Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold263
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1338270
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 1 of 10
Found at i:8091 original size:21 final size:21
Alignment explanation
Indices: 7287--8993 Score: 1060
Period size: 21 Copynumber: 79.9 Consensus size: 21
7277 AACCCGAGTT
* * *
7287 AACCCGAAACCCGAAACCCGA
1 AACCCCAAACCCCAAACCCCA
* *
7308 AACCTCGAAACCCGCAATACCCGA
1 AACC-CCAAACCC-CAA-ACCCCA
* *
7332 AACCCGAAATCCCGAAA--CCA
1 AACCCCAAA-CCCCAAACCCCA
** * *
7352 AACCTGAAACCCGAAACCCTGA
1 AACCCCAAACCCCAAACCC-CA
* * *
7374 AA-CCCGAACCCTGAAACCCGA
1 AACCCCAAACCC-CAAACCCCA
* * * * *
7395 AACCCGAAATCCGATACCCGA
1 AACCCCAAACCCCAAACCCCA
* * * *
7416 AACCCGAAACCCGACACCCGA
1 AACCCCAAACCCCAAACCCCA
* * *
7437 AACCCGAAACCCGAAACCCGAA
1 AACCCCAAACCCCAAACCC-CA
* * *
7459 AACCCGAAACCCGAAACCCTA
1 AACCCCAAACCCCAAACCCCA
** *
7480 AA-CCGGAACCCCGAAA-CCGA
1 AACCCCAAACCCC-AAACCCCA
** * *
7500 AACCCTGAACCGCAGAAACCCGA
1 AACCCCAAACC-C-CAAACCCCA
* *
7523 AACCCGAAACCCGAATACCCCGA
1 AACCCCAAACCCCAA-ACCCC-A
* * *
7546 AACTCCGAAACCCGAAACCCGA
1 AAC-CCCAAACCCCAAACCCCA
* * *
7568 AACCCGAAACCCGAAACCCGAA
1 AACCCCAAACCCCAAACCC-CA
* * *
7590 AACCCGAAACCCGTATAACCCGA
1 AACCCCAAACCC-CA-AACCCCA
* * * *
7613 AACCCGAAAACCGAAACCCCG
1 AACCCCAAACCCCAAACCCCA
* *
7634 AACTCTCCGAAACCCTGAAACCCGA
1 AAC-C-CC-AAACCC-CAAACCCCA
* * *
7659 AACCCGAAA-CCGAAACCCGA
1 AACCCCAAACCCCAAACCCCA
* *
7679 AACCCGAAACCTCCGAATCACCCGA
1 AACCCCAAACC-CC-AA--ACCCCA
*
7704 AACCCGC--ACCCTCGAAA-CCGA
1 AACCC-CAAACCC-C-AAACCCCA
* * *
7725 AACCCGAAACCCGC-CACCCGATA
1 AACCCCAAACCC-CAAACCC--CA
* * *
7748 AACCCGAAACCCGAACACCCTGA
1 AACCCCAAACCCCAA-ACCC-CA
* * *
7771 AACCCGAAACGCCGTAAA-CCCG
1 AACCCCAAAC-CC-CAAACCCCA
* * *
7793 AACCCGAAACTCCGAAACCCGA
1 AACCCCAAAC-CCCAAACCCCA
*
7815 AACTCCCAGAAAACCCGAAA-CCCA
1 AAC-CCC---AAACCCCAAACCCCA
* *
7839 AACCCGAAA-CCCAAACCACAA
1 AACCCCAAACCCCAAACC-CCA
7860 AACCCTC-AACCCCAAACCCCA
1 AACCC-CAAACCCCAAACCCCA
7881 AACCCGCAAACCCCAAACCCCA
1 AACCC-CAAACCCCAAACCCCA
* * *
7903 AA-CCCGAACCCGAAA-CCGA
1 AACCCCAAACCCCAAACCCCA
* * *
7922 AACCTCGAAACCCGAACACCCGA
1 AACC-CCAAACCCCAA-ACCCCA
* * *
7945 AA-CCGAAACCCGAAACCTCGA
1 AACCCCAAACCCCAAACC-CCA
* * * *
7966 CACCCGAAA--CGAAACCCGA
1 AACCCCAAACCCCAAACCCCA
* * *
7985 AACCCGAAACCCGAAA--CGA
