genome.fa.s2621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2621
Parameters: 2 7 7 80 10 50 1000
Length:  169170

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2740--2770	15	2.1	15	93	0	53	48	16	22	12	1.80
4853--4890	13	2.9	13	96	0	67	34	18	15	31	1.92
5007--5046	22	2.0	20	85	14	55	25	20	5	50	1.68
7420--7444	13	1.9	13	100	0	50	36	16	16	32	1.90
12443--12517	36	2.1	36	100	0	150	32	13	26	28	1.94
14190--14224	2	17.5	2	100	0	70	48	0	0	51	1.00
19972--20009	18	2.1	18	85	9	51	50	2	0	47	1.15
21614--21647	17	2.0	17	88	11	52	58	0	0	41	0.98
25218--25267	16	3.1	16	73	21	59	56	0	0	44	0.99
25202--25267	32	2.0	33	88	8	100	57	0	1	40	1.08
25231--25287	18	3.1	18	78	19	55	52	0	0	47	1.00
25218--25293	16	4.5	15	71	26	55	55	0	0	44	0.99
25270--25332	17	3.8	17	80	12	60	60	0	1	38	1.07
27355--27406	12	3.8	13	74	16	52	67	1	0	30	1.02
27356--27402	15	3.2	15	82	8	53	72	2	0	25	0.96
27466--27528	25	2.6	23	76	19	56	39	0	0	60	0.97
27524--27561	19	2.0	20	89	5	60	63	2	0	34	1.09
27637--27666	15	2.0	15	93	0	51	50	0	0	50	1.00
28636--28672	16	2.2	17	90	4	58	45	2	13	37	1.58
28709--28804	37	2.6	36	80	4	111	45	5	1	47	1.32
28771--28814	22	2.0	22	86	8	63	52	2	0	45	1.13
29553--29587	18	2.0	18	88	5	54	60	5	2	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34387--34442	24	2.3	24	90	6	87	42	1	42	12	1.53
41236--41286	16	3.3	15	77	22	52	72	7	13	5	1.26
41236--41286	15	3.2	16	76	13	52	72	7	13	5	1.26
42562--42963	28	14.3	28	83	4	346	27	28	14	29	1.96
42810--43815	32	33.7	31	84	7	706	31	28	17	22	1.96
48482--48539	30	1.9	31	92	3	100	39	0	5	55	1.22
48687--48748	26	2.4	27	70	21	62	48	1	0	50	1.10
49275--49308	17	1.9	17	88	5	50	35	5	17	41	1.74
51359--51403	20	2.2	20	88	0	63	73	0	13	13	1.10
52515--52544	14	2.1	14	93	0	51	80	0	3	16	0.85
53496--53543	20	2.4	20	82	0	60	20	22	33	22	1.97
53641--53667	14	1.9	14	100	0	54	66	0	29	3	1.09
54166--54194	2	14.5	2	100	0	58	48	0	0	51	1.00
56597--56635	20	2.0	20	85	10	53	20	25	17	35	1.95
67380--67454	20	3.8	20	80	0	96	33	13	12	41	1.81
67380--67457	40	2.0	39	89	2	120	33	12	12	41	1.82
81433--81462	13	2.4	12	89	10	51	90	10	0	0	0.47
82706--83689	28	34.5	28	85	6	1160	28	30	16	23	1.97
82706--83689	57	17.2	56	85	6	1160	28	30	16	23	1.97
82703--83689	200	4.9	200	85	4	1291	28	30	16	23	1.96
88718--89536	62	13.1	62	79	6	765	27	24	18	29	1.98
89379--89505	68	1.9	68	81	3	157	32	18	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90650--90691	20	2.1	20	90	0	66	19	23	33	23	1.97
91307--91357	2	25.5	2	95	0	93	49	1	0	49	1.12
108490--108540	20	2.5	20	77	0	57	35	7	13	43	1.73
108490--108567	40	2.0	39	82	2	93	34	10	11	43	1.75
