Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold262
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1141274
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 7 of 8
Found at i:776619 original size:31 final size:30
Alignment explanation
Indices: 776561--776624 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
776551 ATGGTTGAAT
* ** *
776561 TATAATTTAATTTTTTTTTAAAGTTTAATAA
1 TATAATTTAATTTTATTCAAAAATTTAA-AA
776592 TATAATTTAATTTTATTCAAAAATTTAAAA
1 TATAATTTAATTTTATTCAAAAATTTAAAA
776622 TAT
1 TAT
776625 TATTAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (30 bp):
TATAATTTAATTTTATTCAAAAATTTAAAA
Found at i:776645 original size:18 final size:19
Alignment explanation
Indices: 776595--776645 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
776585 TTAATAATAT
776595 AATTTAAT-TTTATTCAAA
1 AATTTAATATTTATTCAAA
*
776613 AATTTAAAATATTATT--AA
1 AATTTAATAT-TTATTCAAA
776631 AATATTAATATTTAT
1 AAT-TTAATATTTAT
776646 ATTTTAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 16 0.57
19 7 0.25
20 5 0.18
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTTAATATTTATTCAAA
Found at i:776816 original size:18 final size:17
Alignment explanation
Indices: 776780--776813 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
776770 TTATTTTTGC
776780 ATTAATTTTAAAATATT
1 ATTAATTTTAAAATATT
* *
776797 ATTATTTTTTAAATATT
1 ATTAATTTTAAAATATT
776814 TATGTTGGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTAATTTTAAAATATT
Found at i:778769 original size:25 final size:27
Alignment explanation
Indices: 778747--778830 Score: 78
Period size: 35 Copynumber: 2.8 Consensus size: 27
778737 TTATTAATAT
*
778747 TTATTTTAATTAATTATAATAATATTTA
1 TTATATTAA-TAATTATAATAATATTTA
778775 TTATATTAATAATTATAAAAATATAACAATATTTA
1 TTATATTAATAATTAT----A-AT---AATATTTA
778810 TTATATTAATAATTATAATAA
1 TTATATTAATAATTATAATAA
778831 ATATAATGAG
Statistics
Matches: 47, Mismatches: 1, Indels: 17
0.72 0.02 0.26
Matches are distributed among these distances:
27 9 0.19
28 8 0.17
30 2 0.04
31 2 0.04
32 2 0.04
35 24 0.51
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (27 bp):
TTATATTAATAATTATAATAATATTTA
Found at i:778800 original size:35 final size:36
Alignment explanation
Indices: 778761--778837 Score: 138
Period size: 35 Copynumber: 2.2 Consensus size: 36
778751 TTTAATTAAT
778761 TATAATAATATTTATTATATTAATAATTATAA-AAA
1 TATAATAATATTTATTATATTAATAATTATAATAAA
*
778796 TATAACAATATTTATTATATTAATAATTATAATAAA
1 TATAATAATATTTATTATATTAATAATTATAATAAA
778832 TATAAT
1 TATAAT
778838 GAGATCTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 31 0.79
36 8 0.21
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (36 bp):
TATAATAATATTTATTATATTAATAATTATAATAAA
Found at i:779292 original size:6 final size:7
Alignment explanation
Indices: 779268--779301 Score: 50
Period size: 7 Copynumber: 4.6 Consensus size: 7
779258 CATAACATGA
779268 TTTTATGT
1 TTTTAT-T
779276 TTATTATT
1 TT-TTATT
779284 TTTTATT
1 TTTTATT
779291 TTTTATT
1 TTTTATT
779298 TTTT
1 TTTT
779302 TACCATTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 16 0.64
8 5 0.20
9 4 0.16
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:780358 original size:23 final size:23
Alignment explanation
Indices: 780332--780383 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
780322 TACTAAAAAT
* *
780332 AATTTAATTAAATTT-ATTTATTA
1 AATTTAAATAAATTTAATAT-TTA
780355 AATTTAAATAAATTTAATATTTA
1 AATTTAAATAAATTTAATATTTA
780378 AATTTA
1 AATTTA
780384 TAATTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTTAAATAAATTTAATATTTA
Found at i:780767 original size:19 final size:17
Alignment explanation
Indices: 780743--780785 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
780733 TTTAAAATAT
780743 TTATATATTTATTTTATA
1 TTATATATTT-TTTTATA
780761 TTCATATTATTTTTTTATA
1 TT-ATA-TATTTTTTTATA
780780 TTATAT
1 TTATAT
780786 TATATTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.04
18 5 0.22
19 12 0.52
20 5 0.22
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATATATTTTTTTATA
Found at i:780788 original size:10 final size:10
Alignment explanation
Indices: 780743--780872 Score: 57
Period size: 10 Copynumber: 13.1 Consensus size: 10
780733 TTTAAAATAT
780743 TTATA-TAT-
1 TTATATTATA
*
780751 TTATTTTATA
1 TTATATTATA
780761 TTCATATTAT-
1 TT-ATATTATA
*
780771 TT-TTTTATA
1 TTATATTATA
780780 TTATATTATA
1 TTATATTATA
780790 TT-TAATTAT-
1 TTAT-ATTATA
780799 TT-T-TTATA
1 TTATATTATA
*
780807 TCATATT-TAA
1 TTATATTAT-A
*
780817 TTATATAAT-
1 TTATATTATA
780826 TTCATA-TATA
1 TT-ATATTATA
780836 TATATATATATA
1 T-TATAT-TATA
780848 TATATATATATA
1 T-TATAT-TATA
780860 TATATATATATA
1 T-TATAT-TATA
780872 T
1 T
780873 AAAAGATATT
Statistics
Matches: 98, Mismatches: 8, Indels: 28
0.73 0.06 0.21
Matches are distributed among these distances:
7 4 0.04
8 10 0.10
9 15 0.15
10 32 0.33
11 8 0.08
12 29 0.30
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.59
Consensus pattern (10 bp):
TTATATTATA
Found at i:780812 original size:22 final size:22
Alignment explanation
Indices: 780754--780820 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
780744 TATATATTTA
* *
780754 TTTTATATTCATA-TTATTTTTT
1 TTTTATA-TCATATTTAATTATT
*
780776 TATATTATATTATATTTAATTATT
1 T-T-TTATATCATATTTAATTATT
780800 TTTTATATCATATTTAATTAT
1 TTTTATATCATATTTAATTAT
780821 ATAATTTCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 19 0.50
23 6 0.16
24 13 0.34
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (22 bp):
TTTTATATCATATTTAATTATT
Found at i:780812 original size:27 final size:29
Alignment explanation
Indices: 780756--780813 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
780746 TATATTTATT
*
780756 TTATATTCATATTATTTTTTTATATTATA
1 TTATATTCATATTATTTTTTTATATCATA
*
780785 TTATATTTA-ATTA-TTTTTTATATCATA
1 TTATATTCATATTATTTTTTTATATCATA
780812 TT
1 TT
780814 TAATTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 15 0.56
28 4 0.15
29 8 0.30
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (29 bp):
TTATATTCATATTATTTTTTTATATCATA
Found at i:780827 original size:27 final size:27
Alignment explanation
Indices: 780771--780827 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
780761 TTCATATTAT
* * *
780771 TTTTTTATATTATATTATATTTAATTA
1 TTTTTTATATCATATTATAATTAATAA
780798 TTTTTTATATCATATT-TAATTATATAA
1 TTTTTTATATCATATTATAATTA-ATAA
780825 TTT
1 TTT
780828 CATATATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTTTTATATCATATTATAATTAATAA
Found at i:780834 original size:2 final size:2
Alignment explanation
Indices: 780829--780873 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
780819 ATATAATTTC
780829 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
780871 AT A
1 AT A
780874 AAAGATATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:781213 original size:17 final size:17
Alignment explanation
Indices: 781193--781237 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