1 AACCCCAAACCCCAAACCCCA
* *
8004 AA-CCGAAA--CCAAACCCGA
1 AACCCCAAACCCCAAACCCCA
* * *
8022 AA-CCGAAACCCGAAACCCAA
1 AACCCCAAACCCCAAACCCCA
* *
8042 AACCCCGAAAAACCCAAACCCACCC
1 AACCCC--AAACCCCAAA-CC-CCA
*
8067 AACCCCCAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8088 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8109 AACCCCAAACCCCAAAACCCCA
1 AACCCCAAACCCC-AAACCCCA
*
8131 AACCCCAAAACCCCAAACCCGA
1 AACCCC-AAACCCCAAACCCCA
* *
8153 AACCCCAAACCCTAAACCCTA
1 AACCCCAAACCCCAAACCCCA
* * *
8174 AA-CCCGAACCCTAAACCCGA
1 AACCCCAAACCCCAAACCCCA
* *
8194 AACCCGAAACCCGAAA-CCCA
1 AACCCCAAACCCCAAACCCCA
* *
8214 AACCCGAAACCCGAAA-CCCA
1 AACCCCAAACCCCAAACCCCA
*
8234 AAACCC-AA-CCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8253 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8274 AACCCCAAACCCCAAA-CCCA
1 AACCCCAAACCCCAAACCCCA
8294 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8315 TAA-CCCAAACCCCAAACCCCA
1 -AACCCCAAACCCCAAACCCCA
8336 AACCCCAAA-CCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
*
8356 AACCCCAAACCCCAAACACCA
1 AACCCCAAACCCCAAACCCCA
8377 AA-CCCAAACCCCAAAACCCCA
1 AACCCCAAACCCC-AAACCCCA
8398 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8419 AACCCCAAACCCCCAAACCCCA
1 AACCCCAAA-CCCCAAACCCCA
8441 AACCCCAAA-CCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8461 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
*
8482 AAACCCAAA-CCCAAACCCCAACA
1 AACCCCAAACCCCAAA-CCC--CA
8505 AACCCCAAACCCCAAACCCC-
1 AACCCCAAACCCCAAACCCCA
8525 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8546 AACCCCAAACCCC-AACCCCA
1 AACCCCAAACCCCAAACCCCA
*
8566 AACCCCAAACCCCAAAACCCTA
1 AACCCCAAACCCC-AAACCCCA
8588 AACCCCAAAAACCCCAAACCCC-
1 AACCCC--AAACCCCAAACCCCA
8610 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
*
8631 AACCCCAAA-CCCAAACCCTA
1 AACCCCAAACCCCAAACCCCA
* *
8651 AACCCCTAAAACCCCGAACCCCG
1 AACCCC--AAACCCCAAACCCCA
* * *
8674 AACCCCGAACCCCGAACCCCG
1 AACCCCAAACCCCAAACCCCA
* *
8695 AACCCCGAACCCTAAACCCCA
1 AACCCCAAACCCCAAACCCCA
8716 AACCCCAAACCCCAAACCCCA
1 AACCCCAAACCCCAAACCCCA
***
8737 AACCCCAAACCCCAAACTATA
1 AACCCCAAACCCCAAACCCCA
* * ** *
8758 AACCCTAAA-CCCTATTCCTA
1 AACCCCAAACCCCAAACCCCA
*
8778 AACCCTC-AACCCTAAACCCTC-
1 AACCC-CAAACCCCAAACCC-CA
* *
8799 AACCCTAAACCCTC-AACCCCT
1 AACCCCAAACCC-CAAACCCCA
*
8820 AACCCTAAAACCCCAAACCCCTGA