116899--117278	27	13.8	27	85	2	454	24	31	14	30	1.94
116910--118099	28	42.2	28	85	5	969	28	29	16	25	1.97
116898--117278	82	4.6	82	88	1	530	24	31	14	29	1.94
117279--118152	84	10.2	84	86	4	1086	30	28	17	23	1.97
117927--118177	32	8.2	32	74	11	140	30	27	19	23	1.98
118769--118843	20	3.8	20	76	0	78	34	12	12	41	1.79
125800--126189	59	6.5	58	81	5	393	29	23	18	28	1.98
125823--126155	121	2.8	120	85	4	440	29	25	18	26	1.98
125817--126171	180	2.0	181	86	1	505	29	24	18	27	1.98
126126--126255	66	2.0	66	83	3	163	35	18	16	29	1.93
126924--126972	20	2.5	20	79	0	62	73	0	14	12	1.10
126957--126985	13	2.1	14	93	6	51	89	0	10	0	0.48
129997--130050	16	3.4	16	76	5	56	31	0	3	64	1.11
130014--130100	16	5.4	16	76	6	77	37	4	1	56	1.28
130500--130531	2	16.0	2	100	0	64	50	0	0	50	1.00
130985--131039	18	2.9	19	81	5	76	38	0	1	60	1.08
131275--131394	60	2.0	61	93	1	206	45	7	5	41	1.54
132360--132393	10	3.1	11	84	16	52	61	0	14	23	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132704--132748	18	2.4	18	81	3	54	48	0	8	42	1.34
133120--133159	14	2.9	14	84	0	53	50	5	0	45	1.23
134713--134780	14	4.7	14	69	25	52	41	1	0	57	1.08
135378--135624	82	3.0	82	82	5	304	42	3	1	53	1.25
136036--136108	20	3.6	21	74	9	71	58	0	0	41	0.98
136037--136098	25	2.6	23	70	9	61	61	0	0	38	0.96
136062--136128	31	2.2	30	81	10	82	55	0	0	44	0.99
136053--136133	29	2.9	27	77	15	76	54	0	0	45	0.99
136572--136601	7	4.1	7	91	8	51	73	0	0	26	0.84
136572--136601	15	2.0	15	100	0	60	73	0	0	26	0.84
137826--137850	11	2.3	11	100	0	50	24	0	0	76	0.80
139340--139369	3	10.0	3	100	0	60	33	0	0	66	0.92
142710--142754	23	1.9	24	81	4	56	44	6	2	46	1.42
143020--143065	17	2.7	18	86	6	60	50	2	0	47	1.13
143555--143626	33	2.2	33	82	9	85	20	4	1	73	1.07
145552--145577	2	13.0	2	100	0	52	50	0	0	50	1.00
147470--147530	27	2.2	28	82	5	72	26	6	1	65	1.26
148096--148138	3	14.3	3	100	0	86	34	0	0	65	0.93
148598--148625	2	14.0	2	100	0	56	50	0	0	50	1.00
149853--149891	20	2.0	20	89	0	60	43	0	0	56	0.99
150382--150414	11	3.0	11	86	13	50	24	0	0	75	0.80
150376--150410	10	3.4	10	88	7	52	17	2	0	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150531--150585	18	2.8	20	76	13	62	38	0	0	61	0.96
152460--152507	14	3.3	14	82	8	60	31	0	4	64	1.12
152742--152789	13	3.6	13	73	15	53	33	0	2	64	1.05
157314--157358	6	7.5	6	97	0	63	31	17	24	26	1.97
158026--158063	14	2.5	15	87	12	60	26	26	26	21	1.99
166103--166144	20	2.1	20	95	0	75	47	16	9	26	1.77
166635--166673	3	13.0	3	100	0	78	66	0	0	33	0.92
167395--167485	5	19.0	5	65	17	50	53	0	0	46	1.00
168295--168331	17	2.1	18	90	5	58	45	0	2	51	1.15

Tables:   1

The End!