Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2614
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 28700
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Found at i:1383 original size:22 final size:22
Alignment explanation
Indices: 1351--1406 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
1341 GTAACAGAGC
*
1351 AATCGAGTTTAACATTTGAATT
1 AATCGAGTTTAACATTCGAATT
* * *
1373 AATTGAGTTTAATATTCGGATT
1 AATCGAGTTTAACATTCGAATT
1395 AATCGAGTTTAA
1 AATCGAGTTTAA
1407 GTTATTATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (22 bp):
AATCGAGTTTAACATTCGAATT
Found at i:5052 original size:20 final size:20
Alignment explanation
Indices: 5027--5242 Score: 135
Period size: 20 Copynumber: 9.7 Consensus size: 20
5017 ATTTAACTAG
5027 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
5047 ATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACA-TT-G------A-A-A-A
* *
5078 ATGTAACGATACATTGAATA
1 ATGTATCGATACATTGAAAA
* * *
5098 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
*
5118 ATGTATTGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
5138 ATGTATCGATACATCTGGGTAAAAAAATAAA
1 ATGTATCGATACAT-T--G-------A-AAA
*
5169 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
5189 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
5209 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
5229 CTGTATCGATACAT
1 ATGTATCGATACAT
5243 CTGGGTAAAA
Statistics
Matches: 153, Mismatches: 21, Indels: 44
0.70 0.10 0.20
Matches are distributed among these distances:
20 106 0.69
21 4 0.03
22 2 0.01
23 2 0.01
28 2 0.01
29 2 0.01
30 5 0.03
31 30 0.20
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:5088 original size:51 final size:48
Alignment explanation
Indices: 5027--5203 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 48
5017 ATTTAACTAG
5027 ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATTTGG-AAAAAA-ATA-A
* * * *
5078 ATGTAACGATACATTGAATAATGTATCGATACA-TT-------CATAC
1 ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAATAA
* *
5118 ATGTATTGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAATAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGG-AAAAAAAT-AA
*
5169 ATGTATCGATACATTGAAGAATGTATCGATACATT
1 ATGTATCGATACATTGAAAAATGTATCGATACATT
5204 CATACATGTA
Statistics
Matches: 103, Mismatches: 12, Indels: 23
0.75 0.09 0.17
Matches are distributed among these distances:
40 30 0.29
41 3 0.03
42 1 0.01
50 5 0.05
51 64 0.62
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.31
Consensus pattern (48 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAATAA
Found at i:5182 original size:91 final size:92
Alignment explanation
Indices: 5027--5253 Score: 377
Period size: 91 Copynumber: 2.5 Consensus size: 92
5017 ATTTAACTAG
* * *
5027 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGGAAAAAAAGATAGAATGTAACGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGATAAAATGTAACGATACA
*
5091 TTGAATAATGTATCGATACATTCATAC
66 TTGAAGAATGTATCGATACATTCATAC
* *
5118 ATGTATTGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAA-ATAAAATGTATCGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGATAAAATGTAACGATACA
5182 TTGAAGAATGTATCGATACATTCATAC
66 TTGAAGAATGTATCGATACATTCATAC
*
5209 ATGTATCGATACATTGAAAACTGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
5254 TGTGACTTTT
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
91 118 0.93
92 9 0.07
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (92 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGATAAAATGTAACGATACA
TTGAAGAATGTATCGATACATTCATAC
Found at i:5997 original size:47 final size:46
Alignment explanation
Indices: 5946--6145 Score: 201
Period size: 48 Copynumber: 4.3 Consensus size: 46
5936 CAATGTGCCA
* **
5946 ATTCAAGGCCAACGACATCGAGCTAGGGAAAAGTTTACAATGTGATG
1 ATTCAAGGCCAGCGACAT-GAGCTAGGGAAAAGTGGACAATGTGATG
*
5993 ATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGACAATGTGCTG
1 ATTCAAGGCCAGCGACA-TGAGCT-AGGGAAAAGTGGACAATGTGATG
* *
6041 ATTCAAGGCCAGCGACATGAGCTA---ATAAGGTGGACAATGTGCTG
1 ATTCAAGGCCAGCGACATGAGCTAGGGA-AAAGTGGACAATGTGATG
* ** * * * *
6085 ATTCAAGGCTAGCGACATTGAGCTA-ATAAAGGTGGCCAATATGCTG
1 ATTCAAGGCCAGCGACA-TGAGCTAGGGAAAAGTGGACAATGTGATG
*
6131 ATTCAATGCCAGCGA
1 ATTCAAGGCCAGCGA
6146 TATCGACTTT
Statistics
Matches: 137, Mismatches: 10, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.01
44 33 0.24
45 7 0.05
46 30 0.22
47 28 0.20
48 38 0.28
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (46 bp):
ATTCAAGGCCAGCGACATGAGCTAGGGAAAAGTGGACAATGTGATG
Found at i:6043 original size:48 final size:46
Alignment explanation
Indices: 5936--6145 Score: 235
Period size: 47 Copynumber: 4.5 Consensus size: 46
5926 AGAAGAGTGC
** * * * **
5936 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAGGGAAAAGTTTA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTA-AGAAAAGTGGA
*
5983 CAATGTGATGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA--GAAAAGTGGA
* *
6031 CAATGTGCTGATTCAAGGCCAGCGACA-TGAGCTAA-TAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGAAAAGTGGA
* * * *
6075 CAATGTGCTGATTCAAGGCTAGCGACATTGAGCTAATAAAGGTGGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGAAAAGTGGA
* *
6121 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
6146 TATCGACTTT
Statistics
Matches: 142, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
44 33 0.23
45 8 0.06
46 29 0.20
47 38 0.27
48 34 0.24
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (46 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGAAAAGTGGA
Found at i:6057 original size:25 final size:24
Alignment explanation
Indices: 6029--6101 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 24
6019 GGGAAAAGTG
6029 GACAATGTGCTGATTCAAGGCCAGC
1 GACAATGTGCTGATTCAAGG-CAGC
* * *
6054 GAC-ATGAGCT-AAT-AAGG-TG-
1 GACAATGTGCTGATTCAAGGCAGC
6073 GACAATGTGCTGATTCAAGGCTAGC
1 GACAATGTGCTGATTCAAGGC-AGC
6098 GACA
1 GACA
6102 TTGAGCTAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
19 3 0.08
20 7 0.19
21 2 0.06
22 8 0.22
23 2 0.06
24 7 0.19
25 7 0.19
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.21
Consensus pattern (24 bp):
GACAATGTGCTGATTCAAGGCAGC
Found at i:6089 original size:44 final size:45
Alignment explanation
Indices: 5982--6145 Score: 222
Period size: 44 Copynumber: 3.6 Consensus size: 45
5972 GGAAAAGTTT
* * *
5982 ACAATGTGATGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGG
1 ACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA---TAAGGTGG
6030 ACAATGTGCTGATTCAAGGCCAGCGACA-TGAGCTAATAAGGTGG
1 ACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAATAAGGTGG
*
6074 ACAATGTGCTGATTCAAGGCTAGCGACATTGAGCTAATAAAGGTGG
1 ACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAT-AAGGTGG
* * *
6120 CCAATATGCTGATTCAATGCCAGCGA
1 ACAATGTGCTGATTCAAGGCCAGCGA
6146 TATCGACTTT
Statistics
Matches: 106, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
44 33 0.31
45 9 0.08
46 29 0.27
47 8 0.08
48 27 0.25
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (45 bp):
ACAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAATAAGGTGG
Found at i:6313 original size:28 final size:28
Alignment explanation
Indices: 6257--10085 Score: 3997
Period size: 28 Copynumber: 136.0 Consensus size: 28
6247 CACCGACTTG
*
6257 TGTGGGCTTTAAAAGGGGATGCCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACT
* * * *
6287 TATGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
6315 TGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
6342 TATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
6370 TGTGTAGGCTTTGAAATGGTATGCCATTGACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACT
* *
6402 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
6430 TGT-GGCTTTGAAAGGATGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
6457 T-TTGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
6484 TATGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** * *
6512 TGTGGGCTTTGAAAATATGCCACTAACA
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
6540 TGTGGGCTTTAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
6568 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
6597 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
6626 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
6654 TGTAGGCTTTGAAATG-TGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
**
6681 TGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
6709 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
6738 TGTGAGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
6766 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
6794 TATGGGCATTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
6822 TGTGGCCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
6850 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
6878 TGT-GGCTTTGAAAGGGTGTTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
6905 TGTGGGCTTTAAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
6933 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
6961 TGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
6988 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
7017 TGTGGTCTTTCG-AAGAGATGTCACTAACT
1 TGTGGGCTTT-GAAAG-GATGCCACTGACT
*
7046 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7074 TGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7101 TGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
7129 T-TTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGC--TTTGAAAG-GATGCCACT-GACT
*
7158 TGTGGGCTTTGAAAGGATGCCACTCACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7186 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
7214 TGTGGGCTTTGAAAGCATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7242 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7270 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
7298 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
7327 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
7356 TGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
7384 TGTGGGCTTTGAAAGGGTGCCATTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7412 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* **
7440 TATGAGTTTTTG-AAGAGATGCCACTGACT
1 TGTG-GGCTTTGAAAG-GATGCCACTGACT
* * *
7469 TGTGGGCTTTGAAAAGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
7497 TGTGCGCTTTGTAATGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7525 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7553 TGTGGGCTTTGAAAGGGTGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
7581 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
7609 TGTGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7637 TATGAGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* * *
7665 TGTGGGTTTTGAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7693 TATGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
** * *
7722 TGTGTTCTTTTG-AAGAGATGCCACTAACC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
7751 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7779 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
7807 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
**
7835 TGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
7863 TATGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
7892 TGTAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7920 TGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
7948 TGT-GGTTTTCGAAAAGATGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
7976 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
8004 TGTGGTCTTCAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
8032 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
8060 TGTGGGCTTTCATA-GAGTGCTACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
8088 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
8116 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
8144 TGTGGACTTTGAAAGAATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
8172 TGTGGGCTTTGAAAGGGTGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
8200 TATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
8228 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
8256 TATGGGATTTAAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
8284 TGTGGGCCTTAGAAA-AATGCCACTAACT
1 TGTGGG-CTTTGAAAGGATGCCACTGACT
* * *
8312 TGTGAGCTTTTG-AAGAGATGCAACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
8341 TGTAGGCTTTCAAAGGATGCTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
8369 TGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
*
8397 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
8425 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
8454 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
8482 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