1 AACCC-CAAACCCCAAACCCC--A
* **
8844 AACCCCAAACCCCGAACCCTG
1 AACCCCAAACCCCAAACCCCA
* * ** *
8865 AACCCTTATACCTAAAACCTCA
1 AACCC-CAAACCCCAAACCCCA
* * * *
8887 AACCCAAAACCTCAATCCTCTA
1 AACCCCAAACCCCAAACC-CCA
*
8909 AACCCTC-AACCCTAAACCCTC-
1 AACCC-CAAACCCCAAACCC-CA
* *
8930 AACCCTAAACCCTC-AACCCCT
1 AACCCCAAACCC-CAAACCCCA
*
8951 AACCCTAAAACCCCAAACCCCTGA
1 AACCC-CAAACCCCAAACCCC--A
*
8975 AACCCCAAACCCCGAACCC
1 AACCCCAAACCCCAAACCC
8994 TGAACCCTTA
Statistics
Matches: 1411, Mismatches: 159, Indels: 230
0.78 0.09 0.13
Matches are distributed among these distances:
16 4 0.00
18 22 0.02
19 44 0.03
20 286 0.20
21 504 0.36
22 266 0.19
23 164 0.12
24 81 0.06
25 36 0.03
26 4 0.00
ACGTcount: A:0.41, C:0.48, G:0.07, T:0.04
Consensus pattern (21 bp):
AACCCCAAACCCCAAACCCCA
Found at i:8760 original size:14 final size:14
Alignment explanation
Indices: 7287--8993 Score: 1060
Period size: 14 Copynumber: 119.9 Consensus size: 14
7277 AACCCGAGTT
* *
7287 AACCCGAAACCCGA
1 AACCCCAAACCCCA
* *
7301 AACCCGAAACCTCGA
1 AACCCCAAACC-CCA
*
7316 AACCCGCAATACCCGA
1 AACCC-CAA-ACCCCA
* *
7332 AACCCGAAATCCCGA
1 AACCCCAAA-CCCCA
**
7347 AA--CCAAACCTGA
1 AACCCCAAACCCCA
* *
7359 AACCCGAAACCCTGA
1 AACCCCAAACCC-CA
* *
7374 AA-CCCGAACCCTGA
1 AACCCCAAACCC-CA
* *
7388 AACCCGAAACCCGA
1 AACCCCAAACCCCA
* * * *
7402 AATCCGATACCCGA
1 AACCCCAAACCCCA
* *
7416 AACCCGAAACCCGA
1 AACCCCAAACCCCA
* * *
7430 CACCCGAAACCCGA
1 AACCCCAAACCCCA
* *
7444 AACCCGAAACCCGAA
1 AACCCCAAACCC-CA
* *
7459 AACCCGAAACCCGA
1 AACCCCAAACCCCA
* **
7473 AACCCTAAA-CCGG
1 AACCCCAAACCCCA
*
7486 AACCCCGAAA-CCGA
1 AACCCC-AAACCCCA
** *
7500 AACCCTGAACCGCAGA
1 AACCCCAAACC-C-CA
* *
7516 AACCCGAAACCCGA
1 AACCCCAAACCCCA
*
7530 AACCCGAATACCCCGA
1 AACCCCAA-ACCCC-A
* *
7546 AACTCCGAAACCCGA
1 AAC-CCCAAACCCCA
* *
7561 AACCCGAAACCCGA
1 AACCCCAAACCCCA
* *
7575 AACCCGAAACCCGAA
1 AACCCCAAACCC-CA
* *
7590 AACCCGAAACCCGTA
1 AACCCCAAACCC-CA
* *
7605 TAACCCGAAACCCGA
1 -AACCCCAAACCCCA
* * *
7620 AAACCGAAACCCCG
1 AACCCCAAACCCCA
*
7634 AACTCTCCGAAACCCTGA
1 AAC-C-CC-AAACCC-CA
* *
7652 AACCCGAAACCCGA
1 AACCCCAAACCCCA
* *
7666 AA-CCGAAACCCGA
1 AACCCCAAACCCCA
*
7679 AACCCGAAACCTCCGA
1 AACCCCAAACC-CC-A
*
7695 ATCACCCGAAACCCGC-
1 A--ACCCCAAACCC-CA
*
7711 -ACCCTCGAAA-CCGA
1 AACCC-C-AAACCCCA
*
7725 AACCCGAAACCCGC-
1 AACCCCAAACCC-CA
* * *