781183 AAATAATTAA
781193 ATATATTTATATCAAAT
1 ATATATTTATATCAAAT
* *
781210 ATATATTCATATTAAAT
1 ATATATTTATATCAAAT
781227 ACTCATATTTA
1 A-T-ATATTTA
781238 AATTAAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 16 0.70
18 1 0.04
19 6 0.26
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATATTTATATCAAAT
Found at i:781455 original size:13 final size:13
Alignment explanation
Indices: 781437--781462 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
781427 TGCTGTAATG
781437 AATAAAAATAAAA
1 AATAAAAATAAAA
781450 AATAAAAATAAAA
1 AATAAAAATAAAA
781463 TTTTCGGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AATAAAAATAAAA
Found at i:781800 original size:17 final size:16
Alignment explanation
Indices: 781778--781812 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
781768 TTTAAAATTT
781778 TTATAAATATATATAAA
1 TTATAAATATATA-AAA
*
781795 TTATAAATTTATAAAA
1 TTATAAATATATAAAA
781811 TT
1 TT
781813 CATTCATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TTATAAATATATAAAA
Found at i:781893 original size:14 final size:13
Alignment explanation
Indices: 781871--781905 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
781861 TTAATATATG
781871 TATAATATATAAAA
1 TATAATATA-AAAA
*
781885 TATATTATAAAAA
1 TATAATATAAAAA
781898 TATAATAT
1 TATAATAT
781906 CTATTAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TATAATATAAAAA
Found at i:781900 original size:20 final size:20
Alignment explanation
Indices: 781863--781902 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
781853 AATAAATTTT
*
781863 AATATATGTATAATATATAA
1 AATATATGTATAAAATATAA
781883 AATATAT-TATAAAAATATAA
1 AATATATGTAT-AAAATATAA
781903 TATCTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
AATATATGTATAAAATATAA
Found at i:792612 original size:21 final size:20
Alignment explanation
Indices: 792574--792617 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
792564 TATAATCTAA
792574 AAATAATAAAAATAAAATTAT
1 AAATAATAAAAATAAAATT-T
* * *
792595 AAATATTAAAATTTAAATTT
1 AAATAATAAAAATAAAATTT
792615 AAA
1 AAA
792618 CTTAGACTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATAATAAAAATAAAATTT
Found at i:795010 original size:2 final size:2
Alignment explanation
Indices: 795003--795031 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
794993 GAAAGAAATA
795003 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
795032 ATAGGTATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:796108 original size:2 final size:2
Alignment explanation
Indices: 796091--796126 Score: 54
Period size: 2 Copynumber: 17.5 Consensus size: 2
796081 GCCGGCAAGT
*
796091 TA TA TCA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
796127 CAAATCCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:800674 original size:19 final size:18
Alignment explanation
Indices: 800641--800677 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
800631 TATGTTAGAT
*
800641 TTTTTTTTAAAATTTTTA
1 TTTTTTTAAAAATTTTTA
800659 TTTTTTTAAAAGATTTTTA
1 TTTTTTTAAAA-ATTTTTA
800678 AAAAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTTTTAAAAATTTTTA
Found at i:800783 original size:20 final size:21
Alignment explanation
Indices: 800744--800783 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
800734 TTAGTACTAT
* *
800744 AAAAAAATGAAAAGTCGGAAC
1 AAAAAAATCAAAAGTAGGAAC
800765 AAAAAAATCAAAAG-AGGAA
1 AAAAAAATCAAAAGTAGGAA
800784 ATTGTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.68, C:0.07, G:0.17, T:0.07
Consensus pattern (21 bp):
AAAAAAATCAAAAGTAGGAAC
Found at i:801516 original size:11 final size:12
Alignment explanation
Indices: 801489--801519 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
801479 AATTTAATCG
801489 ATTTTAAATTAA
1 ATTTTAAATTAA
801501 ATTTTAAATT-A
1 ATTTTAAATTAA
801512 ATTTTAAA
1 ATTTTAAA
801520 CTCAAACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.47
12 10 0.53
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTTAAATTAA
Found at i:808853 original size:36 final size:36
Alignment explanation
Indices: 808812--808919 Score: 94
Period size: 36 Copynumber: 3.1 Consensus size: 36
808802 CATATATGTG
* * * * *
808812 TATAAATATCATATATGAATATGTATTAAATTTTAA
1 TATAAATATCAAATACGAATATATATCAAATTTGAA
* *
808848 TATAAATATCAAATGCGAATATATATCGAATTTGAA
1 TATAAATATCAAATACGAATATATATCAAATTTGAA
* ** * *
808884 TATGAATATCACGTAC-AA-ATATATCTAATATGAA
1 TATAAATATCAAATACGAATATATATCAAATTTGAA
808918 TA
1 TA
808920 ATTTTAAAAT
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
34 16 0.27
35 2 0.03
36 41 0.69
ACGTcount: A:0.47, C:0.07, G:0.08, T:0.37
Consensus pattern (36 bp):
TATAAATATCAAATACGAATATATATCAAATTTGAA
Found at i:810280 original size:24 final size:24
Alignment explanation
Indices: 810236--810282 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
810226 ATATAATATG
**
810236 GGGTTATTCAAAAAAGTTTTAAAC
1 GGGTTATTCAAAAAAAATTTAAAC
810260 GGGTATATT-AAAAAAAATTTAAA
1 GGGT-TATTCAAAAAAAATTTAAA
810283 TTTTTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.49, C:0.04, G:0.15, T:0.32
Consensus pattern (24 bp):
GGGTTATTCAAAAAAAATTTAAAC
Found at i:810393 original size:27 final size:27
Alignment explanation
Indices: 810355--810433 Score: 158
Period size: 27 Copynumber: 2.9 Consensus size: 27
810345 GTAAGACACG
810355 AGTATCGATACTTAAAAGACAATAAGA
1 AGTATCGATACTTAAAAGACAATAAGA
810382 AGTATCGATACTTAAAAGACAATAAGA
1 AGTATCGATACTTAAAAGACAATAAGA
810409 AGTATCGATACTTAAAAGACAATAA
1 AGTATCGATACTTAAAAGACAATAA
810434 AGAGTCAAGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (27 bp):
AGTATCGATACTTAAAAGACAATAAGA
Found at i:810868 original size:20 final size:18
Alignment explanation
Indices: 810829--810870 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 18
810819 TGTGGACGCA
810829 TTAATTAATTTAATATTT
1 TTAATTAATTTAATATTT
810847 TTAATATAAGTTTAAATATTT
1 TTAAT-TAA-TTT-AATATTT
810868 TTA
1 TTA
810871 TTGTTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.24
19 3 0.14
20 3 0.14
21 10 0.48
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TTAATTAATTTAATATTT
Found at i:810897 original size:3 final size:3
Alignment explanation
Indices: 810889--810920 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
810879 TAATTACATA
810889 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
810921 GCTTAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:811068 original size:23 final size:24
Alignment explanation
Indices: 811030--811085 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
811020 ATTTAACTTT
*
811030 AATTATTTTTATTTAAA-TTATACA
1 AATTTTTTTTATTTAAACTTATA-A
*
811054 AATTTTTTTTA-TTAAACTTTTAA
1 AATTTTTTTTATTTAAACTTATAA
811077 AATTTTTTT
1 AATTTTTTT
811086 AATAAATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 15 0.52
24 14 0.48
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (24 bp):
AATTTTTTTTATTTAAACTTATAA
Found at i:812479 original size:17 final size:16
Alignment explanation
Indices: 812385--812523 Score: 58
