATGCCACTAAAT-AGTGGACTTTG
1 AAGAAAAAGGATGCCACTGAGTCA-TGGACTTTG
11044 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
* * *
11077 GAG-AAAAGG-TGTCACTGAGTCGTGGACTTT
1 AAGAAAAAGGATGCCACTGAGTCATGGACTTT
11107 AAAGGAAATA
Statistics
Matches: 293, Mismatches: 41, Indels: 35
0.79 0.11 0.09
Matches are distributed among these distances:
29 1 0.00
30 73 0.25
31 25 0.09
32 19 0.06
33 173 0.59
34 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (33 bp):
AAGAAAAAGGATGCCACTGAGTCATGGACTTTG
Found at i:25038 original size:162 final size:164
Alignment explanation
Indices: 24831--25128 Score: 392
Period size: 162 Copynumber: 1.8 Consensus size: 164
24821 ACAATGTTTG
* * * * **
24831 ATGAATTTTAAAAAATTTTAAATCGAAAAAAATCCCTCCAAAAAAATTTATGAAGTGGAAAACTC
1 ATGAATTTTAAAAAATTTAAAAACAAAAAAAATCCCTCCAAAAAAATTTACGAAGTAAAAAACTC
* ** * *
24896 AGTTTTTTGGATAA-AAAAGAAATTTCAA-GAAAAAATGAGAAACT-CATGAAAATGAATGAATT
66 AGTATTTCAGA-AACAAAAG-AATTTCAAGGAAAAAATGAAAAACTGAATGAAAATGAATGAATT
*
24958 TTTGAAAACTGATTTAGAAGTAAATAATAATATTTA
129 TTTAAAAACTGATTTAGAAGTAAATAATAATATTTA
*
24994 ATGAA-TTTAAAAAA-TTAAAAACAAAGAAAAATCACCT-TAAAAAAATTTACGAAGTAAAAAAC
1 ATGAATTTTAAAAAATTTAAAAACAAA-AAAAATC-CCTCCAAAAAAATTTACGAAGTAAAAAAC
*
25056 TCTGTATTTCAGAAACAAAAGAATTTCAAGGAAAAAATGAAAAACTGAATGAAAATGAATGAATT
64 TCAGTATTTCAGAAACAAAAGAATTTCAAGGAAAAAATGAAAAACTGAATGAAAATGAATGAATT
25121 TTTAAAAA
129 TTTAAAAA
25129 ATAATTTAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
161 18 0.16
162 66 0.57
163 32 0.28
ACGTcount: A:0.54, C:0.08, G:0.11, T:0.27
Consensus pattern (164 bp):
ATGAATTTTAAAAAATTTAAAAACAAAAAAAATCCCTCCAAAAAAATTTACGAAGTAAAAAACTC
AGTATTTCAGAAACAAAAGAATTTCAAGGAAAAAATGAAAAACTGAATGAAAATGAATGAATTTT
TAAAAACTGATTTAGAAGTAAATAATAATATTTA
Found at i:25150 original size:21 final size:21
Alignment explanation
Indices: 25125--25169 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
25115 TGAATTTTTA
25125 AAAAATAATTTAATATGAAAT
1 AAAAATAATTTAATATGAAAT
25146 AAAAATAATTTAATATGAAAT
1 AAAAATAATTTAATATGAAAT
25167 AAA
1 AAA
25170 TCATAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (21 bp):
AAAAATAATTTAATATGAAAT
Found at i:25312 original size:185 final size:189
Alignment explanation
Indices: 24978--25340 Score: 538
Period size: 185 Copynumber: 1.9 Consensus size: 189
24968 GATTTAGAAG
*
24978 TAAATAATAATATTTAATGAATTTAAAAAATTAAAAACAAAGAAAAATCACCTTAAAAAAATTTA
1 TAAATAATAATATTTAATGAATTTAAAAAATTAAAAACAAAGAAAAATCACCTCAAAAAAATTTA
** * *
25043 CGAAGTAAAAAACTCTGTATTTCAGAAACAAAAGAATTTCAAGGAAAAAATGAAAAACTGAATGA
66 CGAAGTAAAAAACTCCATATTTCAGAAACAAAAGAATTTCAAGAAAAAAATGAAAAACTGAATAA
25108 AAATGAATGAATTTTTAAAAAATAATTTAATATGAAATAAA-AATAATTTAATATGAAA
131 AAATGAATGAATTTTTAAAAAATAATTTAATATGAAATAAATAATAATTTAATATGAAA
* * * *
25166 TAAATCATAATATTTGATGAGTTTAAAAAATTAAAAATAAA-AAAAATC-CTCTCAAAAAAATTT
1 TAAATAATAATATTTAATGAATTTAAAAAATTAAAAACAAAGAAAAATCAC-CTCAAAAAAATTT
* * * * * * *
25229 ACGATGTAGAAAACTCCATATTT-TGAAATAGAAGAATTTTAAGAAAAAAATGAAAAACT-CATA
65 ACGAAGTAAAAAACTCCATATTTCAGAAACAAAAGAATTTCAAGAAAAAAATGAAAAACTGAATA
25292 AAAATGAATGAATTTTTAAAAAATAATTTAATATGAAATAAATAATAAT
130 AAAATGAATGAATTTTTAAAAAATAATTTAATATGAAATAAATAATAAT
25341 ATTTGATGAA
Statistics
Matches: 157, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
185 44 0.28
186 38 0.24
187 38 0.24
188 37 0.24
ACGTcount: A:0.57, C:0.06, G:0.08, T:0.29
Consensus pattern (189 bp):
TAAATAATAATATTTAATGAATTTAAAAAATTAAAAACAAAGAAAAATCACCTCAAAAAAATTTA
CGAAGTAAAAAACTCCATATTTCAGAAACAAAAGAATTTCAAGAAAAAAATGAAAAACTGAATAA
AAATGAATGAATTTTTAAAAAATAATTTAATATGAAATAAATAATAATTTAATATGAAA
Found at i:25330 original size:164 final size:166
Alignment explanation
Indices: 25146--25526 Score: 439
Period size: 164 Copynumber: 2.3 Consensus size: 166
25136 AATATGAAAT
* * *
25146 AAAAATAATTTAATATGAAATAAATCATAATATTTGATGAGTTTAAAAAATTAAAAATAAAAAAA
1 AAAAATAATTTAATATGAAATAAATAATAATATTTGATGAATTTAAAAAATTAAAAACAAAAAAA
* * * *
25211 ATCCTC-TCAAAAAAATTTAC-GATGTAGAAAACTCCATATT-TTGAAATAGAAG-AATTTTAA-
66 AT-CTCGCCAAAAAAATTTACGGA-GTAGAAAACTCCATATTGTAGAAACA-AAGAAATTTCAAG
* * *
25271 GAAAAAAATGAAAAACTCATAAAAATGAATGAATTTTTA
128 GAAAAAAATCAAAAACTCATAAAAATGAAGGAATTTCTA
* * * *
25310 AAAAATAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAACATTAAAACCAAGAAAA
1 AAAAATAATTTAATATGAAATAAATAATAATATTTGATGAATTTAAAAAATTAAAAACAAAAAAA
* * * *
25375 ATCTCGCCCAAAGAATTTACGGAGTAGAAAACTCCGTATTGTAGAAACAAGGAAATTTCAAGGAA
66 ATCTCGCCAAAAAAATTTACGGAGTAGAAAACTCCATATTGTAGAAACAAAGAAATTTCAAGGAA
*** * * * *
25440 AAGGCTCTAAAACTCATGAAAATGAAGGCATTTCTG
131 AAAAATCAAAAACTCATAAAAATGAAGGAATTTCTA
* * * *
25476 AAAACTGATTTAATATGAATTAAATAATAATATTTGATAAATTTAAAAAAT
1 AAAAATAATTTAATATGAAATAAATAATAATATTTGATGAATTTAAAAAAT
25527 GTTAAACTCA
Statistics
Matches: 181, Mismatches: 31, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
163 3 0.02
164 89 0.49
165 15 0.08
166 74 0.41
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (166 bp):
AAAAATAATTTAATATGAAATAAATAATAATATTTGATGAATTTAAAAAATTAAAAACAAAAAAA
ATCTCGCCAAAAAAATTTACGGAGTAGAAAACTCCATATTGTAGAAACAAAGAAATTTCAAGGAA
AAAAATCAAAAACTCATAAAAATGAAGGAATTTCTA
Found at i:25461 original size:351 final size:352
Alignment explanation
Indices: 24827--25506 Score: 801
Period size: 351 Copynumber: 1.9 Consensus size: 352
24817 AATGACAATG
* ** * * *
24827 TTTGATGAATTTTAAAAAATTTTAAATCGAAAAAAATCCCTCCAAAAAAATTTATGAAGTGGAAA
1 TTTGATGAAGTTTAAAAAATTAAAAATCAAAAAAAATCCCTCCAAAAAAATTTACGAAGTAGAAA
* * *
24892 ACTCAGTTTTTTGGATAAAAAAGAAATTTCAAGAAAAAATGAGAAACTCATGAAAATGAATGAAT
66 ACTCAGTATTTTGGATAAAAAAGAAATTTCAAGAAAAAATGAAAAACTCATAAAAATGAATGAAT
* * * *
24957 TTTTGAAAACTGATTTAGAAGTAAATAATAATATTTAATGAATTTAAAAAATTAAAAACAAAGAA
131 TTTTAAAAAATAATTTAGAAATAAATAATAATATTTAATGAATTTAAAAAATTAAAAACAAAGAA
* *
25022 AAATCACCTTAAAAAAATTTACGAAGTAAAAAACTCTGTATTTCAGAAACAAAAGAATTTCAAGG
196 AAATCACCTCAAAAAAATTTACGAAGTAAAAAACTCCGTATTTCAGAAACAAAAGAATTTCAAGG
* * *
25087 AAAAAATGAAAAACTGAATGAAAATGAATGAATTTTTAAAAAATAATTTAATATGAAATAAA-AA
261 AAAAAATCAAAAACTGAATGAAAATGAAGGAATTTCTAAAAAATAATTTAATATGAAATAAATAA
25151 TAATTTAATATGAAATAAATCATAATA
326 TAATTTAATATGAAATAAATCATAATA
*
25178 TTTGATG-AGTTTAAAAAATTAAAAAT-AAAAAAAAT-CCTCTCAAAAAAATTTACGATGTAGAA
1 TTTGATGAAGTTTAAAAAATTAAAAATCAAAAAAAATCCCTC-CAAAAAAATTTACGAAGTAGAA
* *
25240 AACTCCA-TATTTT-GA-AATAGAAG-AATTTTAAGAAAAAAATGAAAAACTCATAAAAATGAAT
65 AACT-CAGTATTTTGGATAA-AAAAGAAATTTCAAG-AAAAAATGAAAAACTCATAAAAATGAAT
* * *
25301 GAATTTTTAAAAAATAATTTAATATGAAATAAATAATAATATTTGATGAATTTTAAACATT-AAA
127 GAATTTTTAAAAAATAA-TT--TA-GAAATAAATAATAATATTTAATGAATTTAAAAAATTAAAA
* * * * * * *
25365 ACCAAGAAAAATCTCGC-CCAAAGAATTTACGGAGTAGAAAACTCCGTATTGT-AGAAAC-AAGG
188 ACAAAGAAAAATCAC-CTCAAAAAAATTTACGAAGTAAAAAACTCCGTATT-TCAGAAACAAAAG
** * * * * * *
25427 AAATTTCAAGGAAAAGGCTCTAAAACT-CATGAAAATGAAGGCATTTCTGAAAACTGATTTAATA
251 -AATTTCAAGGAAAA-AATCAAAAACTGAATGAAAATGAAGGAATTTCTAAAAAATAATTTAATA
*
25491 TGAATTAAATAATAAT
314 TGAAATAAATAATAAT
25507 ATTTGATAAA
Statistics
Matches: 276, Mismatches: 40, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
347 10 0.04
348 50 0.18
349 38 0.14
350 21 0.08
351 110 0.40
352 47 0.17
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (352 bp):
TTTGATGAAGTTTAAAAAATTAAAAATCAAAAAAAATCCCTCCAAAAAAATTTACGAAGTAGAAA
ACTCAGTATTTTGGATAAAAAAGAAATTTCAAGAAAAAATGAAAAACTCATAAAAATGAATGAAT
TTTTAAAAAATAATTTAGAAATAAATAATAATATTTAATGAATTTAAAAAATTAAAAACAAAGAA
AAATCACCTCAAAAAAATTTACGAAGTAAAAAACTCCGTATTTCAGAAACAAAAGAATTTCAAGG
AAAAAATCAAAAACTGAATGAAAATGAAGGAATTTCTAAAAAATAATTTAATATGAAATAAATAA
TAATTTAATATGAAATAAATCATAATA
Found at i:34336 original size:14 final size:16
Alignment explanation
Indices: 34317--34360 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
34307 ATTTTTGTTA
34317 TAATATA-ATATTT-T
1 TAATATATATATTTAT
*
34331 TAATATATTTATTTAT
1 TAATATATATATTTAT
*
34347 TAAAATATATATTT
1 TAATATATATATTT
34361 GTATATAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 7 0.28
15 5 0.20
16 13 0.52
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TAATATATATATTTAT
Found at i:34379 original size:17 final size:18
Alignment explanation
Indices: 34343--34395 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
34333 ATATATTTAT
34343 TTAT-TAAAATATATATTTG
1 TTATATAAAAT-TA-ATTTG
*
34362 -TATATAGAATTAATTTG
1 TTATATAAAATTAATTTG
34379 TTATATAAAATTAATTT
1 TTATATAAAATTAATTT
34396 TTAAATAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
17 5 0.17
18 20 0.67
19 5 0.17
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (18 bp):
TTATATAAAATTAATTTG
Found at i:34806 original size:32 final size:33
Alignment explanation
Indices: 34746--34810 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
34736 CACACCAAGA
*
34746 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATTATGCATTGTATCGATACAT
* *
34779 TGTATCGATAGA-TATTCATTGTATCGATACAT
1 TGTATCGATACATTATGCATTGTATCGATACAT
34811 GGACAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTATGCATTGTATCGATACAT
Found at i:34899 original size:13 final size:13
Alignment explanation
Indices: 34881--34905 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34871 CATGGCACAT
34881 TGTATCGATACAA
1 TGTATCGATACAA
34894 TGTATCGATACA
1 TGTATCGATACA
34906 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:38334 original size:164 final size:166
Alignment explanation
Indices: 37956--38405 Score: 506
Period size: 164 Copynumber: 2.7 Consensus size: 166
37946 TTTTCAAATT
* * * **
37956 ACGAAATTTTCTTCTTCGTAAATTTTTTTGAAAGGAA--TTTCATAGGTTTAAAATTTTTAAAAT
1 ACGAAGTTTTCTTCTTCGTAAATTTTTTTGAGA-GAATTTTTC-TTGGTTTTTAATTTTTAAAAT
* * *
38019 TCATCAAATATTATTATTTATATCACATTAAAAC-ATTTTTCAAAAATTCCTTCATTTTCTTGAG
64 TCATCAAATATTATTATTTAT-TCACATTAAATCAATTTTT-AAAAATTCATTCATTTTCTTCAG
*
38083 TTTTTGGATTTTTTTCGTTAAATTTCCCTATTCCTAAAAA
127 TTTTTGGATTTTTTTCGTTAAAATTCCCTATTCCTAAAAA
* **
38123 ACGAAGTTTT-TTACTTCGTAAATTTTTTTGGGAGGCTTTTTCTTGGTTTTTAATTTTTAAAATT
1 ACGAAGTTTTCTT-CTTCGTAAATTTTTTTGAGAGAATTTTTCTTGGTTTTTAATTTTTAAAATT
38187 CATCAAATATTATTATTTAATTCTA-A-TAAATCAATTTTTAAAAATTCATTCATTTTCATTCA-
65 CATCAAATATTATTATTT-ATTC-ACATTAAATCAATTTTTAAAAATTCATTCATTTTC-TTCAG
* * ** * *
38249 TTTTT-TATTTTTTTC-TTAAAATTCCCTCGTTTTTGAAAT
127 TTTTTGGATTTTTTTCGTTAAAATTCCCT-ATTCCTAAAAA
* * * *
38288 ATGGAGTTTTCTTC-TCGTAAATTTTTTCGAGAGAATTTTTCTTGGTTTTTAATTTTTAAAATTT
1 ACGAAGTTTTCTTCTTCGTAAATTTTTTTGAGAGAATTTTTCTTGGTTTTTAATTTTTAAAATTC
* * * * *
38352 ATAAAATATTATTATTTTTTCACATTAATTTAATTTTCAAAAATTCATTCATTT
66 ATCAAATATTATTATTTATTCACATTAAATCAATTTTTAAAAATTCATTCATTT
38406 CAATAAATTT
Statistics
Matches: 242, Mismatches: 30, Indels: 25
0.81 0.10 0.08
Matches are distributed among these distances:
162 1 0.00
163 4 0.02
164 98 0.40
165 24 0.10
166 32 0.13
167 76 0.31
168 7 0.03
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (166 bp):
ACGAAGTTTTCTTCTTCGTAAATTTTTTTGAGAGAATTTTTCTTGGTTTTTAATTTTTAAAATTC
ATCAAATATTATTATTTATTCACATTAAATCAATTTTTAAAAATTCATTCATTTTCTTCAGTTTT
TGGATTTTTTTCGTTAAAATTCCCTATTCCTAAAAA
Found at i:38491 original size:147 final size:147
Alignment explanation
Indices: 38284--38553 Score: 366
Period size: 147 Copynumber: 1.8 Consensus size: 147
38274 CTCGTTTTTG
* * *
38284 AAATATGGAGTTTTCTTCTCGTAAATTTTTTCGAGAGAATTTTTCTTGGTTTTTAATTTTTAAAA
1 AAATATAGAGTTTTCTACTCGTAAATTTTTTCGAGAGAATTTTTCTTCGTTTTTAATTTTTAAAA
* *
38349 TTTATAAAATATTATTATTT-TTTCACATTAATTTAATTTTC-AAAAATTCATTCATTTCAATAA
66 TTTATAAAATATTATTATTTATTTCACATT-ATATAATTTTCAAAAAATTAATTCATTTCAATAA
38412 ATTTTAAACTTTTTTCTT
130 ATTTTAAACTTTTTTCTT
* * * *
38430 AAATATAGAGTTTTCTACTCTGTAAATTTTTTC-ATGGGGATTTTTCTTCTTTTTTTATTTTTAA
1 AAATATAGAGTTTTCTACTC-GTAAATTTTTTCGA-GAGAATTTTTCTTCGTTTTTAATTTTTAA
* * * * *
38494 AATTTATCAAATTTTATTATTTATTTTATATTATATATTTTTCAAAAAATTAATTCATTT
64 AATTTATAAAATATTATTATTTATTTCACATTATATAATTTTCAAAAAATTAATTCATTT
38554 TCATGAGTTT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
146 19 0.18
147 65 0.61
148 22 0.21
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.54
Consensus pattern (147 bp):
AAATATAGAGTTTTCTACTCGTAAATTTTTTCGAGAGAATTTTTCTTCGTTTTTAATTTTTAAAA
TTTATAAAATATTATTATTTATTTCACATTATATAATTTTCAAAAAATTAATTCATTTCAATAAA
TTTTAAACTTTTTTCTT
Found at i:39060 original size:11 final size:10
Alignment explanation
Indices: 39044--39093 Score: 64
Period size: 11 Copynumber: 4.7 Consensus size: 10
39034 ATGATCAGCT
39044 GAAAAAAGAGA
1 GAAAAAA-AGA
39055 GAAAAATAAGA
1 GAAAAA-AAGA
39066 GAAAGAAAAGA
1 GAAA-AAAAGA
39077 GAAAAAAAGA
1 GAAAAAAAGA
*
39087 GAGAAAA
1 GAAAAAA
39094 TAGGTTGAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
10 12 0.33
11 21 0.58
12 3 0.08
ACGTcount: A:0.74, C:0.00, G:0.24, T:0.02
Consensus pattern (10 bp):
GAAAAAAAGA
Found at i:40150 original size:162 final size:161
Alignment explanation
Indices: 39884--40972 Score: 1395
Period size: 162 Copynumber: 6.8 Consensus size: 161
39874 TATTTCCATG
*
39884 TTTATTTTTTCTAATCTTCTATATTCCTAT-GGCATCTGTAGGGGTATAAAAGATTTCAAAAACC
1 TTTATTTTTT-TAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAACC
* * * * *
39948 TTCCGTATTCTTTCAGGCTTCCATTAGGGTATGAAATGGTATTTTCAAAAATAAATAAAATAAAA
65 TTTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAAA
40013 TTAAATTGGTATTCTTGGGATAAATTCTAATA
130 TTAAATTGGTATTCTTGGGATAAATTCTAATA
* * * *
40045 TTTATTTTTTCTAATCTTTTGTATTCCTATGGGTATTTGTAGGGATATAAAAGATTTCAAAAACC
1 TTTATTTTTT-TAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAACC
* *
40110 TTTCGTATTCTTTCGGGCTTCCATTAGGATATGAAATGGTATTTTCGAAAATAAATAAAATTAAA
65 TTTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAAA
40175 TTAAATTGGTATTCTTGGGATAAATTCTAATA
130 TTAAATTGGTATTCTTGGGATAAATTCTAATA
* * *
40207 TTTATTTTTTTCAAT-TTTTCTTATTCCTATGAGCATCTATAGGGGTATAAAAGATTTCAAAAAC
1 TTTATTTTTTT-AATCTTTT-ATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAAC
* * * *
40271 CTTTCGTATTCTTTCAGGCTTCTATTAGGATATGAAATGGTATTTTCGAAAATAAATAAAATTAA
64 CTTTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAA
40336 ATTAAATTGGTATTCTTGGGATAAATTCTAATA
129 ATTAAATTGGTATTCTTGGGATAAATTCTAATA
* * * ** *
40369 TTTATTTTTTCCAATCTTTTATATTTCTATGGGCATCCGTAGAAGTATACAAGATTTCAAAAACC
1 TTTATTTTTT-TAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAACC
* ** * * *
40434 TTTCGCATTCTTT-TAGCTTCAATTAGGATACGAAATGGTATTTTCGAAAATAAATAAAATAAAA
65 TTTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAAA
*
40498 TTAAATTGGTGTTCTTGGGATAAATTCTAATA
130 TTAAATTGGTATTCTTGGGATAAATTCTAATA
* * * * ** * *
40530 TTTATTTTTTTGACCTTTTTTATTCTTATAAGCATCTGTAGGGGCATAAAAGATTTCAAAAGCCT
1 TTTATTTTTTTAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAACCT
*
40595 TTCGTATTCTTTCGGGCTTCCATTAGGATAAGAAATGGTATTTTCAAAAATAAATAAAATTAAAT
66 TTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAAAT
* * * *
40660 TGAACTAGTATTCTTGGGATAAATTTTAATA
131 TAAATTGGTATTCTTGGGATAAATTCTAATA
* * ** *
40691 TATATATTTTTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAGAAACCT
1 TTTATTTTTTTAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAACCT
* * * *
40756 TTCGTATCCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAATTAAAT
66 TTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAAAT
* * * ** *
40821 TGAATT--AATACTTTCG--AGA----AA-A
131 TAAATTGGTATTCTTGGGATAAATTCTAATA
** *
40843 ---A---TTTTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAGAAACCT
1 TTTATTTTTTTAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAACCT
* * * *
40902 TTCGTATCCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAATTAAAT
66 TTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAAAT
*
40967 TGAATT
131 TAAATT
40973 AATACTTTCG
Statistics
Matches: 838, Mismatches: 84, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
146 129 0.15
149 1 0.00
152 1 0.00
153 2 0.00
157 2 0.00
159 6 0.01
160 52 0.06
161 309 0.37
162 332 0.40
163 4 0.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (161 bp):
TTTATTTTTTTAATCTTTTATATTCCTATGGGCATCTGTAGGGGTATAAAAGATTTCAAAAACCT
TTCGTATTCTTTCGGGCTTCCATTAGGATACGAAATGGTATTTTCAAAAATAAATAAAATTAAAT
TAAATTGGTATTCTTGGGATAAATTCTAATA
Found at i:41055 original size:146 final size:146
Alignment explanation
Indices: 40698--41012 Score: 630
Period size: 146 Copynumber: 2.2 Consensus size: 146
40688 ATATATATAT
40698 TTTTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAGAAACCTTTCGTAT
1 TTTTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAGAAACCTTTCGTAT
40763 CCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAATTAAATTGAATTA
66 CCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAATTAAATTGAATTA
40828 ATACTTTCGAGAAAAA
131 ATACTTTCGAGAAAAA
40844 TTTTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAGAAACCTTTCGTAT
1 TTTTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAGAAACCTTTCGTAT
40909 CCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAATTAAATTGAATTA
66 CCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAATTAAATTGAATTA
40974 ATACTTTCGAGAAAAA
131 ATACTTTCGAGAAAAA
40990 TTTTAATCTTTTATATTCCTATG
1 TTTTAATCTTTTATATTCCTATG
41013 AGCGTTCGTC
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
146 169 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (146 bp):
TTTTAATCTTTTATATTCCTATGGGCATCCATAGGGGTATAAAAGATTTCAGAAACCTTTCGTAT
CCTTTCGGGCTTCTATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAATTAAATTGAATTA
ATACTTTCGAGAAAAA
Found at i:41573 original size:142 final size:142
Alignment explanation
Indices: 41312--41578 Score: 378
Period size: 142 Copynumber: 1.9 Consensus size: 142
41302 GGCATTTTTG
* * * *
41312 TAATTTTTTAGAATCGAGTCTTATGTTGTCACCTGATCTACTTTTATGCCGAAGGTAGATATTTA
1 TAATTTTTTAGAATCGAGTCCTAGGTTATCACCTGATCTACTTTTATACCGAAGGTAGATATTTA