7739 CACCCGATAAACCCGA
1 AACCC--CAAACCCCA
* *
7755 AACCCGAACACCCTGA
1 AACCCCAA-ACCC-CA
* *
7771 AACCCGAAACGCCGTA
1 AACCCCAAAC-CC-CA
* *
7787 AA-CCCGAACCCGA
1 AACCCCAAACCCCA
* *
7800 AACTCCGAAACCCGA
1 AAC-CCCAAACCCCA
*
7815 AACTCCCAGAAAACCCGA
1 AAC-CCC---AAACCCCA
*
7833 AA-CCCAAACCCGA
1 AACCCCAAACCCCA
*
7846 AA-CCCAAACCACAA
1 AACCCCAAACC-CCA
7860 AACCCTC-AACCCCA
1 AACCC-CAAACCCCA
7874 AACCCCAAACCCGCA
1 AACCCCAAACCC-CA
7889 AACCCCAAACCCCA
1 AACCCCAAACCCCA
* *
7903 AA-CCCGAACCCGA
1 AACCCCAAACCCCA
* *
7916 AA-CCGAAACCTCGA
1 AACCCCAAACC-CCA
* *
7930 AACCCGAACACCCGA
1 AACCCCAA-ACCCCA
* *
7945 AA-CCGAAACCCGA
1 AACCCCAAACCCCA
* * *
7958 AACCTCGACACCCGA
1 AACC-CCAAACCCCA
* *
7973 AA--CGAAACCCGA
1 AACCCCAAACCCCA
* *
7985 AACCCGAAACCCGA
1 AACCCCAAACCCCA
* *
7999 AA--CGAAA-CCGA
1 AACCCCAAACCCCA
*
8010 AA--CCAAACCCGA
1 AACCCCAAACCCCA
* *
8022 AA-CCGAAACCCGA
1 AACCCCAAACCCCA
*
8035 AACCCAAAACCCCGAA
1 AACCCCAAACCCC--A
* *
8051 AAACCCAAACCCACCC
1 AACCCCAAA-CC-CCA
*
8067 AACCCCCAACCCCA
1 AACCCCAAACCCCA
8081 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8095 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8109 AACCCCAAACCCCAA
1 AACCCCAAACCCC-A
8124 AACCCCAAACCCCAA
1 AACCCCAAACCCC-A
*
8139 AACCCCAAACCCGA
1 AACCCCAAACCCCA
*
8153 AACCCCAAACCCTA
1 AACCCCAAACCCCA
* *
8167 AACCCTAAA-CCCG
1 AACCCCAAACCCCA
* *
8180 AACCCTAAACCCGA
1 AACCCCAAACCCCA
* *
8194 AACCCGAAACCCGA
1 AACCCCAAACCCCA
*
8208 AA-CCCAAACCCGA
1 AACCCCAAACCCCA
*
8221 AACCCGAAA-CCCA
1 AACCCCAAACCCCA
*
8234 AAACCC-AA-CCCA
1 AACCCCAAACCCCA
8246 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8260 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8274 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8288 AA-CCCAAACCCCA
1 AACCCCAAACCCCA
8301 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8315 TAA-CCCAAACCCCA
1 -AACCCCAAACCCCA
8329 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8343 AA-CCCAAACCCCA
1 AACCCCAAACCCCA
8356 AACCCCAAACCCCA
1 AACCCCAAACCCCA
*
8370 AACACCAAA-CCCA
1 AACCCCAAACCCCA
8383 AACCCCAAAACCCCA
1 AACCCC-AAACCCCA
8398 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8412 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8426 AACCCCCAAACCCCA
1 AA-CCCCAAACCCCA
8441 AACCCCAAA-CCCA
1 AACCCCAAACCCCA
8454 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8468 AACCCCAAACCCCA