Period size: 15 Copynumber: 8.6 Consensus size: 16
812375 TATGACATAA
*
812385 ATAAATTATAAAAATAT
1 ATAAA-TATAAAATTAT
* *
812402 AATAAATATTATATTAAT
1 -ATAAATATAAAATT-AT
** *
812420 ATATTTTTAAAATT-T
1 ATAAATATAAAATTAT
812435 ATATAATAT-AAATTAT
1 ATA-AATATAAAATTAT
812451 -TAACATATTAAAATTAAT
1 ATAA-ATA-TAAAATT-AT
812469 ATAAATATAAAA-TAT
1 ATAAATATAAAATTAT
* * *
812484 TTTAA-ATACAATTAT
1 ATAAATATAAAATTAT
**
812499 A-ATTTAATAAAA-TAT
1 ATAAAT-ATAAAATTAT
812514 ATAAATATAA
1 ATAAATATAA
812524 TACGAATAAA
Statistics
Matches: 88, Mismatches: 21, Indels: 27
0.65 0.15 0.20
Matches are distributed among these distances:
14 6 0.07
15 30 0.34
16 12 0.14
17 25 0.28
18 12 0.14
19 3 0.03
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (16 bp):
ATAAATATAAAATTAT
Found at i:813553 original size:2 final size:2
Alignment explanation
Indices: 813546--813592 Score: 60
Period size: 2 Copynumber: 23.5 Consensus size: 2
813536 CTGATGTGTC
* *
813546 TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA AA AA GTA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
813588 TA TA T
1 TA TA T
813593 TCTTAATTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 1 0.02
2 39 0.95
3 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:813567 original size:15 final size:15
Alignment explanation
Indices: 813547--813576 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
813537 TGATGTGTCT
813547 ATATATATATATATA
1 ATATATATATATATA
813562 ATATATATATATATA
1 ATATATATATATATA
813577 TAAAAAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATATATATATA
Found at i:813568 original size:17 final size:17
Alignment explanation
Indices: 813546--813592 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
813536 CTGATGTGTC
813546 TATATATATATATATAA
1 TATATATATATATATAA
813563 TATATATATATATATAA
1 TATATATATATATATAA
*
813580 -AAAGTATATATAT
1 TATA-TATATATAT
813593 TCTTAATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 2 0.07
17 26 0.93
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
TATATATATATATATAA
Found at i:813570 original size:19 final size:19
Alignment explanation
Indices: 813546--813592 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
813536 CTGATGTGTC
*
813546 TATATATATATATATAATA-
1 TATATATATATATA-AAAAG
813565 TATATATATATATAAAAAG
1 TATATATATATATAAAAAG
813584 TATATATAT
1 TATATATAT
813593 TCTTAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 3 0.12
19 23 0.88
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TATATATATATATAAAAAG
Found at i:814941 original size:5 final size:6
Alignment explanation
Indices: 814904--814993 Score: 57
Period size: 6 Copynumber: 15.0 Consensus size: 6
814894 AAATTTTAAA
*
814904 ATATTT ATATTCGT ATATTT ATA-TT ATATTT -TAATTT ATATTT ATACATT
1 ATATTT ATATT--T ATATTT ATATTT ATATTT AT-ATTT ATATTT ATA-TTT
* *
814954 -CATTT AT-TTT A-ATTT ATAAATTT ATATTT AT-GTT ATATTT
1 ATATTT ATATTT ATATTT AT--ATTT ATATTT ATATTT ATATTT
814994 TTTTAAATCA
Statistics
Matches: 66, Mismatches: 6, Indels: 24
0.69 0.06 0.25
Matches are distributed among these distances:
5 20 0.30
6 31 0.47
7 3 0.05
8 12 0.18
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.61
Consensus pattern (6 bp):
ATATTT
Found at i:814943 original size:23 final size:25
Alignment explanation
Indices: 814917--814981 Score: 71
Period size: 28 Copynumber: 2.5 Consensus size: 25
814907 TTTATATTCG
814917 TATATTTATATT-A-TATTTTAATT
1 TATATTTATATTCATTATTTTAATT
814940 TATATTTATACATTCATTTATTTTAATT
1 TATATTTAT--ATTCA-TTATTTTAATT
814968 TATAAATTTATATT
1 TAT--ATTTATATT
814982 TATGTTATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
23 9 0.26
25 3 0.09
26 1 0.03
28 16 0.46
30 6 0.17
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (25 bp):
TATATTTATATTCATTATTTTAATT
Found at i:815207 original size:27 final size:27
Alignment explanation
Indices: 815172--815228 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
815162 TCATTGTGTT
815172 TTATTTTAAATTCAAATCGAATGATTA
1 TTATTTTAAATTCAAATCGAATGATTA
815199 TTATTTTAAATTCAAATCGAATGATTA
1 TTATTTTAAATTCAAATCGAATGATTA
815226 TTA
1 TTA
815229 GGAATACCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (27 bp):
TTATTTTAAATTCAAATCGAATGATTA
Found at i:819064 original size:24 final size:24
Alignment explanation
Indices: 819032--819077 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
819022 CAGGAAAAAG
* * *
819032 TAACTTTTTTTAATAATAATAATA
1 TAACATTTTATAATAACAATAATA
819056 TAACATTTTATAATAACAATAA
1 TAACATTTTATAATAACAATAA
819078 CAATAGTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (24 bp):
TAACATTTTATAATAACAATAATA
Found at i:819800 original size:24 final size:24
Alignment explanation
Indices: 819773--819845 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
819763 ATAATTTTTA
819773 ATATATTAATAATTTAAAT-TATAT
1 ATATATTAATAATTTAAATATAT-T
*
819797 ATATATTAATATATTTATATATATT
1 ATATATTAATA-ATTTAAATATATT
* * **
819822 ATATTTTAATTATTTTTATATATT
1 ATATATTAATAATTTAAATATATT
819846 TAATTATATC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 23 0.53
25 17 0.40
26 3 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
ATATATTAATAATTTAAATATATT
Found at i:820512 original size:2 final size:2
Alignment explanation
Indices: 820505--820550 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
820495 TGCCCCATAC
*
820505 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
820547 AT AT
1 AT AT
820551 CTTAACTTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:827228 original size:20 final size:19
Alignment explanation
Indices: 827182--827229 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
827172 AATTTATACA
**
827182 TAAAAAAGATTAATTTTTTT
1 TAAAAAA-ATTAATTTTTCG
827202 TAAAAAAATTAATTTTTCG
1 TAAAAAAATTAATTTTTCG
827221 TAAGAAAAA
1 TAA-AAAAA
827230 ATTATTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (19 bp):
TAAAAAAATTAATTTTTCG
Found at i:827801 original size:19 final size:19
Alignment explanation
Indices: 827749--827819 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
827739 TATAATTTAT
* **
827749 TAATATTTTAAATGTTATA
1 TAATAATTTAAATAATATA
*
827768 TAA-AA-TTAATTATAATGTA
1 TAATAATTTAA--ATAATATA
827787 TAATAATTTAAATAATATA
1 TAATAATTTAAATAATATA
*
827806 TAATATTTTAAATA
1 TAATAATTTAAATA
827820 TAATTATGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
17 4 0.10
18 1 0.02
19 31 0.74
20 2 0.05
21 4 0.10
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATAATTTAAATAATATA
Found at i:828380 original size:15 final size:15
Alignment explanation
Indices: 828344--828389 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
828334 TTAATTTTTG
* *
828344 ATATTTAAATACATTT
1 ATATTT-AATATATTA
*
828360 ATATTTAGTATATTA
1 ATATTTAATATATTA
828375 ATATTTAATATATTA
1 ATATTTAATATATTA
828390 CTAATAAATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 20 0.77
16 6 0.23
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATTTAATATATTA
Found at i:828630 original size:6 final size:6
Alignment explanation
Indices: 828598--828630 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
828588 AATTTGTATC
*
828598 ATATTT ATA-TT ATAATT ATATTT ATATTT ATAT
1 ATATTT ATATTT ATATTT ATATTT ATATTT ATAT
828631 AAATTTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (6 bp):
ATATTT
Found at i:828757 original size:16 final size:16
Alignment explanation
Indices: 828710--828783 Score: 60
Period size: 16 Copynumber: 4.5 Consensus size: 16
828700 TAGAGAGTAC
828710 AAATATAAACAAATAATAT
1 AAATAT-AA-AAA-AATAT
* * *
828729 AGATATGATAAAATAT
1 AAATATAAAAAAATAT
*
828745 AAATATAAAAAAATTT
1 AAATATAAAAAAATAT
**
828761 AAATA-ATTAAAATAT
1 AAATATAAAAAAATAT
828776 AAATATAA
1 AAATATAA
828784 TACATTAATA
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
15 12 0.28
16 23 0.53
17 2 0.05
18 1 0.02
19 5 0.12
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (16 bp):
AAATATAAAAAAATAT
Found at i:829456 original size:38 final size:38
Alignment explanation
Indices: 829390--829495 Score: 185
Period size: 38 Copynumber: 2.8 Consensus size: 38
829380 TTATTGGTGG
*
829390 CTACTGCCAAGCTTAAATTGATGGCTAACTGGAATTTGA
1 CTACTGCCAAGCTT-AATTGATGGCTAACTGGAAATTGA
829429 CTACTGCCAAGCTTAATTGATGGCTAACTGGAAATTGA
1 CTACTGCCAAGCTTAATTGATGGCTAACTGGAAATTGA
*
829467 CTACTGCCAAACTTAATTGATGGCTAACT
1 CTACTGCCAAGCTTAATTGATGGCTAACT
829496 ACAATTCAAA
Statistics
Matches: 65, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
38 51 0.78
39 14 0.22
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (38 bp):
CTACTGCCAAGCTTAATTGATGGCTAACTGGAAATTGA
Found at i:829978 original size:2 final size:2
Alignment explanation
Indices: 829971--830002 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
829961 AGCTACCATG
829971 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
830003 AAATCAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:830547 original size:50 final size:50
Alignment explanation
Indices: 830493--830661 Score: 200
Period size: 50 Copynumber: 3.4 Consensus size: 50
830483 CTATTCTTCG
* *
830493 AGGTGACTGTAATTGTTGACTATTCTTCACTAACCTTTGACAATTA-AGA
1 AGGTGACCGTAATTGTTGACTATTCTTCACCAACCTTTGACAATTAGAGA
* * * *
830542 TAGGTGACCATAATTGTTGACTATTCTTCACCAACCTTTAATAATCGAGAGA
1 -AGGTGACCGTAATTGTTGACTATTCTTCACCAACCTTTGACAAT-TAGAGA
* * *
830594 AGTTG-CCGTAATTGTTAACTATTATTCACCAACCTTTGACAA-TAGAGA
1 AGGTGACCGTAATTGTTGACTATTCTTCACCAACCTTTGACAATTAGAGA
*
830642 GAGGTGATCGTAATTGTTGA
1 -AGGTGACCGTAATTGTTGA
830662 GGTGATCGTA
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
48 5 0.05
49 4 0.04
50 82 0.83
51 5 0.05
52 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (50 bp):
AGGTGACCGTAATTGTTGACTATTCTTCACCAACCTTTGACAATTAGAGA
Found at i:830665 original size:18 final size:18
Alignment explanation
Indices: 830642--830679 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
830632 ACAATAGAGA
830642 GAGGTGATCGTAATTGTT
1 GAGGTGATCGTAATTGTT
830660 GAGGTGATCGTAATTGTT
1 GAGGTGATCGTAATTGTT
830678 GA
1 GA
830680 CTATTTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.05, G:0.34, T:0.37
Consensus pattern (18 bp):
GAGGTGATCGTAATTGTT
Found at i:830709 original size:68 final size:68
Alignment explanation
Indices: 830600--830729 Score: 215
Period size: 68 Copynumber: 1.9 Consensus size: 68
830590 GAGAAGTTGC
830600 CGTAATTGTTAACTATTATTCACCAACCTTTGACAATAGAGAGAGGTGATCGTAATTGTTGAGGT
1 CGTAATTGTTAACTATTATTCACCAACCTTTGACAATAGAGAGAGGTGATCGTAATTGTTGAGGT
830665 GAT
66 GAT
* * * * *
830668 CGTAATTGTTGACTATTTTTCATCAACCTTTGATAATAGAGAGAGGTGGTCGTAATTGTTGA
1 CGTAATTGTTAACTATTATTCACCAACCTTTGACAATAGAGAGAGGTGATCGTAATTGTTGA
830730 CTTTAAGCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 57 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.36
Consensus pattern (68 bp):
CGTAATTGTTAACTATTATTCACCAACCTTTGACAATAGAGAGAGGTGATCGTAATTGTTGAGGT
GAT
Found at i:835255 original size:50 final size:50
Alignment explanation
Indices: 835059--835264 Score: 252
Period size: 50 Copynumber: 4.1 Consensus size: 50
835049 ACAAAGTGAT
* * ** *
835059 TTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACTGTAATTA
1 TTGACTATTCTTCACCAACCTTTGACAATAGAGAGAAGTGACCATAATTG
* * *
835109 TTGACTATTCTTCACCAACCTTTGACAATTGAGAG-AGATGGCCGTAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATAGAGAGAAG-TGACCATAATTG
* * **
835159 TTGACTATTCTTCACTAACCTTTGACAATAGAGAGATGTGGTCATAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATAGAGAGAAGTGACCATAATTG
* * * *
835209 TTCACTATTCTTCACCAACCTTTAACAATAAAAAGAAGTGACCATAATTG
1 TTGACTATTCTTCACCAACCTTTGACAATAGAGAGAAGTGACCATAATTG
835259 TTGACT
1 TTGACT
835265 TTAAGTAACT
Statistics
Matches: 135, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 1 0.01
50 133 0.99
51 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (50 bp):
TTGACTATTCTTCACCAACCTTTGACAATAGAGAGAAGTGACCATAATTG
Found at i:837056 original size:2 final size:2
Alignment explanation
Indices: 837049--837079 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
837039 AGTGTTCTAT
837049 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
837080 CAATTCAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:838452 original size:14 final size:14
Alignment explanation
Indices: 838433--838460 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
838423 CCATCCCAAT
838433 GGAAAAAAATAAAA
1 GGAAAAAAATAAAA
838447 GGAAAAAAATAAAA
1 GGAAAAAAATAAAA
838461 CTTTTGACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (14 bp):
GGAAAAAAATAAAA
Found at i:838517 original size:15 final size:15
Alignment explanation
Indices: 838497--838526 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
838487 TAAATAAATC
838497 ATATTTATTATATTT
1 ATATTTATTATATTT
*
838512 ATATTTTTTATATTT
1 ATATTTATTATATTT
838527 TAATTATATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
ATATTTATTATATTT
Found at i:838593 original size:24 final size:26
Alignment explanation
Indices: 838566--838616 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
838556 ATAAAATTTA
838566 AAATAT-AAATAATTTA-TTTTATAT
1 AAATATAAAATAATTTATTTTTATAT
* *
838590 AAATTTAAAATATTTTATTTTTATAT
1 AAATATAAAATAATTTATTTTTATAT
838616 A
1 A
838617 TCGTATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 9 0.39
26 9 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (26 bp):
AAATATAAAATAATTTATTTTTATAT
Found at i:838630 original size:24 final size:24
Alignment explanation
Indices: 838577--838651 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
838567 AATATAAATA
* **
838577 ATTTATTTTATATAAAT-TTAAAAT
1 ATTTATTTTATAT-AATCGTATTAT
838601 ATTTTATTTT-TATATATCGTATTAT
1 A-TTTATTTTATATA-ATCGTATTAT
* *
838626 ATTTATTTTATTTAATTGTATTAT
1 ATTTATTTTATATAATCGTATTAT
838650 AT
1 AT
838652 ATTTCTTGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
23 1 0.02
24 25 0.60
25 16 0.38
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (24 bp):
ATTTATTTTATATAATCGTATTAT