* * *
41377 GGATAGGTTCATCTCATCTATTATCCTTGTTAAATCCTTTAGGGGTATCAGGTACTTTTATGTCG
66 GGATAGGTTCATCTCACCTATTATCCTTGTTAAATCCTATAGGAGTATCAGGTACTTTTATGTCG
41442 TAGGTATTCCCA
131 TAGGTATTCCCA
* *
41454 TAATTTTTTAG-AGCTGAGTCCTAGGTTATCACC-GAGTCTGCTTTTATACCGAAGGTAGATATT
1 TAATTTTTTAGAATC-GAGTCCTAGGTTATCACCTGA-TCTACTTTTATACCGAAGGTAGATATT
* * *
41517 TAGGATAGGTTTATCTCACCTATTATCCTT-TCTAAGTCCTATAGGAGTATCGGGTACTTTTA
64 TAGGATAGGTTCATCTCACCTATTATCCTTGT-TAAATCCTATAGGAGTATCAGGTACTTTTA
41579 CGTCAAAGGT
Statistics
Matches: 110, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
141 5 0.05
142 105 0.95
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (142 bp):
TAATTTTTTAGAATCGAGTCCTAGGTTATCACCTGATCTACTTTTATACCGAAGGTAGATATTTA
GGATAGGTTCATCTCACCTATTATCCTTGTTAAATCCTATAGGAGTATCAGGTACTTTTATGTCG
TAGGTATTCCCA
Found at i:43511 original size:23 final size:21
Alignment explanation
Indices: 43489--43528 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
43479 ATGAAATCCA
*
43489 CAAAGATGTATCTATATATTC
1 CAAAAATGTATCTATATATTC
**
43510 CATTAATGTATCTATATAT
1 CAAAAATGTATCTATATAT
43529 CATCAGATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.42
Consensus pattern (21 bp):
CAAAAATGTATCTATATATTC
Found at i:45231 original size:38 final size:38
Alignment explanation
Indices: 45148--45236 Score: 106
Period size: 38 Copynumber: 2.3 Consensus size: 38
45138 TTTTATAAAG
*
45148 TTTGATGCCATTTAGGTCACTTTCCATGATATAGAGAC
1 TTTGATGTCATTTAGGTCACTTTCCATGATATAGAGAC
* * * * * *
45186 TTTGATGTCATTTAGGTTATTTTTCATTATCTAGGGAC
1 TTTGATGTCATTTAGGTCACTTTCCATGATATAGAGAC
*
45224 TTTGATGTAATTT
1 TTTGATGTCATTT
45237 TATGAATGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (38 bp):
TTTGATGTCATTTAGGTCACTTTCCATGATATAGAGAC
Found at i:45286 original size:96 final size:96
Alignment explanation
Indices: 45099--45294 Score: 216
Period size: 96 Copynumber: 2.0 Consensus size: 96
45089 ACTTTATATG
* *
45099 ATTTAGGTAATTTTCCATGATTTAGGAACTTTGGTGCAATTTTATAAAGTTTGATGCCATTTAGG
1 ATTTAGGTAATTTTCCATGATCTAGGAACTTTGATGCAATTTTATAAAGTTTGATGCCATTTAGG
* *
45164 TCACTTTCCATGATATAGAGACTTTGATGTC
66 TCACTTTCCATGATATAAAGACTTTGATGTA
* * * * * * *
45195 ATTTAGGTTATTTTTCATTATCTAGGGACTTTGATGTAATTTTATGAA-TGTTGATGTC-TTTGA
1 ATTTAGGTAATTTTCCATGATCTAGGAACTTTGATGCAATTTTATAAAGT-TTGATGCCATTT-A
* ** * *
45258 GGTCATTTTCTGTGATCTAAAGATTTTGATGTA
64 GGTCACTTTCCATGATATAAAGACTTTGATGTA
45291 ATTT
1 ATTT
45295 TATAAATTTT
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
95 4 0.05
96 78 0.95
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.46
Consensus pattern (96 bp):
ATTTAGGTAATTTTCCATGATCTAGGAACTTTGATGCAATTTTATAAAGTTTGATGCCATTTAGG
TCACTTTCCATGATATAAAGACTTTGATGTA
Found at i:45352 original size:58 final size:57
Alignment explanation
Indices: 45186--45382 Score: 191
Period size: 58 Copynumber: 3.4 Consensus size: 57
45176 ATATAGAGAC
* * * *
45186 TTTGATGTCATTTAGGTTATTTTTCATTA-TCTAGGGACTTTGATGTAATTTTATGAAT
1 TTTGATGTCATTTAGGTCATTTTCCATGACT-TA-GGAATTTGATGTAATTTTATGAAT
* ** * * * *
45244 GTTGATGTC-TTTGAGGTCATTTTCTGTGATCTAAAGATTTTGATGTAATTTTATAAAT
1 TTTGATGTCATTT-AGGTCATTTTCCATGA-CTTAGGAATTTGATGTAATTTTATGAAT
* * *
45302 TTTGATGTCATTTAGGTCATTTTCCATGACTTAGGTAATTGGATGCAATTTTATGAGT
1 TTTGATGTCATTTAGGTCATTTTCCATGACTTAGG-AATTTGATGTAATTTTATGAAT
* *
45360 TGTGATGTCATTTAGATCATTTT
1 TTTGATGTCATTTAGGTCATTTT
45383 TTATGATTTA
Statistics
Matches: 112, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
57 7 0.06
58 100 0.89
59 4 0.04
60 1 0.01
ACGTcount: A:0.24, C:0.08, G:0.19, T:0.49
Consensus pattern (57 bp):
TTTGATGTCATTTAGGTCATTTTCCATGACTTAGGAATTTGATGTAATTTTATGAAT
Found at i:45406 original size:58 final size:57
Alignment explanation
Indices: 45188--45410 Score: 175
Period size: 58 Copynumber: 3.9 Consensus size: 57
45178 ATAGAGACTT
* * * * * * *
45188 TGATGTCATTTAGGTTATTTTTCATTATCTAGGGACTTTGATGTAATTTTATGAATG
1 TGATGTCATTTAGGTCATTTTCCATGATCTAAGAACTTTGATGCAATTTTATGATTG
** * * * *
45245 TTGATGTC-TTTGAGGTCATTTTCTGTGATCTAA-AGATTTTGATGTAATTTTATAAATTT
1 -TGATGTCATTT-AGGTCATTTTCCATGATCTAAGA-ACTTTGATGCAATTTTAT-GATTG
* *
45304 TGATGTCATTTAGGTCATTTTCCATGA-CTTAGGTAA-TTGGATGCAATTTTATGAGTTG
1 TGATGTCATTTAGGTCATTTTCCATGATC-TAAG-AACTTTGATGCAATTTTATGA-TTG
* ** * *
45362 TGATGTCATTTAGATCATTTTTTATGATTTAAGAACTTTCATGCAATTT
1 TGATGTCATTTAGGTCATTTTCCATGATCTAAGAACTTTGATGCAATTT
45411 CAAATTATTA
Statistics
Matches: 130, Mismatches: 25, Indels: 20
0.74 0.14 0.11
Matches are distributed among these distances:
57 7 0.05
58 116 0.89
59 6 0.05
60 1 0.01
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.48
Consensus pattern (57 bp):
TGATGTCATTTAGGTCATTTTCCATGATCTAAGAACTTTGATGCAATTTTATGATTG
Found at i:45410 original size:116 final size:116
Alignment explanation
Indices: 45186--45410 Score: 251
Period size: 116 Copynumber: 1.9 Consensus size: 116
45176 ATATAGAGAC
* * * * * *
45186 TTTGATGTCATTTAGGTTATTTTTCATTATCTAGGGACTTTGATGTAATTTTATGAATGTTGATG
1 TTTGATGTCATTTAGGTCATTTTCCATGATCTAGGGAATTGGATGCAATTTTATGAATGTTGATG
* * * * *
45251 TCTTTGAGGTCATTTTCTGTGATCTAAAGATTTTGATGTAATTTTATAAAT
66 TCTTTGAGATCATTTTCTATGATCTAAAGACTTTCATGCAATTTTATAAAT
* *
45302 TTTGATGTCATTTAGGTCATTTTCCATGA-CTTAGGTAATTGGATGCAATTTTATGAGT-TGTGA
1 TTTGATGTCATTTAGGTCATTTTCCATGATC-TAGGGAATTGGATGCAATTTTATGAATGT-TGA
* *
45365 TGTCATTT-AGATCATTTTTTATGAT-TTAAGAACTTTCATGCAATTT
64 TGTC-TTTGAGATCATTTTCTATGATCTAAAG-ACTTTCATGCAATTT
45411 CAAATTATTA
Statistics
Matches: 90, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
115 6 0.07
116 81 0.90
117 3 0.03
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.48
Consensus pattern (116 bp):
TTTGATGTCATTTAGGTCATTTTCCATGATCTAGGGAATTGGATGCAATTTTATGAATGTTGATG
TCTTTGAGATCATTTTCTATGATCTAAAGACTTTCATGCAATTTTATAAAT
Found at i:46682 original size:16 final size:16
Alignment explanation
Indices: 46661--46704 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
46651 AAAGCATAAT
46661 CATAATTTCATAAAAG
1 CATAATTTCATAAAAG
*
46677 CATAATTTTATAAAAG
1 CATAATTTCATAAAAG
*
46693 CACAATTTCATA
1 CATAATTTCATA
46705 GAACATGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.48, C:0.14, G:0.05, T:0.34
Consensus pattern (16 bp):
CATAATTTCATAAAAG
Found at i:48601 original size:48 final size:49
Alignment explanation
Indices: 48530--48637 Score: 128
Period size: 48 Copynumber: 2.2 Consensus size: 49
48520 ACATTAAAAT
* * * *
48530 TGTATCGATACATCATGCATTGTATCGATACAATCTGG-GAAACCCAGA
1 TGTATCGATACAACATGCATTGTATCAATACAATCTGGAAAAACCCAAA
** * * *
48578 TGTATCGATACAAGTTGCATTGTATCAATACATTTTGGAAAAATCCAAA
1 TGTATCGATACAACATGCATTGTATCAATACAATCTGGAAAAACCCAAA
48627 TGTATCGATAC
1 TGTATCGATAC
48638 TTTGAATATA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
48 32 0.64
49 18 0.36
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31
Consensus pattern (49 bp):
TGTATCGATACAACATGCATTGTATCAATACAATCTGGAAAAACCCAAA
Found at i:54568 original size:20 final size:20
Alignment explanation
Indices: 54530--54583 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
54520 GGGCTAATTG
54530 TATCGATACAATTCTGAATGA
1 TATCGATAC-ATTCTGAATGA
* *
54551 -ATCGATACATTTTGGAATTA
1 TATCGATACATTCT-GAATGA
54571 TATCGATACATTC
1 TATCGATACATTC
54584 CTATATGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 4 0.14
20 13 0.46
21 11 0.39
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (20 bp):
TATCGATACATTCTGAATGA
Found at i:54577 original size:21 final size:20
Alignment explanation
Indices: 54525--54583 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 20
54515 CCATTGGGCT
*
54525 AATTGTATCGATACAATTCTG
1 AATTATATCGATAC-ATTCTG
* *
54546 AATGA-ATCGATACATTTTGG
1 AATTATATCGATACATTCT-G
54566 AATTATATCGATACATTC
1 AATTATATCGATACATTC
54584 CTATATGTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 4 0.13
20 13 0.42
21 14 0.45
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37
Consensus pattern (20 bp):
AATTATATCGATACATTCTG
Found at i:54680 original size:20 final size:20
Alignment explanation
Indices: 54652--54736 Score: 85
Period size: 20 Copynumber: 4.6 Consensus size: 20
54642 TCACATAATA
*
54652 TATCAATACATTGCAAGGTG
1 TATCGATACATTGCAAGGTG
*
54672 TATCGATACATTACAAGGTG
1 TATCGATACATTGCAAGGTG
54692 TATCGAT--A---CAA--TG
1 TATCGATACATTGCAAGGTG
*
54705 TATCGATATATTGCAAGGTG
1 TATCGATACATTGCAAGGTG
*
54725 TATCAATACATT
1 TATCGATACATT
54737 TTCATGTGTA
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
13 9 0.17
15 4 0.07
18 4 0.07
20 37 0.69
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (20 bp):
TATCGATACATTGCAAGGTG
Found at i:54712 original size:33 final size:33
Alignment explanation
Indices: 54670--54734 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
54660 CATTGCAAGG
*
54670 TGTATCGATACATTACAAGGTGTATCGATACAA
1 TGTATCGATACATTACAAGGTGTATCAATACAA