1 AACCCCAAACCCCA
*
8482 AAACCCAAA-CCCA
1 AACCCCAAACCCCA
8495 AACCCCAACAAACCCCA
1 AA-CCC--CAAACCCCA
8512 AACCCCAAACCCC-
1 AACCCCAAACCCCA
8525 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8539 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8553 AACCCC-AACCCCA
1 AACCCCAAACCCCA
8566 AACCCCAAACCCCAA
1 AACCCCAAACCCC-A
*
8581 AACCCTAAACCCCAAA
1 AACCCCAAACCCC--A
8597 AACCCCAAACCCC-
1 AACCCCAAACCCCA
8610 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8624 AACCCCAAACCCCA
1 AACCCCAAACCCCA
*
8638 AA-CCCAAACCCTA
1 AACCCCAAACCCCA
*
8651 AACCCCTAAAACCCCG
1 AACCCC--AAACCCCA
* *
8667 AACCCCGAACCCCG
1 AACCCCAAACCCCA
* *
8681 AACCCCGAACCCCG
1 AACCCCAAACCCCA
* *
8695 AACCCCGAACCCTA
1 AACCCCAAACCCCA
8709 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8723 AACCCCAAACCCCA
1 AACCCCAAACCCCA
8737 AACCCCAAACCCCA
1 AACCCCAAACCCCA
*** *
8751 AACTATAAACCCTA
1 AACCCCAAACCCCA
* ** *
8765 AA-CCCTATTCCTA
1 AACCCCAAACCCCA
*
8778 AACCCTC-AACCCTA
1 AACCC-CAAACCCCA
*
8792 AACCCTC-AACCCTA
1 AACCC-CAAACCCCA
*
8806 AACCCTC-AACCCCT
1 AACCC-CAAACCCCA
*
8820 AACCCTAAAACCCCA
1 AACCC-CAAACCCCA
8835 AACCCCTGAAACCCCA
1 AACCCC--AAACCCCA
* **
8851 AACCCCGAACCCTG
1 AACCCCAAACCCCA
* * **
8865 AACCCTTATACCTAA
1 AACCC-CAAACCCCA
* *
8880 AACCTCAAACCCAA
1 AACCCCAAACCCCA
* * *
8894 AACCTCAATCCTCTA
1 AACCCCAAACC-CCA
*
8909 AACCCTC-AACCCTA
1 AACCC-CAAACCCCA
*
8923 AACCCTC-AACCCTA
1 AACCC-CAAACCCCA
*
8937 AACCCTC-AACCCCT
1 AACCC-CAAACCCCA
*
8951 AACCCTAAAACCCCA
1 AACCC-CAAACCCCA
8966 AACCCCTGAAACCCCA
1 AACCCC--AAACCCCA
*
8982 AACCCCGAACCC
1 AACCCCAAACCC
8994 TGAACCCTTA
Statistics
Matches: 1449, Mismatches: 144, Indels: 200
0.81 0.08 0.11
Matches are distributed among these distances:
11 10 0.01
12 39 0.03
13 238 0.16
14 701 0.48
15 257 0.18
16 154 0.11
17 24 0.02
18 26 0.02
ACGTcount: A:0.41, C:0.48, G:0.07, T:0.04
Consensus pattern (14 bp):
AACCCCAAACCCCA
Found at i:8771 original size:7 final size:7
Alignment explanation
Indices: 5--8753 Score: 8067
Period size: 7 Copynumber: 1196.6 Consensus size: 7
1 GCCT
5 AAACCCG
1 AAACCCG
* *
12 AAA-ACT
1 AAACCCG
18 AAACCCG
1 AAACCCG
25 -AACCCG
1 AAACCCG
31 AAACCCG
1 AAACCCG
*
38 -AACCAG
1 AAACCCG
44 AAACCCG
1 AAACCCG
51 CAAAACTCCG
1 --AAAC-CCG
61 AAAACCCG
1 -AAACCCG
69 AAACCCG
1 AAACCCG
76 AAAACCCG
1 -AAACCCG
84 AAACCCG