Found at i:840746 original size:22 final size:22
Alignment explanation
Indices: 840710--840754 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
840700 TTTTTAATTC
840710 AAATTATTATTTAAATAATAAT
1 AAATTATTATTTAAATAATAAT
*
840732 AAATT-TTATTATAAATATTAAT
1 AAATTATTATT-TAAATAATAAT
840754 A
1 A
840755 TAAAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATTATTATTTAAATAATAAT
Found at i:841953 original size:25 final size:25
Alignment explanation
Indices: 841919--841969 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
841909 AAATAAAAAT
841919 AAAAAATCAGAGCAATATAATTTAA
1 AAAAAATCAGAGCAATATAATTTAA
841944 AAAAAATCAGAGCAATATAATTTAA
1 AAAAAATCAGAGCAATATAATTTAA
841969 A
1 A
841970 TTAGTGCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.24
Consensus pattern (25 bp):
AAAAAATCAGAGCAATATAATTTAA
Found at i:842617 original size:2 final size:2
Alignment explanation
Indices: 842610--842640 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
842600 AGTGGGGGTT
842610 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
842641 TTATGTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:844500 original size:3 final size:3
Alignment explanation
Indices: 844492--844516 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
844482 GAATTTATGA
844492 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
844517 TTATAGTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:846300 original size:2 final size:2
Alignment explanation
Indices: 846250--846283 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
846240 AAATTAAGTG
846250 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
846284 CATGTTGTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:847508 original size:20 final size:19
Alignment explanation
Indices: 847485--847523 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
847475 TACATCTGCC
*
847485 TTTTATATTTATTATATTAT
1 TTTTAAATTTATTA-ATTAT
847505 TTTTAAATTTATTAATTAT
1 TTTTAAATTTATTAATTAT
847524 ATTATACTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTAAATTTATTAATTAT
Found at i:855124 original size:20 final size:21
Alignment explanation
Indices: 855101--855139 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
855091 TTTTTATAAA
*
855101 TAATTTTTAAAT-TTTTATTT
1 TAATATTTAAATATTTTATTT
*
855121 TAATATTTATATATTTTAT
1 TAATATTTAAATATTTTAT
855140 AATTAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TAATATTTAAATATTTTATTT
Found at i:862302 original size:2 final size:2
Alignment explanation
Indices: 862297--862323 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
862287 GGAAAAATAG
862297 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
862324 TTTGATTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:865504 original size:2 final size:2
Alignment explanation
Indices: 865497--865526 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
865487 TATCTCCTTA
*
865497 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
865527 TCTTATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:865751 original size:2 final size:2
Alignment explanation
Indices: 865746--865771 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
865736 ATATACATTC
865746 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
865772 CTTTGAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:866424 original size:28 final size:29
Alignment explanation
Indices: 866370--866424 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
866360 TTACTATTTT
*
866370 ATTTAAATAAAATTTTATACTTTTATTAC
1 ATTTAAATAAAATTTTATAATTTTATTAC
866399 ATTTAAAT-AAATTTTA-AATTTATATT
1 ATTTAAATAAAATTTTATAATTT-TATT
866425 CAAATAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 12 0.50
29 8 0.33
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (29 bp):
ATTTAAATAAAATTTTATAATTTTATTAC
Found at i:866450 original size:30 final size:29
Alignment explanation
Indices: 866408--866500 Score: 82
Period size: 30 Copynumber: 3.1 Consensus size: 29
866398 CATTTAAATA
866408 AATTTTAAATTTATATTCAAATAAATTCTT
1 AATTTT-AATTTATATTCAAATAAATTCTT
** *
866438 AACTTTTAATTTAT-TTCATTTTTAA-TCTAT
1 AA-TTTTAATTTATATTCA-AATAAATTCT-T
* *
866468 AATTTATAATTTATATTTAAATAAATTATT
1 AATTT-TAATTTATATTCAAATAAATTCTT
866498 AAT
1 AAT
866501 ATAAGTTAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
29 10 0.20
30 30 0.61
31 9 0.18
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (29 bp):
AATTTTAATTTATATTCAAATAAATTCTT
Found at i:868718 original size:18 final size:18
Alignment explanation
Indices: 868692--868743 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
868682 ACACCACAGA
868692 AATAATAATACTAATACT
1 AATAATAATACTAATACT
*
868710 AATACTAATACTAATACT
1 AATAATAATACTAATACT
* * *
868728 AAAAAGAATAATAATA
1 AATAATAATACTAATA
868744 AACAGCGACA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (18 bp):
AATAATAATACTAATACT
Found at i:868744 original size:6 final size:6
Alignment explanation
Indices: 868692--868729 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
868682 ACACCACAGA
*
868692 AATAAT AATACT AATACT AATACT AATACT AATACT AA
1 AATACT AATACT AATACT AATACT AATACT AATACT AA
868730 AAAGAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (6 bp):
AATACT
Found at i:874289 original size:23 final size:23
Alignment explanation
Indices: 874262--874326 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
874252 GACATTTAGT
874262 TAATATATTATTTGTATTAACA-A
1 TAATATATTATTTGTATTAA-ATA
*
874285 TAATA-ATAATATTGTATTAAATA
1 TAATATATTAT-TTGTATTAAATA
* *
874308 TAATAATTTTATTTATATT
1 TAAT-ATATTATTTGTATT
874327 TTTTTAAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
22 5 0.15
23 19 0.56
24 7 0.21
25 3 0.09
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.51
Consensus pattern (23 bp):
TAATATATTATTTGTATTAAATA
Found at i:874517 original size:36 final size:36
Alignment explanation
Indices: 874445--874518 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 36
874435 TGATATGTAT
874445 AAAATATATTTAATATACTAATTTTTTAAATTTAATA
1 AAAATATATTTAATATACTAATTTTTTAAA-TTAATA
874482 AAAATTATATATTAA-ATA-TAATTTTTTTAAA-TAATA
1 AAAA-TATAT-TTAATATACTAA-TTTTTTAAATTAATA
874518 A
1 A
874519 TTAAATAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
36 6 0.18
37 7 0.21
38 17 0.50
39 4 0.12
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (36 bp):
AAAATATATTTAATATACTAATTTTTTAAATTAATA
Found at i:876172 original size:10 final size:10
Alignment explanation
Indices: 876157--876193 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
876147 AAATAATAAA
876157 TAAATAAATC
1 TAAATAAATC
*
876167 TAAATAAATT
1 TAAATAAATC
876177 TAAATAAA-C
1 TAAATAAATC
876186 -AAATAAAT
1 TAAATAAAT
876194 ATGTTTATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.29
10 17 0.71
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAATAAATC
Found at i:876259 original size:27 final size:27
Alignment explanation
Indices: 876206--876255 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
