Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2623
Parameters: 2 7 7 80 10 50 1000
Length:  43066

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1080--1132
1
53.0
1
88
0
79
0
1
3
94
0.37
5760--5855
26
3.5
25
72
16
66
56
2
1
40
1.18
5764--5813
10
5.2
10
73
7
50
58
2
0
40
1.10
5778--5825
20
2.5
20
83
10
64
60
2
0
37
1.09
8021--8095
16
4.7
16
72
18
66
58
2
1
37
1.20
8021--8095
32
2.3
34
80
13
95
58
2
1
37
1.20
19707--19745
18
2.1
19
85
4
53
38
2
0
58
1.12
19875--19946
32
2.2
33
80
7
85
16
11
5
66
1.40
20198--20235
19
2.1
18
90
5
58
71
18
2
7
1.23
20585--20632
25
1.9
25
87
8
71
70
2
2
25
1.09
22356--22401
23
2.0
22
84
12
58
65
0
0
34
0.93
28716--28745
16
1.9
15
93
6
51
33
16
13
36
1.88
32810--33025
34
6.4
34
88
1
292
24
7
27
40
1.83
32810--33027
67
3.2
67
88
1
319
24
7
27
40
1.82
33327--33386
19
3.1
20
85
7
88
31
18
18
31
1.95
37457--37674
34
6.5
34
88
1
296
24
7
27
40
1.82
37457--37676
67
3.3
67
88
1
323
24
7
27
40
1.82
39208--39232
13
1.9
13
100
0
50
32
4
0
64
1.12
40766--40800
17
2.1
17
89
5
54
60
0
0
40
0.97
41158--41212
27
2.0
27
89
3
83
70
0
0
29
0.87
41153--41249
16
5.8
17
75
15
76
61
1
0
37
1.03
41237--41262
13
2.0
13
100
0
52
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42463--42505
20
2.2
20
100
0
86
30
0
9
60
1.28
42816--42879
30
2.1
30
82
11
76
50
1
1
46
1.20
42816--42872
16
3.6
16
77
15
57
49
0
1
49
1.11

Tables:   1

The End!