Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2627
Parameters: 2 7 7 80 10 50 1000
Length:  74368

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2599--2680
28
2.9
29
80
8
89
25
30
15
28
1.96
3658--3695
18
2.1
18
85
14
51
31
7
0
60
1.25
4244--4282
13
3.1
13
89
10
55
0
15
0
84
0.62
4244--4278
18
1.9
18
100
0
70
0
14
0
85
0.59
5619--5692
36
2.0
37
86
2
105
54
5
4
36
1.43
11088--11139
27
2.0
27
84
3
70
30
11
28
28
1.92
13594--13730
52
2.7
50
81
9
163
43
12
15
28
1.83
13768--13818
20
2.5
20
87
0
75
33
13
9
43
1.77
15170--15210
21
1.9
22
85
5
57
46
2
12
39
1.54
16180--16232
22
2.4
22
90
0
79
39
3
1
54
1.29
17251--17369
30
4.0
30
73
5
107
49
3
6
40
1.46
17375--17413
20
2.0
20
94
0
69
58
0
0
41
0.98
17711--17740
3
10.0
3
100
0
60
66
0
0
33
0.92
17792--17825
14
2.2
16
90
10
54
58
0
2
38
1.13
17792--17831
16
2.5
15
88
8
53
57
0
5
37
1.21
31939--31984
4
11.5
4
85
0
65
45
23
4
26
1.71
34236--34572
166
2.0
171
84
5
443
29
15
15
39
1.88
39776--39826
6
8.2
6
87
8
57
58
0
0
41
0.98
39764--39824
24
2.5
24
81
5
70
55
0
0
44
0.99
39782--39824
8
5.4
8
88
0
59
55
0
0
44
0.99
39775--39818
14
3.1
14
86
0
61
54
0
0
45
0.99
40156--40192
18
2.0
19
89
5
58
51
5
10
32
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41274--41315
21
2.0
21
86
9
59
33
23
11
30
1.91
45254--45303
24
2.1
24
88
7
75
50
18
16
16
1.79
51875--51909
2
17.5
2
100
0
70
48
0
0
51
1.00
52771--52832
16
3.9
16
80
0
79
51
3
1
43
1.27
52752--52797
22
2.0
22
83
4
56
50
2
2
45
1.26
52770--52839
32
2.2
32
79
2
88
48
4
1
45
1.30
53524--53568
21
2.0
23
83
8
58
13
6
0
80
0.91
58703--58742
19
2.1
19
100
0
80
55
10
10
25
1.64
59872--59896
12
2.1
12
100
0
50
48
8
8
36
1.62
62246--62284
20
1.9
21
89
5
62
43
5
2
48
1.38
63377--63408
15
2.2
14
94
5
55
62
3
0
34
1.11
63411--63466
10
5.6
10
77
14
62
30
0
1
67
1.01
63413--63462
15
3.4
15
86
13
68
30
0
2
68
1.01
64599--64630
2
16.0
2
100
0
64
50
0
0
50
1.00
64828--64870
20
2.1
21
80
20
56
58
0
0
41
0.98
65386--65475
21
4.3
21
76
9
76
34
3
24
37
1.72
65513--65543
16
1.9
16
100
0
62
45
6
12
35
1.68
66577--66603
13
2.1
13
100
0
54
29
14
14
40
1.86
66589--66662
20
3.8
20
87
8
107
33
13
16
36
1.88
71827--71866
13
3.1
13
96
0
71
32
15
12
40
1.84

Tables:   1

The End!