1 AAACCCG
91 AAA-CCG
1 AAACCCG
97 -AA-CCG
1 AAACCCG
102 AAACCCG
1 AAACCCG
109 AAA--CG
1 AAACCCG
114 AAACCCGG
1 AAACCC-G
122 AAACCTCG
1 AAACC-CG
*
130 AAAACCG
1 AAACCCG
137 AAACCCG
1 AAACCCG
*
144 AAACACG
1 AAACCCG
151 AAA-CCG
1 AAACCCG
157 AAACCCG
1 AAACCCG
164 AAACCCG
1 AAACCCG
171 AATAAATCCCCG
1 ---AAA--CCCG
*
183 AACCCCG
1 AAACCCG
190 AAAACCCG
1 -AAACCCG
198 ACAACCCG
1 A-AACCCG
206 AAACCCG
1 AAACCCG
213 AAACCCG
1 AAACCCG
220 AAAACCCG
1 -AAACCCG
228 AAACCCG
1 AAACCCG
235 AAACCCG
1 AAACCCG
242 AAACCCCG
1 AAA-CCCG
250 AAAACCCG
1 -AAACCCG
258 AAA-CCG
1 AAACCCG
264 AAA-CCG
1 AAACCCG
*
270 CAACCCGTG
1 AAACCC--G
279 AAACCCG
1 AAACCCG
*
286 AATACTCG
1 AA-ACCCG
294 AAACCCG
1 AAACCCG
301 AAAACCCG
1 -AAACCCG
309 AAACCCG
1 AAACCCG
316 AAACCCG
1 AAACCCG
323 AAAACCCG
1 -AAACCCG
*
331 TAACCCG
1 AAACCCG
*
338 AAAACCG
1 AAACCCG
345 AAACCCG
1 AAACCCG
352 -AACCCG
1 AAACCCG
358 AAACCCG
1 AAACCCG
365 -AACCCG
1 AAACCCG
371 -AACTCCG
1 AAAC-CCG
378 AAACCTC-
1 AAACC-CG
385 AAACCCG
1 AAACCCG
392 -AACCCG
1 AAACCCG
*
398 -AACCGG
1 AAACCCG
404 AAAACCCG
1 -AAACCCG
412 AAACCCG
1 AAACCCG
419 AAACCCTG
1 AAACCC-G
*
427 CAACCCG
1 AAACCCG
434 AAACCCG
1 AAACCCG
441 TAAACCCG
1 -AAACCCG
449 -AACCCG
1 AAACCCG
455 AAACCCG
1 AAACCCG
462 AAACTCCCG
1 AAA--CCCG
471 CAAAACCCG
1 --AAACCCG
*
480 AAACCCT
1 AAACCCG
487 AAACCCG
1 AAACCCG
494 AAA-CCG
1 AAACCCG
500 AAACCCG
1 AAACCCG
507 AAACCCG
1 AAACCCG
514 AAAACCCG
1 -AAACCCG
522 AATACCCG
1 AA-ACCCG
530 CAAACCCG
1 -AAACCCG
538 AAACTCCG
1 AAAC-CCG
546 AAACCCG
1 AAACCCG
553 AAACCCG
1 AAACCCG
560 AAACCCG
1 AAACCCG
567 TAAACCCG
1 -AAACCCG
*
575 -ACCCCGG
1 AAACCC-G
582 AAACCCCG
1 AAA-CCCG
590 AAACCCG
1 AAACCCG
597 AAACCCG
1 AAACCCG
604 AAACCCG
1 AAACCCG
611 AAACCCG
1 AAACCCG
618 AAACCCG
1 AAACCCG
625 AAACCCG
1 AAACCCG
632 AAA-CCG
1 AAACCCG
638 AAAACCCG
1 -AAACCCG
*
646 -AACCAG
1 AAACCCG
652 AAACCCCG
1 AAA-CCCG
660 CAAA--CG
1 -AAACCCG
*
666 ACACCTCG
1 AAACC-CG
674 -AACTCCG
1 AAAC-CCG
681 AAACCCG
1 AAACCCG
*
688 AAAACCG
1 AAACCCG
* *
695 CAACCCT
1 AAACCCG
702 AAACCCG
1 AAACCCG
709 -AACCCG
1 AAACCCG
715 AAAACCCG
1 -AAACCCG
723 AAACCCG
1 AAACCCG
730 AAACCCG
1 AAACCCG
*
737 TAAACCCC
1 -AAACCCG
745 AAACCCG
1 AAACCCG
752 TAAA-CCG
1 -AAACCCG
759 AAACCCG
1 AAACCCG
766 AAACCCG
1 AAACCCG
773 AAACCTCG
1 AAACC-CG
781 AAACCCG
1 AAACCCG
788 AAACCCG