* *
54703 TGTATCGATATATTGCAAGGTGTATCAATACA
1 TGTATCGATACATTACAAGGTGTATCAATACA
54735 TTTTCATGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATTACAAGGTGTATCAATACAA
Found at i:61353 original size:52 final size:52
Alignment explanation
Indices: 61283--61403 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
61273 GAAAATTTAT
*
61283 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
61335 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
61387 CTGCATGTATCAATACA
1 CTGCATGTATCGATACA
61404 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:61416 original size:52 final size:52
Alignment explanation
Indices: 61283--61423 Score: 187
Period size: 52 Copynumber: 2.7 Consensus size: 52
61273 GAAAATTTAT
* *
61283 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCAATACA-TAAGATAGTGTATCGATACATCTGGGCAAATTTGC
* *** *
61335 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCAATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
61387 CTGCATGTATCAATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCAATACATAAGAT-AGTGTATCGATACA
61424 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 4 0.05
52 76 0.95
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCAATACATAAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:61430 original size:13 final size:13
Alignment explanation
Indices: 61412--61436 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61402 CAAAGATCAG
61412 TGTATCGATACAA
1 TGTATCGATACAA
61425 TGTATCGATACA
1 TGTATCGATACA
61437 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:61514 original size:33 final size:33
Alignment explanation
Indices: 61477--61543 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
61467 AGTAGCTTAA
61477 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
61510 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
61543 A
1 A
61544 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:61517 original size:13 final size:13
Alignment explanation
Indices: 61499--61523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61489 CAAAAAAATA
61499 TGTATCGATACAT
1 TGTATCGATACAT
61512 TGTATCGATACA
1 TGTATCGATACA
61524 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:62488 original size:79 final size:79
Alignment explanation
Indices: 62313--63146 Score: 976
Period size: 79 Copynumber: 10.5 Consensus size: 79
62303 AAATTTAATA
* * ** * * * **
62313 TTTTGGAGATAAAACCGGGGTCAGAGTA-CCCCTTTAGAAATAACGAGGTTAGAGTATATCCCTA
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCC-TCAAAAATAACGAGGTTGGAG--TATCCCCG
* * *
62377 ATGGTGAAAAATCGATG
63 ATTGTGAAAAATTGGTG
** * * * *
62394 TTTTGGAAATAAAATCGGGGTTAAAGTATCCCCACGAAAATAACAAGGTTGGAGTATTCCCGATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
* *
62459 GTGAAAATTTGATG
66 GTGAAAAATTGGTG
* * *
62473 TTTTGGAAATAAAATCGAGGTTAGAGTATCCCCTTAAAAATAACGAGGTTGGAGTATCCCCGATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
* *
62538 ATGAAAAATTGGTA
66 GTGAAAAATTGGTG
* * * * * *
62552 TTTTGGAAATAAAACCGAGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGAAGTATCCTCGATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
*
62617 GTGAAAATTTGGTG
66 GTGAAAAATTGGTG
* ** *
62631 TTTTGGAAATAAAATCGAGGTTAAAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
* *
62696 GTGAAAATTTGGTA
66 GTGAAAAATTGGTG
* * *
62710 TCTTT-GAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCC-AT
1 T-TTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGA-
*
62773 TTGTGAAATATTGGTG
64 TTGTGAAAAATTGGTG
* * * * * *
62789 TCTTGCAAATAAAATAGGGGTTGAAGTATCCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
*
62854 GTGAAAATTTGGTG
66 GTGAAAAATTGGTG
* * *
62868 TTTTGGAAATAAAATCGGGGTTGGAGTATCTCCTCAGAAATAACG-GAGTTGGACTATCCCCGAT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAG-GTTGGAGTATCCCCGAT
*
62932 TGTAAAAAATTGGTG
65 TGTGAAAAATTGGTG
* * * * *
62947 TCTTGGAAATAAAACCGGGGTTGGAGTATCTCCTCAAAAATAACGGGGTTGGAGTATCACCGATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
63012 GTGAAAAATTGGTG
66 GTGAAAAATTGGTG
* * * *
63026 TTTTGAAAATAAAATCGGGGTT-GAGTATCCTCTCAAAAATAACGGGGTTGGAGTATCCCCAATT
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
63090 GTGAAAAATTGGTG
66 GTGAAAAATTGGTG
* * * * *
63104 TTTTAGAAATAAAACCAGGGTTGGGGTATCCCCTCGAAAATAA
1 TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAA
63147 AAACATGAAT
Statistics
Matches: 654, Mismatches: 91, Indels: 18
0.86 0.12 0.02
Matches are distributed among these distances:
78 74 0.11
79 532 0.81
80 5 0.01
81 39 0.06
82 4 0.01
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.28
Consensus pattern (79 bp):
TTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATT
GTGAAAAATTGGTG
Found at i:65524 original size:50 final size:50
Alignment explanation
Indices: 65470--65604 Score: 216
Period size: 50 Copynumber: 2.7 Consensus size: 50
65460 AAAAATGCCT
* *
65470 GAATGTATCGATACATTGAAAAATGTATCGATACATCTAGGTAAAACCCA
1 GAATGTATCGATACAATGAACAATGTATCGATACATCTAGGTAAAACCCA
* * *
65520 GAATGTATCGATACAATGAACAATGTATCGATACATCTGGGTAACACCCT
1 GAATGTATCGATACAATGAACAATGTATCGATACATCTAGGTAAAACCCA
*
65570 GAATGTATCGATAAAATGAACAATGTATCGATACA
1 GAATGTATCGATACAATGAACAATGTATCGATACA
65605 AATTGTGAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.26
Consensus pattern (50 bp):
GAATGTATCGATACAATGAACAATGTATCGATACATCTAGGTAAAACCCA
Found at i:66233 original size:34 final size:36
Alignment explanation
Indices: 66193--66287 Score: 135
Period size: 34 Copynumber: 2.8 Consensus size: 36
66183 AGGGGTACTT
*
66193 TGCTCTTTAAGGACAAAGGAAAAGA-AGTACGTC-C
1 TGCTCTTCAAGGACAAAGGAAAAGAGAGTACGTCAC
* *
66227 TGCTCTTCGAGGACAAAGGAAAA-AGAGTATGTCAC
1 TGCTCTTCAAGGACAAAGGAAAAGAGAGTACGTCAC
66262 -GCTCTTCAAGGACAAAGGAAAAGAGA
1 TGCTCTTCAAGGACAAAGGAAAAGAGA
66288 ATGAAATGGG
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
33 1 0.02
34 49 0.91
35 4 0.07
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (36 bp):
TGCTCTTCAAGGACAAAGGAAAAGAGAGTACGTCAC
Found at i:66353 original size:42 final size:41
Alignment explanation
Indices: 66270--66373 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 41
66260 ACGCTCTTCA
* * *
66270 AGGACAAAGGAAAAGA-GAATGAAATGGGTTATGCTGCTTG
1 AGGACAAAGGAAAAAAGGAAAGAAATGCGTTATGCTGCTTG
66310 AGGACAAAGGAAAAAAGGAAAGAAAATGCGTCT-TGCT-CTTTG
1 AGGACAAAGGAAAAAAGGAAAG-AAATGCGT-TATGCTGC-TTG
66352 AGGACAAAGGAAAAGAAGGAAA
1 AGGACAAAGGAAAA-AAGGAAA
66374 TTAAAGCGCG
Statistics
Matches: 56, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
40 15 0.27
41 5 0.09
42 28 0.50
43 8 0.14
ACGTcount: A:0.46, C:0.09, G:0.30, T:0.15
Consensus pattern (41 bp):
AGGACAAAGGAAAAAAGGAAAGAAATGCGTTATGCTGCTTG
Found at i:66497 original size:61 final size:60
Alignment explanation
Indices: 66394--66816 Score: 474
Period size: 61 Copynumber: 6.9 Consensus size: 60
66384 TCCTGCTCTT
** * **
66394 GGTGCCACCAACTTGTGTGGGCTTTGTAAGGAGAAA-GCGTCCTATTCTTTGAAGG-CGAAAA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTGCTCTTTG-AGGACG-AAA
* * ** *
66455 GGTGCCACCAGCTCGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGATTGAAA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGA-CGAAA
* *
66516 GATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCT-TTTGAGGACTGAAA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC-GAAA
* * *
66576 GGTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCATCCTGCTGTTTGGGGACTGAAA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC-GAAA
* * * * *
66637 TGTGCCACCAACTTGTGTGGGCTTTAAAATGAAAAGACATCCTGCTCTTTGAAGACTAGAA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACGA-AA
* * ** * *
66698 GGTGCCACCAACTTATGTGGGCTTTAAAATGAAAAGGTGTGCATTGCTCTTTGAGGACTAAAA
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT-C-CTGCTCTTTGAGGAC-GAAA
* * *
66761 AGTGCCACCAACTTGTGTGGGCTTTAAAAGTAAATGGCATCCTGCTCTTTGAGGAC
1 GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC
66817 TAAAAGGTTA
Statistics
Matches: 310, Mismatches: 43, Indels: 18
0.84 0.12 0.05
Matches are distributed among these distances:
60 62 0.20
61 196 0.63
62 3 0.01
63 48 0.15
64 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (60 bp):
GGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACGAAA
Found at i:66602 original size:121 final size:122
Alignment explanation
Indices: 66396--66824 Score: 521
Period size: 121 Copynumber: 3.5 Consensus size: 122
66386 CTGCTCTTGG
** * **
66396 TGCCACCAACTTGTGTGGGCTTTGTAAGGAGAAA-GCGTCCTATTCTTTGAAGG-C-GAAAAGGT
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTGCTCTTTG-AGGACTG-AAAGGT
* * *
66458 GCCACCAGCTCGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGATTGAAAGA
63 GCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
*
66518 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCTTGCT-TTTGAGGACTGAAAGGTGCC