8510 TATGGGCATTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
*
8538 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
8566 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *** *
8594 TGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
8622 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
8650 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
8678 TGTGGGCTTTGAAAAGTTGCCAGT-ACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
8705 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
8734 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
8763 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
8791 TGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
8818 TGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
8846 TGTGGG-TTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
8874 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
8903 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
8931 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
8959 TGTGGGCTTTGAAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
8987 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9015 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9043 TGTGGTCTTTTG-AAGAGATACCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
9072 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * *
9101 TGTGTGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
9129 TATGGGTTTTGAAAGGGTGCCACTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9157 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9185 TGTGGGCTTTTGAAAAGATGCCATTGACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
** * * *
9214 TGTTTGCTTTGAAAAGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9242 TGTGGGCTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
9270 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9298 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9326 TGTGGGCGTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9354 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
9382 TGTGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
9410 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9438 TAG-GGTCTTTTG-AAGAGATGCCACTGACT
1 T-GTGGGC-TTTGAAAG-GATGCCACTGACT
** *
9467 TGTGTTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
9496 TGTGTGATTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
9524 TGTGGGCTTTAAAAGGGTGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9552 TGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
9580 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
9609 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
9638 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
9666 TGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9694 TGT-GGTTTTCGAAAAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
9722 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9750 TGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
9778 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9806 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
9834 TGTGGGCTTCGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9862 TGTGGGCTTTGAAAGGGTGCCACT-ACCT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
* * * *
9890 TGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
9918 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
9946 TGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
9974 TGTGGGCTTTGGAAA-AATGGCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
*
10002 TGTGAGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
10031 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
10059 TGTGGGCTTTGAAAGGGTGCTACTGAC
1 TGTGGGCTTTGAAAGGATGCCACTGAC
10086 ATGCCACTAA
Statistics
Matches: 3237, Mismatches: 471, Indels: 184
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.00
27 234 0.07
28 2307 0.71
29 642 0.20
30 37 0.01
31 2 0.00
32 14 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:6532 original size:56 final size:56
Alignment explanation
Indices: 6257--11397 Score: 5403
Period size: 56 Copynumber: 90.8 Consensus size: 56
6247 CACCGACTTG
* * ** * * *
6257 TGTGGGCTTTAAAAGGGGATGCCACTGACTTATGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * * * * *
6315 TGTAGGCTTT-AAAGGGTGCCACTGACTTATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
6370 TGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* *
6430 TGT-GGCTTTGAAAGGATGCCGCTGACTT-TTGGCTTTG-AAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAG-ATGCCACTAACT
* * * *
6484 TATGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAATATGCCACTAACA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
6540 TGTGGGCTTTAAAAAGATGCCACTGACTTGTGGTCTTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
* *
6597 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
6654 TGTAGGCTTTGAAATG-TGGCACTGACTTGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
6709 TGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGCTTTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
6766 TATGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTGAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
6822 TGTGGCCTTTGAAAAGATGCCACTGACTTGTGGGCTTT-AAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTAACT
* ** * *
6878 TGT-GGCTTTGAAAGGGTGTTACTAACTTGTGGGCTTTAAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
6933 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
6988 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTCGAAGAGATGTCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTT-GAAAAGATGCCACTAACT
* * * * * *
7046 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-TTTTAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
7101 TGTGGGCTTTGAAAAGATGCCATTGACTT-TTGGCTTTTTGAAGAGATGCCA-TAGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC--TTTGAAAAGATGCCACTA-ACT
* * *
7158 TGTGGGCTTTGAAAGGATGCCACTCACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
*
7214 TGTGGGCTTTGAAAGCATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
7270 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
* * * *
7327 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGGGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * *
7384 TGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* ** *
7440 TATGAGTTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTAACT
1 TGTG-GGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * * *
7497 TGTGCGCTTTGTAATGATACCACTGACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
7553 TGTGGGCTTTGAAAGGGTGTCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * * * *
7609 TGTGGGCTTTGAAAAGAAGCCATTAACTTATGAGCTTTGATAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * *
7665 TGTGGGTTTTGAAAGGATACCACTAACTTATGGTCTTTTGAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
** * * * *
7722 TGTGTTCTTTTG-AAGAGATGCCACTAACCTGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
7779 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTAACT
** * * *
7835 TGTGGGCTTTGAAAATATGCCACTGACTTATGGGCTTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
* * * * *
7892 TGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
7948 TGT-GGTTTTCGAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* ** * *
8004 TGTGGTCTTCAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
8060 TGTGGGCTTTCATA-GAGTGCTACTAACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
8116 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTG-AAAGAATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAG-ATGCCACTAACT
* * * * *
8172 TGTGGGCTTTGAAAGGGTGCCACTTACTTATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
8228 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATTT-AAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTAACT
* * * * * *
8284 TGTGGGCCTTAGAAA-AATGCCACTAACTTGTGAGCTTTTGAAGAGATGCAACTAACT
1 TGTGGG-CTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
* * * * * * *
8341 TGTAGGCTTTCAAAGGATGCTACTAACTTGTAGGCTTTGAAAAGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
8397 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
* *
8454 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
8510 TATGGGCATTGAAAAGG-TACCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * ***
8566 TGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
8622 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
8678 TGTGGGCTTTGAAAAGTTGCCAGT-ACTTGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA-AGATGCCACTAACT
* *
8734 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * * *
8791 TGTAGGCTTT-AAAGGGTGTCACTGACTTGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * *
8846 TGTGGG-TTTTAAAGAGATGCCATTGACTTGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAA-AGATGCCACTAACT
* *
8903 TGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* *
8959 TGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * *
9015 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTGAAGAGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
* * * * *
9072 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGTGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * * *
9129 TATGGGTTTTGAAAGGGTGCCACTCATTTATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * ** *
9185 TGTGGGCTTTTGAAAAGATGCCATTGACTTGTTTGCTTTGAAAAGATGCCACTAACC
1 TGTGGGC-TTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
9242 TGTGGGCTTTGAAAGGATACCACTGACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
9298 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCGTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
9354 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGATAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
9410 TGTGGGCTTTGAAAGGATGCCACTGACTTAG-GGTCTTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTT-GTGGGC-TTTGAAAAGATGCCACTAACT
** * * * *
9467 TGTGTTCTTTTG-AAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
9524 TGTGGGCTTTAAAAGGGTGCCGCTGACTTGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* *
9580 TGTGGGCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
* * * *
9638 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
9694 TGT-GGTTTTCGAAAAGATGCCACTGACTTGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* *
9750 TGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
9806 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTCGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
9862 TGTGGGCTTTGAAAGGGTGCCACT-ACCTTGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
9918 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTT-AAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTAACT
* * * * * *
9974 TGTGGGCTTTGGAAA-AATGGCACTAACTTGTGAGCTTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
*
10031 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA-------A--G--ATGCCACTAA
10096 CT
55 CT
* *
10098 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
10154 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * * *
10209 TGTGGGCTTTGAAAAGATTCCATTGACTTGTGGGTTTTTGAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CTTTGAAAAGATGCCACTAACT
* * * *
10266 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * *
10322 TGTGGAG-TTTGAAAAGAAGCCATTAACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGG-GCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
10378 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGAGCTTTGGAAAA-ATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAAGATGCCACTAACT
* * * *
10434 TGTGAGCTTTTG-AAGATATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* *
10491 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTG-AAAGAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAAGA-TGCCACTA
10555 ACT
54 ACT
* * *
10558 TGTGGGCTTTGAAAAGATGTCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
10614 TGTAGGCTTT-AAAGGGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
10669 TGTGGGTTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
10726 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * * * *
10782 TGTGGGCTTTGAAAGGATGCCAGTAATTTGTGGGCTTT-AAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTAACT
* * * * *
10838 TGTGGGCTTTGGAAA-AATGCCACTAACTTGTGAGCTTTTGAAGAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAAGATGCCACTAACT
10895 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA-------A--G--ATGCCACTAA
10960 CT
55 CT
* * * *
10962 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAGGACGCCACTGATT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
11018 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTAGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * *
11074 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTTT-AAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACTAACT
* *
11130 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* *
11186 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * *
11242 TGTGGGCTTTGAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGATGCCACCAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
* * * * *
11298 TGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGTCTTTGAAAAGGTGTCC-CTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATG-CCACTAACT
* ** * *
11354 TGTGGTCTTTGAAAGGATGCCTTTGACTTGTGGTCTTTAAAAAG
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAG
11398 GGCTGCCACG
Statistics
Matches: 4291, Mismatches: 641, Indels: 304
0.82 0.12 0.06
Matches are distributed among these distances:
53 3 0.00
54 27 0.01
55 408 0.10
56 2461 0.57
57 992 0.23
58 201 0.05
59 2 0.00
60 37 0.01
61 1 0.00
63 2 0.00
65 2 0.00
66 8 0.00
67 147 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (56 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACT
Found at i:6721 original size:84 final size:84
Alignment explanation
Indices: 6257--11374 Score: 5389
Period size: 84 Copynumber: 60.2 Consensus size: 84
6247 CACCGACTTG
* * * * * *
6257 TGTGGGCTTT-AAAAGGGGATGCCACTGACTTATGGGCTTTGAAGGGGTACCACTGACTTGTAGG
1 TGTGGGCTTTGAAAA---GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
*
6321 CTTT-AAAGGGTGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
* * * * * * * *
6342 TATGGGCTTTGGAAGGGTGCCATTGATTTGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGG
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGG
* *
6407 GCTTTGAAAGGGTGCCACTAACT
62 GCTTTGAAAGGATGCCACTGACT
* * * * * * *
6430 TGT-GGCTTTGAAAGGATGCCGCTGACTT-TTGGCTTTGAAAGAATGCCACTAACTTATGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
6493 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
6512 TGTGGGCTTTGAAAATATGCCACTAACATGTGGGCTTTAAAAAGATGCCACTGACTTGTGGTCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-T
6577 TTG-AAGAGATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
* * * * *
6597 TGTGGTCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
6662 TTGAAATG-TGGCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *
6681 TGTGGGCTTTGAAAATATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGC
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
*
6745 TTTGAAAAGATGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * * * *
6766 TATGGGCTTTGAAAGGATGCCACTAACTTATGGGCATTGAAAAGG-TGCCACTAACTTGTGGCCT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCT
*
6830 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * ** *
6850 TGTGGGCTTT-AAAAGGATACCACTAACTTGT-GGCTTTGAAAGGGTGTTACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* * *
6913 TTAAAAAGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * * * *
6933 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
6997 TTAAAGAGATGCCACTAACT
66 TGAAAG-GATGCCACTGACT
* * * * *
7017 TGTGGTCTTTCGAAGAGATGTCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGG-T
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
7081 TTTAAAGGGTGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
7101 TGTGGGCTTTGAAAAGATGCCATTGACTT-TTGGCTTTTTG-AAGAGATGCCA-TAGACTTGTGG
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC--TTTGAAAG-GATGCCACT-GACTTGTGG
*
7163 GCTTTGAAAGGATGCCACTCACT
62 GCTTTGAAAGGATGCCACTGACT
* * *
7186 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGCATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
7251 TGAAAAGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * *
7270 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGTC
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
*
7334 TTTTG-AAGAGATGCCACTAACT
64 -TTTGAAAG-GATGCCACTGACT
* * * * * * *
7356 TGTGGGTTTTGAAAAGATGTCACTAACTTGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
7421 TGAAAAGATGCCACTGACT
66 TGAAAGGATGCCACTGACT
* ** * * * * * *
7440 TATGAGTTTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAAGTTGCCACTAACTTGTGCGCT
1 TGTG-GGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* * *
7505 TTGTAATGATACCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
7525 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGTCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
7590 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * *
7609 TGTGGGCTTTGAAAAGAAGCCATTAACTTATGAGCTTTGATAA-GATGCCACTGACTTGTGGGTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCT
* *
7673 TTGAAAGGATACCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * ** * *
7693 TATGGTCTTTTGAAGAGATGCCACTAACTTGTGTTCTTTTG-AAGAGATGCCACTAACCTGTGGG
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
* *
7757 TTTTGAAAGGATGCCACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * *
7779 TGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
**
7843 TTGAAAATATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
7863 TATGGGCTTTTGAAGAGATGCCACTGACTTGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGCT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
7928 TTGAAAGGGTGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
7948 TGT-GGTTTTCGAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGTCT
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
** *
8012 TCAAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * *
8032 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTCATA-GAGTGCTACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCT
*
8096 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *
8116 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAGAATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
8181 TGAAAGGGTGCCACTTACT
66 TGAAAGGATGCCACTGACT
* * * * * *
8200 TATGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * * *
8265 TAAAAGGGTACCACTAACT
66 TGAAAGGATGCCACTGACT
* * * * *
8284 TGTGGGCCTTAGAAAA-ATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCAACTAACTTGTAGG
1 TGTGGG-CTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
* * *
8347 CTTTCAAAGGATGCTACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * *
8369 TGTAGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-T
8434 TTG-AAGAGATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
* * * * * *
8454 TGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCAT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
8519 TGAAAAGG-TACCACTGACT
66 TG-AAAGGATGCCACTGACT
* * * *