876196 GTTTATTAGT
876206 TTAATTAATTAATAAAATATAATAATA
1 TTAATTAATTAATAAAATATAATAATA
876233 TTAATTATATT-AT-AAAT-TAATAA
1 TTAATTA-ATTAATAAAATATAATAA
876256 AATACAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.27
26 4 0.18
27 9 0.41
28 3 0.14
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
TTAATTAATTAATAAAATATAATAATA
Found at i:876284 original size:35 final size:35
Alignment explanation
Indices: 876206--876294 Score: 96
Period size: 35 Copynumber: 2.6 Consensus size: 35
876196 GTTTATTAGT
* *
876206 TTAATT-AATTAATAAAATATAATAATATTAATTA
1 TTAATTAAATTAATAAAATAAAATAATAATAATTA
*
876240 -TATTATAAATTAATAAAATACAAATAATAAT-ATTA
1 TTAAT-TAAATTAATAAAATA-AAATAATAATAATTA
*
876275 TTAATTAAATT-ATAATATAA
1 TTAATTAAATTAATAAAATAA
876295 CAACGATTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
33 4 0.09
34 8 0.17
35 23 0.50
36 11 0.24
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (35 bp):
TTAATTAAATTAATAAAATAAAATAATAATAATTA
Found at i:876287 original size:42 final size:39
Alignment explanation
Indices: 876208--876289 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 39
876198 TTATTAGTTT
* *
876208 AATTAATTAATAAAATATAATAATATTAATTATATTATA
1 AATTAATAAATAAAATATAATAATATTAATTAAATTATA
*
876247 AATTAATAAAATACAAATAATAATATTATTAATTAAATTATA
1 AATTAAT-AAATA-AAAT-ATAATAATATTAATTAAATTATA
876289 A
1 A
876290 TATAACAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
39 7 0.19
40 4 0.11
41 4 0.11
42 22 0.59
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (39 bp):
AATTAATAAATAAAATATAATAATATTAATTAAATTATA
Found at i:886247 original size:3 final size:3
Alignment explanation
Indices: 886239--886273 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
886229 TGTATTCTAT
*
886239 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTT TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
886274 TAGGTAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:891055 original size:3 final size:3
Alignment explanation
Indices: 891047--891095 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
891037 AATCAGTAAT
891047 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
891095 T
1 T
891096 GAAGGGTTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:892441 original size:15 final size:16
Alignment explanation
Indices: 892421--892457 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
892411 ATTTTTAAAA
892421 AAATTATA-TAAATTT
1 AAATTATATTAAATTT
*
892436 AAATTA-ATTTAATTT
1 AAATTATATTAAATTT
892451 AAATTAT
1 AAATTAT
892458 TATCAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 1 0.05
15 18 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AAATTATATTAAATTT
Found at i:895391 original size:26 final size:26
Alignment explanation
Indices: 895362--895413 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
895352 ATACAGACTC
895362 AGGTGCAAGTGTCGGATATAAGTATA
1 AGGTGCAAGTGTCGGATATAAGTATA
895388 AGGTGCAAGTGTCGGATATAAGTATA
1 AGGTGCAAGTGTCGGATATAAGTATA
895414 TATATTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.27
Consensus pattern (26 bp):
AGGTGCAAGTGTCGGATATAAGTATA
Found at i:898746 original size:27 final size:26
Alignment explanation
Indices: 898716--898770 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
898706 ATTTTTATAT
*
898716 AATTTAAATAATTTATTTAAAATTTTA
1 AATTCAAATAATTTATTT-AAATTTTA
* *
898743 AATTCAATTAATTTATTTAATTTTTA
1 AATTCAAATAATTTATTTAAATTTTA
898769 AA
1 AA
898771 AATTTAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
AATTCAAATAATTTATTTAAATTTTA
Found at i:903613 original size:2 final size:2
Alignment explanation
Indices: 903606--903635 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
903596 TTCGGAAAAT
903606 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
903636 GTGCTGGTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:903871 original size:2 final size:2
Alignment explanation
Indices: 903860--903906 Score: 53
Period size: 2 Copynumber: 24.5 Consensus size: 2
903850 ACGAGAAACA
* * *
903860 AT AT -T AT AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT -T TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
903900 AT AT AT A
1 AT AT AT A
903907 AAAGTGTGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (2 bp):
AT
Found at i:904934 original size:26 final size:24
Alignment explanation
Indices: 904911--904965 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
904901 ACATAATACG
904911 ATATAAAAAATAATATATTTAATAA
1 ATAT-AAAAATAATATATTTAATAA
* *
904936 ATATAAAAATAATATAATAAATATA
1 ATATAAAAATAATATATTTAATA-A
904961 ATATA
1 ATATA
904966 TTAATATATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 17 0.63
25 10 0.37
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
ATATAAAAATAATATATTTAATAA
Found at i:904984 original size:17 final size:18
Alignment explanation
Indices: 904957--905030 Score: 68
Period size: 19 Copynumber: 4.2 Consensus size: 18
904947 ATATAATAAA
904957 TATAATATATTAATATATT
1 TATAAT-TATTAATATATT
*
904976 TAT-TTTATT--TATATT
1 TATAATTATTAATATATT
904991 TATAATT-TTAATATATT
1 TATAATTATTAATATATT
*
905008 TAATAATTTATT-TTATATT
1 T-ATAA-TTATTAATATATT
905027 TATA
1 TATA
905031 TCTTTAACTC
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
15 11 0.24
16 2 0.04
17 11 0.24
18 8 0.17
19 12 0.26
20 2 0.04
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TATAATTATTAATATATT
Found at i:904990 original size:6 final size:6
Alignment explanation
Indices: 904962--905031 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
904952 ATAAATATAA
* *
904962 TATATT AATATAT T-TATT T-TATT TATATT TATAATT T-TA-A TATATT
1 TATATT TATAT-T TATATT TATATT TATATT TAT-ATT TATATT TATATT
905008 TAATAATT TAT-TT TATATT TATAT
1 T-AT-ATT TATATT TATATT TATAT
905032 CTTTAACTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
4 1 0.02
5 15 0.29
6 23 0.44
7 9 0.17
8 4 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
TATATT
Found at i:905000 original size:18 final size:18
Alignment explanation
Indices: 904977--905030 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
904967 TAATATATTT
904977 ATTTTATTTATATTTATA
1 ATTTTATTTATATTTATA
*
904995 ATTTTA-ATATATTTAATA
1 ATTTTATTTATATTT-ATA
905013 A-TTTATTTTATATTTATA
1 ATTTTA-TTTATATTTATA
905031 TCTTTAACTC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 11 0.35
18 13 0.42
19 7 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTATTTATATTTATA
Found at i:905684 original size:24 final size:25
Alignment explanation
Indices: 905634--905688 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
905624 TGATTTTTTT
* * * *
905634 ATTTTTAAATTTATTTGTTTATTTA
1 ATTTTTAAATTTAATTATTAATGTA
905659 ATTTTTAAA-TTAATTATTAATGTA
1 ATTTTTAAATTTAATTATTAATGTA
905683 ATTTTT
1 ATTTTT
905689 CCCATAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.64
Consensus pattern (25 bp):
ATTTTTAAATTTAATTATTAATGTA
Found at i:905785 original size:16 final size:16
Alignment explanation