1 AAACCCG
795 AAACCCTG
1 AAACCC-G
803 AAACCCG
1 AAACCCG
810 AAACCCG
1 AAACCCG
*
817 TAACCCG
1 AAACCCG
*
824 ACACCCG
1 AAACCCG
831 AAACCCG
1 AAACCCG
838 TAAATCCCG
1 -AAA-CCCG
847 AAACCCG
1 AAACCCG
854 ATAA-CCG
1 A-AACCCG
861 AAATATACCC-
1 --A-A-ACCCG
*
871 TAACCCTG
1 AAACCC-G
*
879 AAACACG
1 AAACCCG
886 AAACCCG
1 AAACCCG
893 TAAACCCG
1 -AAACCCG
*
901 TATACCCG
1 -AAACCCG
909 AAAAAACCCG
1 ---AAACCCG
919 AAACCCG
1 AAACCCG
926 AAAACCCG
1 -AAACCCG
*
934 CAA-CCG
1 AAACCCG
940 AAACCCG
1 AAACCCG
947 AAACCCG
1 AAACCCG
954 AAACCCG
1 AAACCCG
961 AAACCCGG
1 AAACCC-G
969 AAACCCG
1 AAACCCG
*
976 -CACCCG
1 AAACCCG
982 AAACCCG
1 AAACCCG
989 AAACCCG
1 AAACCCG
*
996 AAATCC-
1 AAACCCG
1002 AAACCCTG
1 AAACCC-G
1010 AATACCCG
1 AA-ACCCG
1018 AAACCTCG
1 AAACC-CG
1026 AAACCCG
1 AAACCCG
1033 AAACCCG
1 AAACCCG
1040 AAACCCG
1 AAACCCG
** *
1047 CCACTCG
1 AAACCCG
1054 AAACCCG
1 AAACCCG
1061 AAGACCCG
1 AA-ACCCG
*
1069 AAACCCT
1 AAACCCG
*
1076 ACACCCG
1 AAACCCG
1083 -AACCCG
1 AAACCCG
1089 --ACCCG
1 AAACCCG
1094 AAA-CCG
1 AAACCCG
1100 -AACCCG
1 AAACCCG
1106 AAACCCG
1 AAACCCG
1113 AAACCCTG
1 AAACCC-G
1121 AAACCCG
1 AAACCCG
1128 AAACCCG
1 AAACCCG
1135 AAACCCG
1 AAACCCG
*
1142 AAAACCG
1 AAACCCG
1149 AAA-CCG
1 AAACCCG
*
1155 AATCCCCG
1 AA-ACCCG
*
1163 AAAACCGG
1 -AAACCCG
1171 AAAACCCG
1 -AAACCCG
*
1179 AAAACCCT
1 -AAACCCG
1187 ATAACCCG
1 A-AACCCG
*
1195 AAAACCG
1 AAACCCG
*
1202 CAACCCG
1 AAACCCG
1209 AAACCCG
1 AAACCCG
1216 AAACCCG
1 AAACCCG
*
1223 AAAACCTG
1 -AAACCCG
1231 AGAACCCG
1 A-AACCCG
1239 AATTACCCG
1 AA--ACCCG
1248 AAACCCG
1 AAACCCG
1255 TAAACCCG
1 -AAACCCG
1263 AAACCCG
1 AAACCCG
*
1270 AAACCGG
1 AAACCCG
1277 AAACCCG
1 AAACCCG
1284 AAACCCCG
1 AAA-CCCG
1292 AAACCCG
1 AAACCCG
*
1299 ACA-CCG
1 AAACCCG
*
1305 AAACCGG
1 AAACCCG
*
1312 AAACCCT
1 AAACCCG
1319 AAA-CCG
1 AAACCCG
1325 ACAACCCG
1 A-AACCCG
1333 AAACCCG
1 AAACCCG
1340 AAACCC-
1 AAACCCG
1346 AAACCCG
1 AAACCCG
1353 AAACCGCG
1 AAACC-CG
1361 AAACCCG
1 AAACCCG
1368 AAACCCG
1 AAACCCG
1375 -AACCCTG
1 AAACCC-G
1382 AAACCCG
1 AAACCCG
1389 AAACCCG
1 AAACCCG
1396 AAAACCCG
1 -AAACCCG
1404 AAACCCG
1 AAACCCG
1411 AAAACCCG
1 -AAACCCG
1419 AAACCCG
1 AAACCCG
1426 AAACCCG
1 AAACCCG
1433 AAACCCG
1 AAACCCG
1440 AAACCCCG
1 AAA-CCCG
1448 AAACCCG
1 AAACCCG
1455 -AACCCG
1 AAACCCG
1461 AAACCCG
1 AAACCCG
1468 AAAAACCCG
1 --AAACCCG
1477 -AACCCG