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCC
* ** * *
66582 ACCAACTTGTGTGGGATTTAAAAGGAAAAGGCATCCTGCTGTTTGGGGACTGAAATG-
66 ACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAA-GA
* * *
66639 TGCCACCAACTTGTGTGGGCTTTAAAATGAAAAGACATCCTGCTCTTTGAAGACT-AGAAGGTGC
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGA-AAGGTGC
* * * *
66703 CACCAACTTATGTGGGCTTTAAAATGAAAAGGTGTGCATTGCTCTTTGAGGACT-AAAAA
65 CACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGT-C-CTGCTCTTTGAGGACTGAAAGA
* * *
66762 GTGCCACCAACTTGTGTGGGCTTTAAAAGTAAATGGCATCCTGCTCTTTGAGGACTAAAAGGT
1 -TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGT
66825 TAAAAGGTTT
Statistics
Matches: 264, Mismatches: 32, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
120 3 0.01
121 106 0.40
122 82 0.31
123 4 0.02
124 68 0.26
125 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (122 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCC
ACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
Found at i:66706 original size:182 final size:185
Alignment explanation
Indices: 66395--66817 Score: 518
Period size: 182 Copynumber: 2.3 Consensus size: 185
66385 CCTGCTCTTG
* ** * ** *
66395 GTGCCACCAACTTGTGTGGGCTTTGTAAGGAGAAA-GCGTCCTATTCTTTGAAGG-C-GAAAAGG
1 GTGCCACCAACTTGTGTGGGATTTAAAAGGA-AAAGGCATCCTGCTCTTTG-AGGACTG-AAATG
* *** * *
66457 TGCCACCAGCTCGTGTGGGCTTTAAAAGGAAAAGGTGTCCTGCTCTTTGAGGATTGAAAGATGCC
63 TGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAAGATAGAAAGATGCC
* * *
66522 ACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT-C-TTGCT-TTTGAGGACTGAAAG
128 ACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATGCATTGCTCTTTGAGGACTAAAAA
* *
66577 GTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCATCCTGCTGTTTGGGGACTGAAATGTGC
1 GTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAATGTGC
* * *
66642 CACCAACTTGTGTGGGCTTTAAAATGAAAAGACATCCTGCTCTTTGAAGACTAG-AAGGTGCCAC
66 CACCAACTCGTGTGGGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAAGA-TAGAAAGATGCCAC
* **
66706 CAACTTATGTGGGCTTTAAAATGAAAAGGTGTGCATTGCTCTTTGAGGACTAAAAA
130 CAACTTATGTGGGCTTTAAAAGGAAAAGGCATGCATTGCTCTTTGAGGACTAAAAA
* * *
66762 GTGCCACCAACTTGTGTGGGCTTTAAAAGTAAATGGCATCCTGCTCTTTGAGGACT
1 GTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT
66818 AAAAGGTTAA
Statistics
Matches: 205, Mismatches: 29, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
181 5 0.02
182 127 0.62
183 4 0.02
184 5 0.02
185 64 0.31
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (185 bp):
GTGCCACCAACTTGTGTGGGATTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAATGTGC
CACCAACTCGTGTGGGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAAGATAGAAAGATGCCACC
AACTTATGTGGGCTTTAAAAGGAAAAGGCATGCATTGCTCTTTGAGGACTAAAAA
Found at i:67816 original size:8 final size:7
Alignment explanation
Indices: 67795--67870 Score: 52
Period size: 8 Copynumber: 10.6 Consensus size: 7
67785 AAGCAGGTTC
67795 TTTTC-T
1 TTTTCTT
*
67801 TTTCCTT
1 TTTTCTT
67808 TTTTACTT
1 TTTT-CTT
67816 TTTTCTTT
1 TTTTC-TT
67824 TTTTCATT
1 TTTTC-TT
67832 TTTT-TT
1 TTTTCTT
67838 GTTGTTCTT
1 -TT-TTCTT
*
67847 TTTTGTT
1 TTTTCTT
67854 TCTTT-TT
1 T-TTTCTT
67861 TTTT-TT
1 TTTTCTT
67867 TTTT
1 TTTT
67871 TGAAAAAAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
6 15 0.25
7 15 0.25
8 27 0.46
9 2 0.03
ACGTcount: A:0.03, C:0.11, G:0.04, T:0.83
Consensus pattern (7 bp):
TTTTCTT
Found at i:67837 original size:13 final size:12
Alignment explanation
Indices: 67816--67871 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
67806 TTTTTTACTT
67816 TTTTCTTTTTTTC
1 TTTT-TTTTTTTC
* *
67829 ATTTTTTTTGTTG
1 -TTTTTTTTTTTC
67842 TTCTTTTTTGTTTC
1 TT-TTTTTT-TTTC
67856 TTTTTTTTTTT-
1 TTTTTTTTTTTC
67867 TTTTT
1 TTTTT
67872 GAAAAAAAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
11 5 0.14
12 5 0.14
13 18 0.50
14 8 0.22
ACGTcount: A:0.02, C:0.07, G:0.05, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:74103 original size:21 final size:21
Alignment explanation
Indices: 74079--74128 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
74069 GACATTGGGG
*
74079 TCTTGACTTCCTTAATGCTCC
1 TCTTGACCTCCTTAATGCTCC
74100 TCTTGACCTCCTTAATGCTCC
1 TCTTGACCTCCTTAATGCTCC
74121 TCTTGACC
1 TCTTGACC
74129 CAACAACTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.14, C:0.36, G:0.10, T:0.40
Consensus pattern (21 bp):
TCTTGACCTCCTTAATGCTCC
Found at i:80328 original size:79 final size:80
Alignment explanation
Indices: 80236--80926 Score: 841
Period size: 79 Copynumber: 8.8 Consensus size: 80
80226 AAATTTAATA
* * * *
80236 TTTTGGAGATAAAAAT-GGGGTCGGAGTA-CCCCTTCAGAAATAACGGGGTTAGAGTATCCCCAA
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCC-TCAGAAATAACGGGGTTGGAGTATCCCCGA
* * * * *
80299 TGGTGGAAAATCGTTA
65 TTGTGAAAAATTGGTG
* * * * ** * *
80315 TTTTAGAAAT-AAAATCGGGGTTGAAATATCCCCTCAAAAATAACGAAGTTGGAATATCCTCGAT
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
80379 TGTGAAAAATTGGTG
66 TGTGAAAAATTGGTG
* * * *
80394 TTTTGGAAA-CAAAACCGGGGTTGGAGTATCCCTTCAGAAATAACGGGGTTGGAGTATCCCTGAT
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
*
80458 TATGAAAAATTGGTG
66 TGTGAAAAATTGGTG
* * * * *
80473 TTTTGAAAAT-AAAATCAGGGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATTCCCAAT
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
80537 TGTGAAAAATTGGTG
66 TGTGAAAAATTGGTG
*
80552 TTTTGGAAAT-AAAATCGGGGTTGGAGTATCCACTC-GAAAATAACGGGGTTGGAGTATCCCCGA
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCCGA
*
80615 TTGTGAAAAACTGGTG
65 TTGTGAAAAATTGGTG
* * *
80631 TTTTGAAAAT-AAAATCAGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCTCGAT
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
* * *
80695 TGTGAAAAACTAGTA
66 TGTGAAAAATTGGTG
* *
80710 TTTTGGAAAT-AAAATCGGGGTTGGAGTACCCCCTC-GAAAAAAACGGGGTTGGAGTATCCCCGA
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCCGA
80773 TTGTGAAAAATTGGTG
65 TTGTGAAAAATTGGTG
* * * *
80789 TCTTGAAAAT-AAAATCGGGGTTGGAGTATCCTCTCAGAAATAACGGGATTGGAGTATCCCCGAT
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
* * *
80853 TATGAAAAATTAGTA
66 TGTGAAAAATTGGTG
* *
80868 TTTTGGAAAT-AAAACCGAGGTTGGAGTATCCCCTC-GAAAATAACGGGGTTGGAGTATCC
1 TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCC
80927 TTTCGGAAAT
Statistics
Matches: 529, Mismatches: 74, Indels: 18
0.85 0.12 0.03
Matches are distributed among these distances:
78 8 0.02
79 515 0.97
80 6 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (80 bp):
TTTTGGAAATAAAAATCGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
TGTGAAAAATTGGTG
Found at i:84821 original size:31 final size:31
Alignment explanation
Indices: 84786--84848 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
84776 AAGATACATT
* *
84786 TACAAAGCCAACAACAACAAATTCAGATAAG
1 TACAAAGCCAACAACAACAAAATCAAATAAG
*
84817 TACAAAGCCAACAACAATAAAATCAAATAAG
1 TACAAAGCCAACAACAACAAAATCAAATAAG
84848 T
1 T
84849 GCTTATTCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.57, C:0.21, G:0.08, T:0.14
Consensus pattern (31 bp):
TACAAAGCCAACAACAACAAAATCAAATAAG
Found at i:85464 original size:2 final size:2
Alignment explanation
Indices: 85457--85497 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
85447 TTAGCTAAGA
85457 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
85498 CACATACATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91492 original size:2 final size:2
Alignment explanation
Indices: 91485--91517 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
91475 AGTAAGTCTT
91485 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91518 TTTAGCTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:92026 original size:18 final size:17
Alignment explanation
Indices: 91997--92045 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
91987 CCTTTTCTCC
*
91997 AAATACTTAATATAAAA
1 AAATAATTAATATAAAA
92014 AAATTAATTAATAT-AAA
1 AAA-TAATTAATATAAAA
*
92031 AAATAATAAATATAA
1 AAATAATTAATATAA
92046 TTTTAATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 9 0.32
17 10 0.36
18 9 0.32
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAATTAATATAAAA
Found at i:92037 original size:16 final size:16
Alignment explanation
Indices: 91997--92045 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
91987 CCTTTTCTCC
*
91997 AAATACTTAATATAAAA
1 AAATAATTAATAT-AAA
92014 AAATTAATTAATATAAA
1 AAA-TAATTAATATAAA
*
92031 AAATAATAAATATAA
1 AAATAATTAATATAA
92046 TTTTAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 11 0.38
17 9 0.31
18 9 0.31
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATAATTAATATAAA
Found at i:92060 original size:19 final size:18
Alignment explanation
Indices: 92031--92082 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
92021 TTAATATAAA
92031 AAATAATAAATATAATTTT
1 AAAT-ATAAATATAATTTT
*