Indices: 905764--905794 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
905754 TAATTAATAA
*
905764 TAATATTTTATATTTT
1 TAATATTTAATATTTT
905780 TAATATTTAATATTT
1 TAATATTTAATATTT
905795 ATTTTATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TAATATTTAATATTTT
Found at i:905812 original size:27 final size:26
Alignment explanation
Indices: 905767--905844 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 26
905757 TTAATAATAA
*
905767 TATTTTATATT-TTTAATATTTAATATT
1 TATTTTAT-TTATTTAATATTTAA-AAT
*
905794 TATTTTATTTATTTGATATTTAAAAT
1 TATTTTATTTATTTAATATTTAAAAT
*
905820 T-TTTTATTTATATATAATATATAAA
1 TATTTTATTTAT-T-TAATATTTAAA
905845 TATATATAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
25 10 0.23
26 6 0.14
27 28 0.64
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (26 bp):
TATTTTATTTATTTAATATTTAAAAT
Found at i:906104 original size:2 final size:2
Alignment explanation
Indices: 906097--906126 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
906087 TTACTCAGTT
906097 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
906127 CATACGTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:914245 original size:17 final size:16
Alignment explanation
Indices: 914225--914272 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
914215 TTATAATTAT
*
914225 ATTTAAAATATTATATA
1 ATTTAAAAAATTA-ATA
914242 ATTTAAAAAATTAAT-
1 ATTTAAAAAATTAATA
* *
914257 ATTTTAATAATTAATA
1 ATTTAAAAAATTAATA
914273 TATTATATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 13 0.48
16 2 0.07
17 12 0.44
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTTAAAAAATTAATA
Found at i:914307 original size:26 final size:26
Alignment explanation
Indices: 914257--914308 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
914247 AAAAATTAAT
914257 ATTTTAATAATTAATATATTATATAA
1 ATTTTAATAATTAATATATTATATAA
*
914283 ATTTTAATATATTTTATATATTATAT
1 ATTTTAATA-A-TTAATATATTATAT
914309 TATATAATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 9 0.39
27 1 0.04
28 13 0.57
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTTTAATAATTAATATATTATATAA
Found at i:914312 original size:19 final size:18
Alignment explanation
Indices: 914201--914326 Score: 59
Period size: 17 Copynumber: 7.2 Consensus size: 18
914191 TTTAATAATT
*
914201 TATATATGTT-TATATTA
1 TATATATTTTATATATTA
* *
914218 TAATTATATTTAAAATATTA
1 T-A-TATATTTTATATATTA
* * *
914238 TATA-ATTTAAAAAATTA
1 TATATATTTTATATATTA
*
914255 -ATAT-TTTAATA-ATTA
1 TATATATTTTATATATTA
* * *
914270 -ATATATTATATAAATTT
1 TATATATTTTATATATTA
914287 TAATATATTTTATATATTA
1 T-ATATATTTTATATATTA
* *
914306 TAT-TATATAATCATATTA
1 TATATATTTTAT-ATATTA
914324 TAT
1 TAT
914327 TTATCTAATA
Statistics
Matches: 87, Mismatches: 13, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
15 8 0.09
16 14 0.16
17 22 0.25
18 14 0.16
19 22 0.25
20 7 0.08
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (18 bp):
TATATATTTTATATATTA
Found at i:917641 original size:2 final size:2
Alignment explanation
Indices: 917634--917668 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
917624 GCAACCAAAC
917634 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
917669 CGTGCCTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:918758 original size:2 final size:2
Alignment explanation
Indices: 918745--918782 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
918735 ATTATGATAA
*
918745 AT AT AC AT AT AT AT AT AT AT AT AT AT AT -T AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
918783 TTAGTTGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 30 0.94
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:919852 original size:18 final size:17
Alignment explanation
Indices: 919829--919876 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 17
919819 AAACATTATT
919829 TATATATAATTTAT-AA
1 TATATATAATTTATAAA
*
919845 TATATATATATATATAAA
1 TATATATA-ATTTATAAA
919863 TATTAATATAATTT
1 TA-T-ATATAATTT
919877 TTTTTAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 8 0.31
17 5 0.19
18 4 0.15
19 4 0.15
20 5 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATATATAATTTATAAA
Found at i:920165 original size:2 final size:2
Alignment explanation
Indices: 920158--920188 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
920148 GAATGGGTGC
920158 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
920189 GCCTACTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:923125 original size:28 final size:28
Alignment explanation
Indices: 923093--923149 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
923083 TTACTTAGAC
* *
923093 TCAAGTGTGCGTACTAGATATTGATATA
1 TCAAGTGTGCGTACCAAATATTGATATA
923121 TCAAGTGTGCGTACCAAATATTGATATA
1 TCAAGTGTGCGTACCAAATATTGATATA
923149 T
1 T
923150 GTTCAACAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (28 bp):
TCAAGTGTGCGTACCAAATATTGATATA
Found at i:927329 original size:18 final size:19
Alignment explanation
Indices: 927287--927329 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
927277 GATGAGTTAA
* *
927287 AAATAAATAATGATATTAT
1 AAATAAAAAATGATATAAT
*
927306 AGATAAAAAAT-ATATAAT
1 AAATAAAAAATGATATAAT
927324 AAATAA
1 AAATAA
927330 TTATTGCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
AAATAAAAAATGATATAAT
Found at i:933576 original size:2 final size:2
Alignment explanation
Indices: 933569--933595 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
933559 GAACAACCAA
933569 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
933596 ATAATTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:936127 original size:17 final size:17
Alignment explanation
Indices: 936107--936183 Score: 61
Period size: 17 Copynumber: 4.4 Consensus size: 17
936097 AAGTAATTAA
936107 AATATAATATAAATTTT
1 AATATAATATAAATTTT
*
936124 AATATAATAAAAATATATT
1 AATATAATATAAAT-T-TT
*
936143 AATAT--TTTAAATTTT
1 AATATAATATAAATTTT
*
936158 ATATAATTATATAATATTTT
1 A-AT-ATAATATAA-ATTTT
936178 AA-ATAA
1 AATATAA
936184 AATTATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
15 3 0.06
16 3 0.06
17 23 0.48
18 1 0.02
19 12 0.25
20 6 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATATAATATAAATTTT
Found at i:936137 original size:28 final size:27
Alignment explanation
Indices: 936100--936183 Score: 75
Period size: 28 Copynumber: 3.1 Consensus size: 27
936090 TAGTAAAAAG
*
936100 TAATTAAAATATAATATAA-ATTTTAATA
1 TAATAAAAATAT-AT-TAATATTTTAATA
*
936128 TAATAAAAATATATTAATATTTTAAATT
1 TAATAAAAATATATTAATATTTT-AATA
* * *
936156 TTATATAATTATA-TAATATTTTAA-A
1 TAATAAAAATATATTAATATTTTAATA
936181 TAA
1 TAA
936184 AATTATAATA
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
25 2 0.04
26 5 0.11
27 16 0.34
28 24 0.51
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (27 bp):
TAATAAAAATATATTAATATTTTAATA
Found at i:936190 original size:28 final size:27
Alignment explanation
Indices: 936113--936192 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
936103 TTAAAATATA
* *