8538 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *** *
8603 TGAAAGGGTATTACTAACT
66 TGAAAGGATGCCACTGACT
*
8622 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* * *
8686 TTGAAAAGTTGCCAGT-ACT
65 TTGAAAGGATGCCACTGACT
* *
8705 TGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGG
1 TGTGGGCTTTGAAA-AGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
*
8769 CTTTGAAAGGATGCCACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * * * * * * *
8791 TGTAGGCTTT-AAAGGGTGTCACTGACTTGTGGGTTTTAAAAAGATGCCATTGACTTGTGGG-TT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
8854 TTAAAGAGATGCCATTGACT
66 TGAAAG-GATGCCACTGACT
* * * * *
8874 TGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCT
1 TGTGGGCTTTGAAA-AGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
8939 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
8959 TGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
9024 TGAAAGGATGCCACTAACC
66 TGAAAGGATGCCACTGACT
* * * * * * *
9043 TGTGGTCTTTTGAAGAGATACCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGTG
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
* * * *
9107 TTTTGAAAAGATGTCACTAACT
63 CTTTGAAAGGATGCCACTGACT
* * * * * * * *
9129 TATGGGTTTTGAAAGGGTGCCACTCATTTATGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-T
* *
9194 TTGAAAAGATGCCATTGACT
65 TTGAAAGGATGCCACTGACT
** * * * *
9214 TGTTTGCTTTGAAAAGATGCCACTAACCTGTGGGCTTTGAAAGGATACCACTGACTTGTGAGTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
9279 TGAAAGGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * * *
9298 TGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCGTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
9362 TTGAAAGGGTGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
9382 TGTGGGCTTTGATAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTAG-GGTCT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTT-GTGGGC-
9446 TTTG-AAGAGATGCCACTGACT
64 TTTGAAAG-GATGCCACTGACT
** * * * *
9467 TGTGTTCTTTTGAAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* * *
9532 TTAAAAGGGTGCCGCTGACT
65 TTGAAAGGATGCCACTGACT
* *
9552 TGTGGGCTTTGAAATGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC
9616 TTTTG-AAGAGATGCCACTGACT
64 -TTTGAAAG-GATGCCACTGACT
* * * * * * *
9638 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACTTGT-GGTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
9702 TCGAAAAGATGCCACTGACT
66 T-GAAAGGATGCCACTGACT
* * *
9722 TGTGGGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCT
*
9786 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * *
9806 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTCGAAAGGATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
9871 TGAAAGGGTGCCACT-ACCT
66 TGAAAGGATGCCACTGA-CT
* * * * *
9890 TGTGGGCTTTGAAAGGAAGCGATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * * *
9955 TAAAAGGGTACCATTGACT
66 TGAAAGGATGCCACTGACT
* *
9974 TGTGGGCTTTGGAAAA-ATGGCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
*
10037 CTTTGAAAAGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
10059 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA-------A--G--ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTG
* *
10123 ACTTGTGGGCTTTGAAAAGATGTCACTGACT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
10154 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * *
10218 TGAAAAGATTCCATTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
10237 TGTGGGTTTTTGAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGG-CTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
10302 TTGAAAGGGTGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * *
10322 TGTGGAG-TTTGAAAAGAAGCCATTAACTTATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGG-GCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* * * *
10386 TTAAAAGGGTACCATTGACT
65 TTGAAAGGATGCCACTGACT
* * *
10406 TGTGAGCTTTGGAAAA-ATGCCACTAACTTGTGAGCTTTTG-AAGATATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
10469 CTTTGAAAGGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
10491 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA-------A--G--ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTG
* *
10555 ACTTGTGGGCTTTGAAAAGATGTCACTGACT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
10586 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCTACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
10650 TGAAAAGATGCCATTGACT
66 TGAAAGGATGCCACTGACT
* * * * *
10669 TGTGGGTTTTTGAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGG-CTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
10734 TTGAAAGGGTGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* * * * *
10754 TGTGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCAGTAATTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
* * * *
10819 TAAAAGGGTACCATTGACT
66 TGAAAGGATGCCACTGACT
*
10838 TGTGGGCTTTGGAAAA-ATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACTTGTGGG
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGG
10901 CTTTGAAAGGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
10923 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA-------A--G--ATGCCACTAACTTGTGGGCTTTGAAAGGA-TGCCACTG
* *
10987 ACTTGTGGGCTTTGAAAGGACGCCACTGATT
54 ACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
11018 TGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTAGAAAAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
11082 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * *
11102 TGTGAGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
*
11166 TTGAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* *
11186 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
11251 TGAAAGGATGCCACTGATT
66 TGAAAGGATGCCACTGACT
* * * * *
11270 TGTGGGCTTTGAAAGGATGCCACCAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGTCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
11335 TGAAAAGG-TGTCC-CTGACT
66 TG-AAAGGATG-CCACTGACT
* *
11354 TGTGGTCTTTGAAAGGATGCC
1 TGTGGGCTTTGAAAAGATGCC
11375 TTTGACTTGT
Statistics
Matches: 4276, Mismatches: 596, Indels: 323
0.82 0.11 0.06
Matches are distributed among these distances:
82 55 0.01
83 330 0.08
84 2145 0.50
85 1117 0.26
86 340 0.08
87 39 0.01
88 18 0.00
91 3 0.00
94 8 0.00
95 162 0.04
96 59 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (84 bp):
TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