92050 AATTTATAAATAT-ATTTT
1 AA-ATATAAATATAATTTT
*
92068 AAATATAATTATAAT
1 AAATATAAATATAAT
92083 ATACAAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 8 0.29
18 9 0.32
19 10 0.36
20 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATATAAATATAATTTT
Found at i:95737 original size:22 final size:21
Alignment explanation
Indices: 95703--95758 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
95693 TAAATACAAT
95703 ATATAAAATAATTAAAATATG
1 ATATAAAATAATTAAAATATG
* * *
95724 ATATAACATGAATTACAATATA
1 ATATAAAAT-AATTAAAATATG
*
95746 ATAAAAAAATAAT
1 AT-ATAAAATAAT
95759 ATGTACACGA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 8 0.29
22 15 0.54
23 5 0.18
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (21 bp):
ATATAAAATAATTAAAATATG
Found at i:96062 original size:18 final size:17
Alignment explanation
Indices: 96039--96077 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
96029 ATATTCAAAA
96039 TTTTAAAAAAATTTATAT
1 TTTTAAAAAAA-TTATAT
*
96057 TTTT-AAATAATTATAT
1 TTTTAAAAAAATTATAT
96073 TTTTA
1 TTTTA
96078 TATTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 10 0.53
17 5 0.26
18 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTAAAAAAATTATAT
Found at i:96086 original size:14 final size:15
Alignment explanation
Indices: 96049--96088 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
96039 TTTTAAAAAA
96049 ATTTATATTTTTAAAT
1 ATTTATATTTTT-AAT
*
96065 AATTATATTTTT-AT
1 ATTTATATTTTTAAT
96079 ATTTATATTT
1 ATTTATATTT
96089 AAATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 11 0.50
16 11 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTATATTTTTAAT
Found at i:96095 original size:24 final size:24
Alignment explanation
Indices: 96050--96096 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
96040 TTTAAAAAAA
* *
96050 TTTATATTTTTAAATAATTATATT
1 TTTATATTTATAAATAAATATATT
**
96074 TTTATATTTATATTTAAATATAT
1 TTTATATTTATAAATAAATATAT
96097 ATAAGATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTATATTTATAAATAAATATATT
Found at i:96571 original size:11 final size:11
Alignment explanation
Indices: 96555--96588 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
96545 TCTAAAGCAG
96555 TACATATTATA
1 TACATATTATA
96566 TACATATTATA
1 TACATATTATA
*
96577 TATATA-TATA
1 TACATATTATA
96587 TA
1 TA
96589 TTTTGATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 6 0.27
11 16 0.73
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (11 bp):
TACATATTATA
Found at i:96801 original size:19 final size:18
Alignment explanation
Indices: 96779--96833 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
96769 ATATTAATTT
96779 AATTAAAAAAATTACATAA
1 AATTAAAAAAATTACA-AA
96798 AATTTAAAATCAAATTACAAA
1 AA-TTAAAA--AAATTACAAA
*
96819 AATAAAATAAAATTA
1 AATTAAA-AAAATTA
96834 AAGATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
19 8 0.26
20 10 0.32
21 5 0.16
22 8 0.26
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.27
Consensus pattern (18 bp):
AATTAAAAAAATTACAAA
Found at i:97269 original size:18 final size:19
Alignment explanation
Indices: 97241--97276 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
97231 TAGATTTTTA
97241 TAATATTTTAATATAATTG
1 TAATATTTTAATATAATTG
*
97260 TAAT-TTTTAATTTAATT
1 TAATATTTTAATATAATT
97277 ATTATATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
TAATATTTTAATATAATTG
Found at i:97344 original size:24 final size:24
Alignment explanation
Indices: 97290--97344 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
97280 ATATTATATT
** * * *
97290 TTTAATTTATTTAAATTATAATTG
1 TTTAATTTAAATAAATTAAAAATA
*
97314 TTGAATTTAAATAAATTAAAAATA
1 TTTAATTTAAATAAATTAAAAATA
97338 TTTAATT
1 TTTAATT
97345 ATTTATTTAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTAATTTAAATAAATTAAAAATA
Found at i:97434 original size:27 final size:27
Alignment explanation
Indices: 97379--97434 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
97369 AAGCATTAAA
* *
97379 AATATATTAAAAATAATATTTTATATT
1 AATATAATAAAAATAATAATTTATATT
*
97406 AATATAATAAAAATATTAAATTTAT-TT
1 AATATAATAAAAATAAT-AATTTATATT
97433 AA
1 AA
97435 AATTTTATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (27 bp):
AATATAATAAAAATAATAATTTATATT
Found at i:97480 original size:21 final size:23
Alignment explanation
Indices: 97456--97503 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
97446 CTCAATGAAT
97456 ATAATT-ATATTATT-AAAT-TTA
1 ATAATTAAT-TTATTAAAATATTA
97477 ATAATTAATTTATTAAAATATTA
1 ATAATTAATTTATTAAAATATTA
97500 ATAA
1 ATAA
97504 GATACAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.46
22 6 0.25
23 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
ATAATTAATTTATTAAAATATTA
Found at i:98350 original size:13 final size:14
Alignment explanation
Indices: 98327--98358 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
98317 TAATTAATGT
98327 ATTTATATTATTAA
1 ATTTATATTATTAA
98341 ATTT-TATTATT-A
1 ATTTATATTATTAA
98353 ATTTAT
1 ATTTAT
98359 TAAAATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 5 0.29
13 8 0.47
14 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTATATTATTAA
Found at i:99030 original size:22 final size:22
Alignment explanation
Indices: 99000--99084 Score: 57
Period size: 22 Copynumber: 3.7 Consensus size: 22
98990 TTTATTTTTT
*
99000 TATTTTATAATTATATTTAAAA
1 TATTATATAATTATATTTAAAA
* * *
99022 TATTATATATTTTTATAT-AAA
1 TATTATATAATTATATTTAAAA
* *
99043 TTTTA-ATATATTATTAATTTTAACA
1 TATTATATA-ATTA-T-A-TTTAAAA
99068 TATTTATATAATTATAT
1 TA-TTATATAATTATAT
99085 AATTTTTATA
Statistics
Matches: 46, Mismatches: 10, Indels: 13
0.67 0.14 0.19
Matches are distributed among these distances:
20 3 0.07
21 9 0.20
22 15 0.33
23 2 0.04
24 3 0.07
25 4 0.09
26 7 0.15
27 3 0.07
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (22 bp):
TATTATATAATTATATTTAAAA
Found at i:99092 original size:19 final size:19
Alignment explanation
Indices: 99023--99095 Score: 57
Period size: 19 Copynumber: 3.9 Consensus size: 19
99013 TATTTAAAAT
99023 ATTATAT-ATTTTTATATAA
1 ATTATATAATTTTTATAT-A
*
99042 ATT-T-TAATATATTAT-TA
1 ATTATATAAT-TTTTATATA
* *
99059 ATTTTA-ACATATTTATATA
1 ATTATATA-ATTTTTATATA
99078 ATTATATAATTTTTATAT
1 ATTATATAATTTTTATAT
99096 TATATTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
17 5 0.12
18 10 0.24
19 26 0.62
20 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTATATAATTTTTATATA
Found at i:99118 original size:20 final size:21
Alignment explanation
Indices: 99088--99126 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
99078 ATTATATAAT
*
99088 TTTTATATTATATTTTTATTA
1 TTTTATATTATATATTTATTA
99109 TTTT-TATTATATATTTAT
1 TTTTATATTATATATTTAT
99127 ATAATATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATATTATATATTTATTA
Found at i:99126 original size:8 final size:8
Alignment explanation
Indices: 99067--99129 Score: 55
Period size: 8 Copynumber: 8.4 Consensus size: 8
99057 TAATTTTAAC
99067 ATATTTAT
1 ATATTTAT
*
99075 ATAATTAT
1 ATATTTAT
*
99083 ATAATTTTT
1 AT-ATTTAT
99092 ATA-TTAT
1 ATATTTAT
*
99099 ATTTTTAT
1 ATATTTAT
99107 -TATTT-T
1 ATATTTAT
99113 -TA-TTAT
1 ATATTTAT
99119 ATATTTAT
1 ATATTTAT
99127 ATA
1 ATA
99130 ATATAATTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
5 2 0.05
6 4 0.09
7 11 0.25
8 21 0.48
9 6 0.14
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
ATATTTAT
Found at i:99133 original size:13 final size:12
Alignment explanation
Indices: 99072--99146 Score: 59
Period size: 11 Copynumber: 6.4 Consensus size: 12
99062 TTAACATATT
*
99072 TATATAATTATA
1 TATATATTTATA
*
99084 TA-ATTTTTATA
1 TATATATTTATA
*
99095 T-TATATTTTTA
1 TATATATTTATA
*
99106 T-TATTTTTAT-
1 TATATATTTATA
99116 TATATATTTATA
1 TATATATTTATA
*
99128 TAATATAATTATA
1 T-ATATATTTATA
99141 TCATAT
1 T-ATAT
99147 TTAAAATTAC
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
10 1 0.02
11 31 0.62
12 3 0.06
13 15 0.30
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATTTATA
Found at i:99654 original size:18 final size:18
Alignment explanation
Indices: 99631--99670 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
99621 TAATCGATAT
*
99631 TCAATTTTCATGTGCTCA
1 TCAATTTTCATGTACTCA
99649 TCAATTTTCATGTACTCA
1 TCAATTTTCATGTACTCA
99667 TCAA
1 TCAA
99671 ATTATTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (18 bp):
TCAATTTTCATGTACTCA
Found at i:100769 original size:5 final size:5
Alignment explanation
Indices: 100716--100779 Score: 55
Period size: 5 Copynumber: 13.2 Consensus size: 5
100706 AAATTATTAA
* * *
100716 ATATT AATATA ATA-T ATATT ATATT ATAAT A-ATT ATATT -TAAAT ATATT
1 ATATT -ATATT ATATT ATATT ATATT ATATT ATATT ATATT AT-ATT ATATT
100765 ATATT ATATT -TATT A
1 ATATT ATATT ATATT A
100780 GAAAATAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
4 11 0.23
5 31 0.66
