genome.fa.s2622.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2622
Parameters: 2 7 7 80 10 50 1000
Length:  40664

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
828--880	26	2.0	26	92	0	88	41	0	28	30	1.56
913--937	13	1.9	13	100	0	50	32	4	8	56	1.47
5801--5863	27	2.3	28	81	8	76	47	1	0	50	1.10
9020--9057	20	1.9	20	88	0	58	50	7	2	39	1.46
16614--16672	9	6.9	9	71	11	52	15	42	0	42	1.46
16591--16704	42	2.7	42	86	1	149	14	40	0	45	1.44
19975--20008	17	1.9	17	88	5	50	79	0	14	5	0.91
19976--20023	23	2.1	23	84	7	62	81	2	10	6	0.95
20817--20889	36	2.0	36	100	0	146	47	2	21	27	1.64
21361--21425	21	3.6	19	73	26	70	44	15	12	27	1.82
21379--21404	13	2.0	13	100	0	52	38	15	15	30	1.88
21361--21425	34	2.0	33	93	6	114	44	15	12	27	1.82
24893--24923	15	2.1	15	93	0	53	48	16	22	12	1.80
26939--26990	20	2.6	20	90	6	79	23	13	15	48	1.80
26979--27016	13	2.9	13	88	0	58	36	18	13	31	1.89
27128--27173	21	2.2	20	81	11	58	32	19	4	43	1.71
29541--29605	21	3.6	19	73	26	70	44	15	12	27	1.82
29559--29584	13	2.0	13	100	0	52	38	15	15	30	1.88
29541--29605	34	2.0	33	93	6	114	44	15	12	27	1.82
31463--31524	21	3.0	21	83	11	83	19	12	3	64	1.41
31989--32013	3	8.3	3	100	0	50	32	32	0	36	1.58
33936--34171	92	2.6	92	91	0	366	25	24	13	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34576--34686	47	2.4	46	85	4	152	18	19	13	47	1.82
34644--34961	80	4.0	81	75	8	317	23	21	12	42	1.87
34666--34961	160	1.8	162	80	7	352	24	21	11	42	1.86
34905--34996	35	2.6	35	86	5	114	23	21	7	46	1.77
34827--35077	116	2.2	115	81	4	272	24	21	12	42	1.87
38047--38079	16	2.0	17	94	5	59	24	0	6	69	1.10
38380--38426	9	4.8	10	78	21	55	80	0	19	0	0.70
38384--38426	10	4.6	9	81	18	52	81	0	18	0	0.69
38378--38425	18	2.6	19	83	12	64	79	0	20	0	0.74
39432--39861	145	3.0	144	91	3	643	24	19	20	36	1.95

Tables:   1

The End!