936113 ATATAA-ATTTT-AATATAATAAAAAT
1 ATATAATATTTTAAATATAATATAATT
* *
936138 ATATTAATATTTTAAATTTTATATAATT
1 ATA-TAATATTTTAAATATAATATAATT
*
936166 ATATAATATTTTAAATAAAATTATAAT
1 ATATAATATTTTAAATATAA-TATAAT
936193 AAAAATAATA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 3 0.07
26 3 0.07
27 19 0.43
28 19 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
ATATAATATTTTAAATATAATATAATT
Found at i:940055 original size:29 final size:27
Alignment explanation
Indices: 940023--940077 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
940013 TGTATTTATC
940023 ATATATTTAAATATTAATTTAAATATATA
1 ATATATTTAAA-ATT-ATTTAAATATATA
* *
940052 ATATTTTTAAAATTTTTTAAATATAT
1 ATATATTTAAAATTATTTAAATATAT
940078 TAAAAATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 11 0.46
28 3 0.12
29 10 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
ATATATTTAAAATTATTTAAATATATA
Found at i:940103 original size:20 final size:21
Alignment explanation
Indices: 940059--940106 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
940049 ATAATATTTT
* *
940059 TAAAATTTTTTAAATATATTA
1 TAAAATATTTTAAATAAATTA
940080 -AAAATATTTTAAA-AAATTA
1 TAAAATATTTTAAATAAATTA
940099 TAAAATAT
1 TAAAATAT
940107 ATGATATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAAATATTTTAAATAAATTA
Found at i:941912 original size:2 final size:2
Alignment explanation
Indices: 941905--941939 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
941895 TTTTGGCAAT
* *
941905 TA TA TA TA CA TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
941940 TGCTGTTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:950422 original size:22 final size:22
Alignment explanation
Indices: 950373--950434 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
950363 AGTTTGATTT
*
950373 AATTTT-TAATT-TATAAATAA
1 AATTTTATAATTATTTAAATAA
**
950393 AAAATTATAATTATTTAAATAA
1 AATTTTATAATTATTTAAATAA
**
950415 AATTTTATTTTTATTTAAAT
1 AATTTTATAATTATTTAAAT
950435 TAAGAAAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
20 4 0.12
21 5 0.15
22 24 0.73
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AATTTTATAATTATTTAAATAA
Found at i:951110 original size:17 final size:15
Alignment explanation
Indices: 951098--951145 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
951088 TTAATTAATT
951098 ATATTAAAAAATTAA
1 ATATTAAAAAATTAA
951113 ATATT--AAAA-TAA
1 ATATTAAAAAATTAA
951125 ATATTAAATATAA-TAA
1 ATATTAAA-A-AATTAA
951141 ATATT
1 ATATT
951146 TATTTAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.28
13 4 0.14
14 1 0.03
15 6 0.21
16 10 0.34
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATATTAAAAAATTAA
Found at i:955066 original size:2 final size:2
Alignment explanation
Indices: 955059--955084 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
955049 TTCTAAGCAA
955059 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
955085 TAATTGCTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:956114 original size:18 final size:17
Alignment explanation
Indices: 956091--956146 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 17
956081 AATAAGTGAA
956091 AAAATTTAATTTAAATAT
1 AAAATTTAATTT-AATAT
* *
956109 AAAATTTTAA-ATAATTT
1 AAAA-TTTAATTTAATAT
*
956126 AAAATTTAA-TTAATAC
1 AAAATTTAATTTAATAT
956142 AAAAT
1 AAAAT
956147 AATATTAGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 14 0.44
17 8 0.25
18 5 0.16
19 5 0.16
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAATTTAATTTAATAT
Found at i:957381 original size:3 final size:3
Alignment explanation
Indices: 957375--957409 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
957365 TTTTTTTTTA
957375 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
957410 CTTTTGAAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:961920 original size:29 final size:29
Alignment explanation
Indices: 961888--961949 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 29
961878 TTAACTTAAG
*
961888 AAAAGTCAAAGTTGAATCTTAGCAAATAA
1 AAAAATCAAAGTTGAATCTTAGCAAATAA
*
961917 AAAAATTAAAGTTGAATCTTAGCAAATAA
1 AAAAATCAAAGTTGAATCTTAGCAAATAA
961946 AAAA
1 AAAA
961950 TTGTTTTATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.56, C:0.08, G:0.11, T:0.24
Consensus pattern (29 bp):
AAAAATCAAAGTTGAATCTTAGCAAATAA
Found at i:962152 original size:2 final size:2
Alignment explanation
Indices: 962145--962201 Score: 69
Period size: 2 Copynumber: 28.0 Consensus size: 2
962135 CTTTTTACAC
* *
962145 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA CA CTA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* *
962188 CA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA
962202 ACTTGATTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
2 45 0.98
3 1 0.02
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (2 bp):
TA
Found at i:962366 original size:2 final size:2
Alignment explanation
Indices: 962359--962383 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
962349 ATAGACAATA
962359 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
962384 AAAGATTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:964529 original size:2 final size:2
Alignment explanation
Indices: 964522--964552 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
964512 AACTGTTTCT
964522 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
964553 TTCGTTTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:967380 original size:16 final size:17
Alignment explanation
Indices: 967344--967382 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
967334 AACAAAATTG
*
967344 TTATGTTTTGGGCTATAT
1 TTATATTTTGGGC-ATAT
967362 TTATATTTTGGGC-TAT
1 TTATATTTTGGGCATAT
967378 TTATA
1 TTATA
967383 AATGAATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
18 12 0.60
ACGTcount: A:0.21, C:0.05, G:0.18, T:0.56
Consensus pattern (17 bp):
TTATATTTTGGGCATAT
Found at i:970284 original size:24 final size:24
Alignment explanation
Indices: 970229--970294 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
970219 GTTTGGAAAT
*
970229 TTTTAAAATTTTTTATTTAATTAAA
1 TTTTAAAATTTATT-TTTAATTAAA
970254 -TTT--AATTTATTTTT-ATCTAAA
1 TTTTAAAATTTATTTTTAAT-TAAA
970275 TTTTAAAATTTA-TTTTAATT
1 TTTTAAAATTTATTTTTAATT
970295 TTTTTAAGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
20 2 0.06
21 7 0.20
22 10 0.29
23 5 0.14
24 11 0.31
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (24 bp):
TTTTAAAATTTATTTTTAATTAAA
Found at i:970332 original size:22 final size:23
Alignment explanation
Indices: 970307--970365 Score: 57
Period size: 25 Copynumber: 2.5 Consensus size: 23
970297 TTTAAGTTTG
970307 AATTATAATAAAACATTTTA-AA
1 AATTATAATAAAACATTTTATAA
* * *
970329 AATTTTAATATTAATATTTTATTAA
1 AATTATAATA-AAACATTTTA-TAA
*
970354 ATTTATAATAAA
1 AATTATAATAAA
970366 TTTAAATAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
22 9 0.32
23 8 0.29
24 1 0.04
25 10 0.36
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
AATTATAATAAAACATTTTATAA
Done.