6 5 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (5 bp):
ATATT
Found at i:100778 original size:14 final size:14
Alignment explanation
Indices: 100716--100779 Score: 67
Period size: 14 Copynumber: 4.4 Consensus size: 14
100706 AAATTATTAA
*
100716 ATATTAATATAATAT
1 ATATT-ATATTATAT
100731 ATATTATATTATA-
1 ATATTATATTATAT
*
100744 ATAATTATATTTAAAT
1 AT-ATTATA-TTATAT
100760 ATATTATATTATAT
1 ATATTATATTATAT
*
100774 TTATTA
1 ATATTA
100780 GAAAATAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
13 2 0.05
14 23 0.55
15 15 0.36
16 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATATTATATTATAT
Found at i:101231 original size:14 final size:13
Alignment explanation
Indices: 101207--101253 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
101197 ATTTATCTTA
101207 AAATTCATAAAATT
1 AAATT-ATAAAATT
101221 AAATTAGT-AAATT
1 AAATTA-TAAAATT
*
101234 AAATTTAAAAAATT
1 AAA-TTATAAAATT
101248 AAATTA
1 AAATTA
101254 AAATTAATCG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
13 12 0.41
14 17 0.59
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (13 bp):
AAATTATAAAATT
Found at i:101234 original size:13 final size:13
Alignment explanation
Indices: 101215--101256 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
101205 TAAAATTCAT
*
101215 AAAATTAAATTAG
1 AAAATTAAATTAA
*
101228 TAAATTAAATTTAA
1 AAAATTAAA-TTAA
101242 AAAATTAAATTAA
1 AAAATTAAATTAA
101255 AA
1 AA
101257 TTAATCGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (13 bp):
AAAATTAAATTAA
Found at i:101947 original size:18 final size:18
Alignment explanation
Indices: 101913--101947 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
101903 CACAAAATTA
* *
101913 AATATTTAAAAATAAAAT
1 AATAATTAAAAAAAAAAT
101931 AATAATTAAAAAAAAAA
1 AATAATTAAAAAAAAAA
101948 CCAGATGAGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AATAATTAAAAAAAAAAT
Found at i:105426 original size:13 final size:13
Alignment explanation
Indices: 105408--105433 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105398 ATATTTTTTG
105408 TGTATCGATACAT
1 TGTATCGATACAT
105421 TGTATCGATACAT
1 TGTATCGATACAT
105434 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:105444 original size:32 final size:33
Alignment explanation
Indices: 105387--105451 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
105377 TATAAGCCAA
105387 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
105421 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
105452 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:105445 original size:19 final size:19
Alignment explanation
Indices: 105387--105451 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
105377 TATAAGCCAA
105387 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
105408 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
105421 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
105440 TGTATCGATACA
1 TGTATCGATACA
105452 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:107534 original size:21 final size:20
Alignment explanation
Indices: 107505--107547 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
107495 GAGTAGTGTG
*
107505 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTTGCGACCT
*
107526 GGGAGTGCCGGTTGCGACCT
1 GGGACTGCCGGTTGCGACCT
107546 GG
1 GG
107548 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.26, G:0.44, T:0.21
Consensus pattern (20 bp):
GGGACTGCCGGTTGCGACCT
Found at i:107997 original size:13 final size:13
Alignment explanation
Indices: 107979--108016 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
107969 ATAATCCCCC
107979 TGTATCGATACAG
1 TGTATCGATACAG
* *
107992 TGTATCAATACAT
1 TGTATCGATACAG
108005 TGTATCGATACA
1 TGTATCGATACA
108017 AAGAAAAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:110119 original size:15 final size:15
Alignment explanation
Indices: 110099--110129 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
110089 ATTTCGTTTG
*
110099 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
110114 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
110129 G
1 G
110130 GATATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:111961 original size:21 final size:21
Alignment explanation
Indices: 111932--111976 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
111922 AAGTTTTTAT
*
111932 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
111952 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
111974 TTT
1 TTT
111977 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:114214 original size:13 final size:13
Alignment explanation
Indices: 114196--114221 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114186 ATATTTTTTG
114196 TGTATCGATACAT
1 TGTATCGATACAT
114209 TGTATCGATACAT
1 TGTATCGATACAT
114222 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:114232 original size:32 final size:33
Alignment explanation
Indices: 114175--114239 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
114165 TACAAGCCAA
114175 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
114209 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
114240 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:114233 original size:19 final size:19
Alignment explanation
Indices: 114175--114239 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
114165 TACAAGCCAA
114175 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
114196 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
114209 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
114228 TGTATCGATACA
1 TGTATCGATACA
114240 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:119855 original size:22 final size:24
Alignment explanation
Indices: 119825--119877 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
119815 ATTTTTATAT
* *
119825 TAATCAAAATAATAAA-TTAA-AA
1 TAATAAAAAAAATAAATTTAACAA
119847 TAATAAAAAAAATAAATTTAACAA
1 TAATAAAAAAAATAAATTTAACAA
119871 TAA-AAAA
1 TAATAAAA
119878 TTTATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 14 0.52
23 8 0.30
24 5 0.19
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.25
Consensus pattern (24 bp):
TAATAAAAAAAATAAATTTAACAA
Found at i:120587 original size:78 final size:77
Alignment explanation
Indices: 120497--120650 Score: 204
Period size: 78 Copynumber: 2.0 Consensus size: 77
120487 GATAGGTTGA
* * * *
120497 GAAAGAAATTTTCTTATATTAATTAGGAAAGGTTATCAGATAATTCACTTA-CTTGACTAATCTT
1 GAAAGAAATTTTCTTATATTAATTAGGAAAGGTCATCAGACAACTCACTTATC-TG-CTAACCTT
120561 TTGAT-AGCCACCGC
64 TTGATGA-CCACCGC
* * *
120575 GAAAGAAATTTTCTTGTATTGATTAGGGAAGGTCATCAGACAACTCACTTATCTGCTAACCTTTT
1 GAAAGAAATTTTCTTATATTAATTAGGAAAGGTCATCAGACAACTCACTTATCTGCTAACCTTTT
120640 GATGACCACCG
66 GATGACCACCG
120651 TGAAGTGGCC
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
77 18 0.27
78 48 0.72
79 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (77 bp):
GAAAGAAATTTTCTTATATTAATTAGGAAAGGTCATCAGACAACTCACTTATCTGCTAACCTTTT
GATGACCACCGC
Found at i:123103 original size:15 final size:15
Alignment explanation
Indices: 123083--123153 Score: 65
Period size: 15 Copynumber: 4.7 Consensus size: 15
123073 ATGCCACCTT
123083 TTTTTTTCTTCTTTC
1 TTTTTTTCTTCTTTC
**
123098 TTTTTTGT-TTCCCTC
1 TTTTTT-TCTTCTTTC
*
123113 -TTTTTTGTTCTTTC
1 TTTTTTTCTTCTTTC
*
123127 TTTTTTTCTTTCTTTT
1 TTTTTTTC-TTCTTTC
123143 TTCTTTTTCTT
1 TT-TTTTTCTT
123154 TTCTCTCTCT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
13 1 0.02
14 10 0.22
15 17 0.38
16 11 0.24
17 6 0.13
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTTTCTTCTTTC
Found at i:123135 original size:12 final size:12
Alignment explanation
Indices: 123114--123155 Score: 57
Period size: 13 Copynumber: 3.3 Consensus size: 12
123104 GTTTCCCTCT
123114 TTTTTGTTCTTTC
1 TTTTT-TTCTTTC
123127 TTTTTTTCTTTC
1 TTTTTTTCTTTC
*
123139 TTTTTTCTTTTTC
1 TTTTTT-TCTTTC
123152 TTTT
1 TTTT
123156 CTCTCTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 13 0.48
13 14 0.52
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.83
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:123144 original size:11 final size:11
Alignment explanation
Indices: 123080--123168 Score: 60
Period size: 11 Copynumber: 7.8 Consensus size: 11
123070 CTTATGCCAC
123080 CTTTTTT-TTT
1 CTTTTTTCTTT
*
123090 CTTCTTTCTTT
1 CTTTTTTCTTT
123101 -TTTGTTTCCCTCTT
1 CTTT-TTT--CT-TT
123115 -TTTTGTTCTTT
1 CTTTT-TTCTTT
123126 CTTTTTTTCTTT
1 C-TTTTTTCTTT
123138 CTTTTTTCTTT
1 CTTTTTTCTTT
*
123149 -TTCTTTTCTCT
1 CTT-TTTTCTTT
*
123160 CTCTTTTCT
1 CTTTTTTCT
123169 AGTTTAAAGT
Statistics
Matches: 65, Mismatches: 4, Indels: 19
0.74 0.05 0.22
Matches are distributed among these distances:
10 10 0.15
11 31 0.48
12 10 0.15
13 7 0.11
14 7 0.11
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.76
Consensus pattern (11 bp):
CTTTTTTCTTT
Found at i:123152 original size:29 final size:29