TGAAAGGATGCCACTGACT
Found at i:10101 original size:39 final size:39
Alignment explanation
Indices: 10047--10124 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
10037 CTTTGAAAAG
* * *
10047 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
10086 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
10125 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:10127 original size:28 final size:29
Alignment explanation
Indices: 10086--11391 Score: 1015
Period size: 28 Copynumber: 45.8 Consensus size: 29
10076 TGCTACTGAC
*
10086 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
10115 -TGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10142 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10170 ATGCCACTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10197 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10225 ATTCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
*
10254 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10282 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10310 GTGCCACTGACTTGTGGAG-TTTGAAA-AG
1 ATGCCACTGACTTGTGG-GCTTTGAAAGAG
* * * *
10338 AAGCCATTAACTTATGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10366 ATGCCACTAACTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
10394 GTACCATTGACTTGTGAGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* * *
10422 ATGCCACTAACTTGTGAGCTTTTG-AAGAT
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
10451 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
10479 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *** *** **
10507 GTGCTACTGACATG-CCACTAACTTGTGGGCT
1 ATGCCACTGACTTGTGGGCT---TTGAAAGAG
* ** * ** ** *
10538 TTGAAAGAGTGCCAC-TGACTTGTGGGCTTTGAAAAG
1 ATG--CCACTG--ACTTG---TG-GGCTTTGAAAGAG
*
10574 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10602 ATGCCACTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10629 GTGCTACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
10657 ATGCCATTGACTTGTGGGTTTTTG-AAGAG
1 ATGCCACTGACTTGTGGG-CTTTGAAAGAG
*
10686 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10714 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
10742 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10770 AAGCCATTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
10798 ATGCCAGTAATTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
10826 GTACCATTGACTTGTGGGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
* *
10854 ATGCCACTAACTTGTGAGCTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGC-TTTGAAAGAG
10883 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
10911 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *** *** **
10939 GTGCTACTGACATG-CCACTAACTTGTGGGCT
1 ATGCCACTGACTTGTGGGCT---TTGAAAGAG
* ** * ** **
10970 TTGAAAGAGTGCCAC-TGACTTGTGGGCTTTGAA-AGG
1 ATG--CCACTG--ACTTG---TG-GGCTTTGAAAGA-G
* * *
11006 ACGCCACTGATTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
11034 GTGCCACTGACTTGTGGGCTTAGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
11062 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11090 ATGCCACTAACTTGTGAGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11118 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
11146 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11174 ATGCCACTAACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
11202 ATGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
11230 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
11258 ATGCCACTGATTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
**
11286 ATGCCACCAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
11314 GTGCCACTGACTTTTGGTCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
11342 GTGTCC-CTGACTTGTGGTCTTTGAAAG-G
1 ATG-CCACTGACTTGTGGGCTTTGAAAGAG
** *
11370 ATGCCTTTGACTTGTGGTCTTT
1 ATGCCACTGACTTGTGGGCTTT
11392 AAAAAGGGCT
Statistics
Matches: 1031, Mismatches: 176, Indels: 141
0.76 0.13 0.10
Matches are distributed among these distances:
27 60 0.06
28 801 0.78
29 120 0.12
30 12 0.01
31 4 0.00
32 3 0.00
33 10 0.01
34 10 0.01
35 4 0.00
36 7 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (29 bp):
ATGCCACTGACTTGTGGGCTTTGAAAGAG
Found at i:10533 original size:39 final size:39
Alignment explanation
Indices: 10479--10556 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
10469 CTTTGAAAGG
* * *
10479 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
10518 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
10557 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:10965 original size:39 final size:39
Alignment explanation
Indices: 10911--10988 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
10901 CTTTGAAAGG
* * *
10911 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
10950 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
10989 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:11398 original size:56 final size:55
Alignment explanation
Indices: 10951--11460 Score: 569
Period size: 56 Copynumber: 9.1 Consensus size: 55
10941 GCTACTGACA
* *
10951 TGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTAAAAGG
* * * * * *
11006 ACGCCACTGATTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTAGAAAAGA
1 -TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT-TAAAAGG
* *
11063 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTTTAAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAA-GG
* *
11119 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGG
* * *
11174 ATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGA
1 -TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGG
* *
11231 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGATTTGTGGGCTTTGAAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGG
** * * *
11286 ATGCCACCAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGTCTTTGAAAAGG
1 -TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAAGG
* ** *
11343 TGTCC-CTGACTTGTGGTCTTTGAAAGGATGCCTTTGACTTGTGGTCTTTAAAAAGGG
1 TG-CCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-AAAA-GG
* * * * * * *
11400 CTGCCACGGAGTTGTGGTCTTT-ATAAGGTTGCCACGGAGTTGTGGAC-TTAAAAGG
1 -TGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTGACTTGTGGGCTTTAAAAGG
11455 TTGCCA
1 -TGCCA
11461 TGGAGTTATG
Statistics
Matches: 390, Mismatches: 52, Indels: 25
0.84 0.11 0.05
Matches are distributed among these distances:
55 17 0.04