Alignment explanation
Indices: 123079--123154 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 29
123069 TCTTATGCCA
123079 CCTTTTTTTTTCTTCTTTCTTTTTTGTTTC
1 CCTTTTTTTTT-TTCTTTCTTTTTTGTTTC
* *
123109 CCTCTTTTTTGTTCTTTCTTTTTT-TCTT-
1 CCTTTTTTTTTTTCTTTCTTTTTTGT-TTC
*
123137 TCTTTTTTCTTTTTCTTT
1 CCTTTTTT-TTTTTCTTT
123155 TCTCTCTCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 7 0.18
29 23 0.59
30 9 0.23
ACGTcount: A:0.00, C:0.20, G:0.03, T:0.78
Consensus pattern (29 bp):
CCTTTTTTTTTTTCTTTCTTTTTTGTTTC
Found at i:124135 original size:56 final size:56
Alignment explanation
Indices: 124065--124184 Score: 136
Period size: 56 Copynumber: 2.1 Consensus size: 56
124055 TGTTAGCTAT
* * * * * *
124065 TGTGGGTTTTAACTTAGTTTCTAGCTAATGT-AGACTTTGACCT-AAGTGTCAACTAA
1 TGTGGGCTCTAACTTAGGTGCTAGCTAATGTGA-ACTTGGA-CTAAAGTGCCAACTAA
* *
124121 TGTGGGCTCTAACTTAGGTGCTAGCTAGTGTGAACTTGGACTAAAGTGCCAACTAG
1 TGTGGGCTCTAACTTAGGTGCTAGCTAATGTGAACTTGGACTAAAGTGCCAACTAA
124177 TGTGGGCT
1 TGTGGGCT
124185 TGGACTAAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
55 2 0.04
56 51 0.94
57 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (56 bp):
TGTGGGCTCTAACTTAGGTGCTAGCTAATGTGAACTTGGACTAAAGTGCCAACTAA
Found at i:124228 original size:28 final size:28
Alignment explanation
Indices: 124166--124435 Score: 179
Period size: 28 Copynumber: 9.7 Consensus size: 28
124156 TTGGACTAAA
* * * *
124166 GTGCCAACTAGTGTGGGCTTGGACTAAG
1 GTGCCAACTAATGTGGGCTTCGACTCAT
* * *
124194 GTACCAACTAGTATGGGCTTCGACTCAT
1 GTGCCAACTAATGTGGGCTTCGACTCAT
** * *
124222 GTGCCAACTAATGTGGG-TTTTAATGCAA
1 GTGCCAACTAATGTGGGCTTCGACT-CAT
* * **
124250 ATGCCAACTAATTTGGGCTTCGACTTGT
1 GTGCCAACTAATGTGGGCTTCGACTCAT
* * * * *
124278 GTGCCAGCTAGT-TAGGGCAT--ACTTAG
1 GTGCCAACTAATGT-GGGCTTCGACTCAT
* * * * *
124304 GTGCCAGCTAGTGTGGGCTTAGACTTAA
1 GTGCCAACTAATGTGGGCTTCGACTCAT
* ** *
124332 ATGCCAGTTAATGTGGGCTTCGATTCAT
1 GTGCCAACTAATGTGGGCTTCGACTCAT
* *
124360 GTGCCAACTAATGTGGGCTTTGATTCAT
1 GTGCCAACTAATGTGGGCTTCGACTCAT
* *
124388 GTGCCAACTAATGTGGGCTTAGACTCGT
1 GTGCCAACTAATGTGGGCTTCGACTCAT
**
124416 GTGCCAGTTAATGTGGGCTT
1 GTGCCAACTAATGTGGGCTT
124436 ACATAGGTGC
Statistics
Matches: 192, Mismatches: 44, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
26 21 0.11
27 6 0.03
28 161 0.84
29 4 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (28 bp):
GTGCCAACTAATGTGGGCTTCGACTCAT
Found at i:124436 original size:28 final size:28
Alignment explanation
Indices: 124117--124436 Score: 157
Period size: 28 Copynumber: 11.5 Consensus size: 28
124107 TAAGTGTCAA
* * *
124117 CTAATGTGGGCTCTA-ACTTAGGTGCTAG
1 CTAATGTGGGCT-TAGACTCATGTGCCAG
* ** * * * *
124145 CTAGTGTGAACTTGGACTAAAGTGCCAA
1 CTAATGTGGGCTTAGACTCATGTGCCAG
* * * * * *
124173 CTAGTGTGGGCTTGGACTAAGGTACCAA
1 CTAATGTGGGCTTAGACTCATGTGCCAG
* * * *
124201 CTAGTATGGGCTTCGACTCATGTGCCAA
1 CTAATGTGGGCTTAGACTCATGTGCCAG
* ** *
124229 CTAATGTGGGTTTTA-A-TGCAAATGCCAA
1 CTAATGTGGG-CTTAGACT-CATGTGCCAG
* * **
124257 CTAATTTGGGCTTCGACTTGTGTGCCAG
1 CTAATGTGGGCTTAGACTCATGTGCCAG
* * * *
124285 CTAGT-TAGGGC--ATACTTAGGTGCCAG
1 CTAATGT-GGGCTTAGACTCATGTGCCAG
* * **
124311 CTAGTGTGGGCTTAGACTTAAATGCCAG
1 CTAATGTGGGCTTAGACTCATGTGCCAG
* * * *
124339 TTAATGTGGGCTTCGATTCATGTGCCAA
1 CTAATGTGGGCTTAGACTCATGTGCCAG
* * *
124367 CTAATGTGGGCTTTGATTCATGTGCCAA
1 CTAATGTGGGCTTAGACTCATGTGCCAG
*
124395 CTAATGTGGGCTTAGACTCGTGTGCCAG
1 CTAATGTGGGCTTAGACTCATGTGCCAG
*
124423 TTAATGTGGGCTTA
1 CTAATGTGGGCTTA
124437 CATAGGTGCT
Statistics
Matches: 229, Mismatches: 54, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
26 20 0.09
27 6 0.03
28 200 0.87
29 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (28 bp):
CTAATGTGGGCTTAGACTCATGTGCCAG
Found at i:124574 original size:138 final size:138
Alignment explanation
Indices: 124207--124575 Score: 418
Period size: 138 Copynumber: 2.7 Consensus size: 138
124197 CCAACTAGTA
* * * *
124207 TGGGCTTCGACTCATGTGCCAACTAATGTGGGTTTTAATGCAAATGCCAACTAATTTGGGCTTCG
1 TGGGCTTCGATTCATGTGCCAACTAATGTGGGTTTTAATGTAAATGCCAACTAATGTGGGCTTAG
* * * * *
124272 ACTTGTGTGCCAGCTAGT-TAGGGCATACTTAGGTGCCAGCTAGTGTGGGCTTAGACTTAAATGC
66 ACTTGTGTGCCAGCTAATGT-GGGCTTACATAGGTGCCAGCCAGTATGGGCTTAGACTTAAATGC
*
124336 CAGTTAATG
130 CAGCTAATG
* * **
124345 TGGGCTTCGATTCATGTGCCAACTAATGTGGGCTTTGAT-TCATGTGCCAACTAATGTGGGCTTA
1 TGGGCTTCGATTCATGTGCCAACTAATGTGGGTTTTAATGT-AAATGCCAACTAATGTGGGCTTA
* * * *
124409 GACTCGTGTGCCAGTTAATGTGGGCTTACATAGGTGCTAGCCAGTATGGGCTTAGACTTAGATGC
65 GACTTGTGTGCCAGCTAATGTGGGCTTACATAGGTGCCAGCCAGTATGGGCTTAGACTTAAATGC
*
124474 TAGCTAATG
130 CAGCTAATG
* * * * * * * * *
124483 TTGGTTTTGATTCATGTGCCAACTGATATGGGTTTTAATGTGAATGCCAATTAATGGGGGCTTTG
1 TGGGCTTCGATTCATGTGCCAACTAATGTGGGTTTTAATGTAAATGCCAACTAATGTGGGCTTAG
** * *
124548 GTTTGGGTGCCAGCTAATGTGAGCTTAC
66 ACTTGTGTGCCAGCTAATGTGGGCTTAC
124576 TTTTGATAAG
Statistics
Matches: 190, Mismatches: 38, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
138 188 0.99
139 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (138 bp):
TGGGCTTCGATTCATGTGCCAACTAATGTGGGTTTTAATGTAAATGCCAACTAATGTGGGCTTAG
ACTTGTGTGCCAGCTAATGTGGGCTTACATAGGTGCCAGCCAGTATGGGCTTAGACTTAAATGCC
AGCTAATG
Found at i:130678 original size:19 final size:20
Alignment explanation
Indices: 130654--130709 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 20
130644 AAAAAAGAAA
130654 GAATGTATCGATACATT-AT
1 GAATGTATCGATACATTCAT
*
130673 GAATGTATCGATACATTCTT
1 GAATGTATCGATACATTCAT
*
130693 CAATGTATCGATACATT
1 GAATGTATCGATACATT
130710 TGGGTAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (20 bp):
GAATGTATCGATACATTCAT
Found at i:130699 original size:20 final size:19
Alignment explanation
Indices: 130655--130709 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
130645 AAAAAGAAAG
*
130655 AATGTATCGATACATTATG
1 AATGTATCGATACATTATC
*
130674 AATGTATCGATACATTCTTC
1 AATGTATCGATACATT-ATC
130694 AATGTATCGATACATT
1 AATGTATCGATACATT
130710 TGGGTAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.38
Consensus pattern (19 bp):
AATGTATCGATACATTATC
Found at i:130732 original size:31 final size:30
Alignment explanation
Indices: 130694--130811 Score: 92
Period size: 31 Copynumber: 3.5 Consensus size: 30
130684 TACATTCTTC
130694 AATGTATCGATACATTTGGGTAAAAAGACAG
1 AATGTATCGATACATTTGGGTAAAAAGA-AG
** *
130725 AATGTATCGATACATTCATACATGTATCAATACATTGAAA
1 AATGTATCGATACATT--T--GGGTA--AA-A-A--GAAG
*
130765 AATGTATCAATACATTTGGGTAAAAAGATAG
1 AATGTATCGATACATTTGGGTAAAAAGA-AG
130796 AATGTATCGATACATT
1 AATGTATCGATACATT
130812 CATACATGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 22
0.69 0.08 0.22
Matches are distributed among these distances:
30 2 0.03
31 32 0.47
32 1 0.01
33 2 0.03
34 2 0.03
35 3 0.04
36 3 0.04
37 2 0.03
38 2 0.03
39 1 0.01
40 16 0.24
41 2 0.03
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.31
Consensus pattern (30 bp):
AATGTATCGATACATTTGGGTAAAAAGAAG
Found at i:130751 original size:20 final size:20
Alignment explanation
Indices: 130725--130780 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
130715 AAAAAGACAG
* *
130725 AATGTATCGATACATTCATA
1 AATGTATCAATACATTCAAA
* *
130745 CATGTATCAATACATTGAAA
1 AATGTATCAATACATTCAAA
130765 AATGTATCAATACATT
1 AATGTATCAATACATT
130781 TGGGTAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (20 bp):
AATGTATCAATACATTCAAA
Found at i:130769 original size:71 final size:71
Alignment explanation
Indices: 130605--130861 Score: 392
Period size: 71 Copynumber: 3.6 Consensus size: 71
130595 TTTCAACTAG
*
130605 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAGAAAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGAAAGAATGTATCGATACAT
130670 T-ATGA-
66 TCAT-AC
**** * *
130675 ATGTATCGATACATTCTTCAATGTATCGATACATTTGGGTAAAAAGACAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGAAAGAATGTATCGATACAT
130740 TCATAC
66 TCATAC
* * * *
130746 ATGTATCAATACATTGAAAAATGTATCAATACATTTGGGTAAAAAGATAGAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGAAAGAATGTATCGATACAT
130811 TCATAC
66 TCATAC
130817 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
130862 TGTGACTTTT
Statistics
Matches: 168, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
70 60 0.36
71 108 0.64
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (71 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGAAAGAATGTATCGATACAT
TCATAC
Found at i:130822 original size:20 final size:20
Alignment explanation
Indices: 130796--130850 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
130786 AAAAAGATAG
*
130796 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
130816 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
130836 AATGTATCGATACAT
1 AATGTATCGATACAT
130851 CTGGGTAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Done.