56 317 0.81
57 23 0.06
58 33 0.08
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (55 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAGG
Found at i:11440 original size:28 final size:28
Alignment explanation
Indices: 10961--11482 Score: 189
Period size: 28 Copynumber: 18.6 Consensus size: 28
10951 TGCCACTAAC
* * * *
10961 TTGTGGGCTTTGAAAGAG-TGCCACTGAC
1 TTGTGGTCTTTAAAAG-GTTGCCACGGAG
* * ** * *
10989 TTGTGGGCTTTGAAAGGACGCCACTGAT
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
11017 TTGTGGGCTTTAAAAGGGTGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
11045 TTGTGGGC-TTAGAAAAGATGCCACTGAC
1 TTGTGGTCTTTA-AAAGGTTGCCACGGAG
* * * ** *
11073 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
11101 TTGTGAG-CTTTAAAAGGGTGCCACTGAC
1 TTGTG-GTCTTTAAAAGGTTGCCACGGAG
* * * *
11129 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * ** *
11157 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
11185 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
11213 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * * *
11241 TTGTGGGCTTTGAAAGGATGCCACTGAT
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * ** *
11269 TTGTGGGCTTTGAAAGGATGCCACCAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
11297 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
11325 TTTTGGTCTTTGAAAAGG-TGTCC-CTGAC
1 TTGTGGTCTTT-AAAAGGTTG-CCACGGAG
* * *** *
11353 TTGTGGTCTTTGAAAGGATGCCTTTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
*
11381 TTGTGGTCTTTAAAAAGGGCTGCCACGGAG
1 TTGTGGTCTTT-AAAA-GGTTGCCACGGAG
*
11411 TTGTGGTCTTTATAAGGTTGCCACGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* *
11439 TTGTGGAC-TTAAAAGGTTGCCATGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
11466 TTATGGACTTAAAAAGG
1 TTGTGGTCTTTAAAAGG
11483 AATGCCACTA
Statistics
Matches: 432, Mismatches: 46, Indels: 32
0.85 0.09 0.06
Matches are distributed among these distances:
27 42 0.10
28 348 0.81
29 23 0.05
30 19 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
TTGTGGTCTTTAAAAGGTTGCCACGGAG
Found at i:11465 original size:27 final size:27
Alignment explanation
Indices: 11401--11479 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
11391 TAAAAAGGGC
* *
11401 TGCCACGGAGTTGTGGTCTTTATAAGGT
1 TGCCACGGAGTTGTGGAC-TTAAAAGGT
11429 TGCCACGGAGTTGTGGACTTAAAAGGT
1 TGCCACGGAGTTGTGGACTTAAAAGGT
* *
11456 TGCCATGGAGTTATGGACTTAAAA
1 TGCCACGGAGTTGTGGACTTAAAA
11480 AGGAATGCCA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 30 0.64
28 17 0.36
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.30
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGT
Found at i:12872 original size:32 final size:30
Alignment explanation
Indices: 12818--12878 Score: 77
Period size: 32 Copynumber: 2.0 Consensus size: 30
12808 TGTTGTTCCC
*
12818 TTTTTATTTTATTTTTGCACTTTTTCTTTG
1 TTTTTATTTTATTTTTGCACTTTTGCTTTG
* *
12848 TTTTTCTTTTCATATTTTGTACTTTTGCTTT
1 TTTTTATTTT-AT-TTTTGCACTTTTGCTTT
12879 TGATATATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 9 0.35
31 2 0.08
32 15 0.58
ACGTcount: A:0.10, C:0.11, G:0.07, T:0.72
Consensus pattern (30 bp):
TTTTTATTTTATTTTTGCACTTTTGCTTTG
Found at i:22920 original size:24 final size:25
Alignment explanation
Indices: 22892--23023 Score: 106
Period size: 24 Copynumber: 5.2 Consensus size: 25
22882 AAAGCCACCC
22892 ATTTGTTTGTCAAAAATGGTGG-TT
1 ATTTGTTTGTCAAAAATGGTGGCTT
*
22916 ATTTGTGTTTGTCAAAAATGGTGGTTT
1 A-TT-TGTTTGTCAAAAATGGTGGCTT
* * **
22943 CCTTTGTATTTGTCAAATATGAAGGCTT
1 -ATTTG--TTTGTCAAAAATGGTGGCTT
* * *
22971 GTTTATTTGTCAAAATTGGTGGCTT
1 ATTTGTTTGTCAAAAATGGTGGCTT
* * *
22996 -GTTGTTTGTCAAAATTGGTGGCTA
1 ATTTGTTTGTCAAAAATGGTGGCTT
23020 ATTT
1 ATTT
23024 TTATTAGAAA
Statistics
Matches: 86, Mismatches: 15, Indels: 13
0.75 0.13 0.11
Matches are distributed among these distances:
24 22 0.26
25 20 0.23
26 21 0.24
27 7 0.08
28 16 0.19
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (25 bp):
ATTTGTTTGTCAAAAATGGTGGCTT
Found at i:22926 original size:26 final size:28
Alignment explanation
Indices: 22895--22959 Score: 98
Period size: 26 Copynumber: 2.4 Consensus size: 28
22885 GCCACCCATT
22895 TGTTTGTCAAAAATGGTGG-TT-ATTTG
1 TGTTTGTCAAAAATGGTGGTTTCATTTG
*
22921 TGTTTGTCAAAAATGGTGGTTTCCTTTG
1 TGTTTGTCAAAAATGGTGGTTTCATTTG
*
22949 TATTTGTCAAA
1 TGTTTGTCAAA
22960 TATGAAGGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 19 0.54
27 2 0.06
28 14 0.40
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (28 bp):
TGTTTGTCAAAAATGGTGGTTTCATTTG
Found at i:27511 original size:24 final size:26
Alignment explanation
Indices: 27487--27609 Score: 83
Period size: 28 Copynumber: 4.7 Consensus size: 26
27477 GCCACCCATT
*
27487 TGTTTGTTAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTA-TTTG
*
27514 TGTTTGTCAAAAATGGTGGTTTCCTTTG
1 TGTTTGTCAAAAATGGTGG-TT-ATTTG
* * * *
27542 TATTTGTCAAATATGGAGGCTT-GTT-
1 TGTTTGTCAAAAATGGTGG-TTATTTG
* * * *
27567 TATTTGTCAAAATTGGTGGCT-TGT-
1 TGTTTGTCAAAAATGGTGGTTATTTG
*
27591 TGTTTGTCAAAATTGGTGG
1 TGTTTGTCAAAAATGGTGG
27610 CTAATTTTTA
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
24 20 0.25
25 16 0.20
26 2 0.03
27 18 0.22
28 24 0.30
ACGTcount: A:0.21, C:0.07, G:0.26, T:0.46
Consensus pattern (26 bp):
TGTTTGTCAAAAATGGTGGTTATTTG
Found at i:27542 original size:28 final size:27
Alignment explanation
Indices: 27487--27557 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
27477 GCCACCCATT
*
27487 TGTTTGTTAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATTTTG
27514 TGTTTGTCAAAAATGGTGGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTTG
* *
27542 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
27558 AGGCTTGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 20 0.51
28 18 0.46
ACGTcount: A:0.23, C:0.06, G:0.24, T:0.48
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATTTTG
Found at i:27610 original size:24 final size:25
Alignment explanation
Indices: 27542--27611 Score: 99
Period size: 24 Copynumber: 2.8 Consensus size: 25
27532 GTTTCCTTTG
*
27542 TATTTGTC-AAATATGGAGGCTTGTT
1 TATTTGTCAAAAT-TGGTGGCTTGTT
27567 TATTTGTCAAAATTGGTGGCTTG-T
1 TATTTGTCAAAATTGGTGGCTTGTT
*
27591 TGTTTGTCAAAATTGGTGGCT
1 TATTTGTCAAAATTGGTGGCT
27612 AATTTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 21 0.50
25 17 0.40
26 4 0.10
ACGTcount: A:0.21, C:0.09, G:0.26, T:0.44
Consensus pattern (25 bp):
TATTTGTCAAAATTGGTGGCTTGTT
Done.