1 AAACCCG
1483 ATAACCCG
1 A-AACCCG
1491 ATAACCCG
1 A-AACCCG
*
1499 ACACCCG
1 AAACCCG
1506 AAACCCG
1 AAACCCG
1513 AAACCCG
1 AAACCCG
*
1520 AATACCGCAA
1 AA-ACC-C-G
1530 AAACCCG
1 AAACCCG
1537 AAAAGCCCG
1 -AAA-CCCG
1546 AAACCCG
1 AAACCCG
1553 ATAAAACCCG
1 ---AAACCCG
*
1563 GAACCCG
1 AAACCCG
*
1570 ACACCCTG
1 AAACCC-G
1578 AAACCCG
1 AAACCCG
1585 AAACCCGG
1 AAACCC-G
1593 AAAACCCG
1 -AAACCCG
1601 AAACCCG
1 AAACCCG
1608 AAACCCG
1 AAACCCG
1615 AAACCCG
1 AAACCCG
1622 AAACCCG
1 AAACCCG
*
1629 AACCCCG
1 AAACCCG
1636 ATAA-CCG
1 A-AACCCG
*
1643 CAACCCG
1 AAACCCG
1650 AAACCCCG
1 AAA-CCCG
1658 AAACCCG
1 AAACCCG
1665 AAACACCCG
1 -AA-ACCCG
1674 AAAACCCTG
1 -AAACCC-G
1683 AATACCCG
1 AA-ACCCG
*
1691 CAACCCG
1 AAACCCG
*
1698 CAACCCG
1 AAACCCG
1705 AAACCCG
1 AAACCCG
**
1712 ATAACTAG
1 A-AACCCG
1720 TAAA-CCG
1 -AAACCCG
1727 AAACCCCG
1 AAA-CCCG
1735 TAAAAACCCG
1 ---AAACCCG
1745 AAA--CG
1 AAACCCG
1750 AAACCCG
1 AAACCCG
1757 AAACCCG
1 AAACCCG
1764 AAACCCG
1 AAACCCG
1771 AAACCCG
1 AAACCCG
1778 AAACCCG
1 AAACCCG
1785 AAAACCCG
1 -AAACCCG
1793 AAACCCG
1 AAACCCG
1800 AAACCCG
1 AAACCCG
1807 AATACCCCG
1 AA-A-CCCG
*
1816 ACACCCG
1 AAACCCG
1823 AAACCCG
1 AAACCCG
1830 AAAAACCCG
1 --AAACCCG
*
1839 CAACCCG
1 AAACCCG
1846 AAACCCGG
1 AAACCC-G
1854 AAA-CCG
1 AAACCCG
*
1860 GAACCCAG
1 AAACCC-G
1868 AAACCCG
1 AAACCCG
1875 AAACCCG
1 AAACCCG
1882 AAA-CCG
1 AAACCCG
*
1888 AAAACCG
1 AAACCCG
1895 AAACCCG
1 AAACCCG
1902 AAACCCG
1 AAACCCG
1909 AAACCCG
1 AAACCCG
*
1916 CAACCCG
1 AAACCCG
1923 AAACCCTG
1 AAACCC-G
1931 AAACCCG
1 AAACCCG
1938 ATAAAACCCGG
1 ---AAACCC-G
1949 AAACCCG
1 AAACCCG
1956 AAACCCG
1 AAACCCG
1963 AAAACCCG
1 -AAACCCG
1971 ACAACCCG
1 A-AACCCG
*
1979 TAACACCG
1 AAAC-CCG
1987 AAACCCG
1 AAACCCG
*
1994 AAACCAG
1 AAACCCG
2001 AAACCCG
1 AAACCCG
2008 AAATACCCG
1 -AA-ACCCG
2017 AAAAACCCG
1 --AAACCCG
* *
2026 ACACCCT
1 AAACCCG
2033 AAACCCG
1 AAACCCG
2040 AAACCCG
1 AAACCCG
2047 AAACCCG
1 AAACCCG
2054 -AA-CCG
1 AAACCCG
2059 AAATCCCG
1 AAA-CCCG
*
2067 ACACCCG
1 AAACCCG
2074 -AACCCG
1 AAACCCG
2080 AAA-CCG
1 AAACCCG
2086 ATAA-CCG
1 A-AACCCG
2093 AAACCCG
1 AAACCCG
2100 -AACCCG
1 AAACCCG
*
2106 AACCCCG
1 AAACCCG
*
2113 AAAACCG
1 AAACCCG
2120 AAA-CCG
1 AAACCCG
2126 AAACCCG
1 AAACCCG
2133 AAA-CCG
1 AAACCCG
**
2139 ACCCCCG
1 AAACCCG
2146 AAACCCG
1 AAACCCG
2153 -AA-CCG
1 AAACCCG
*
2158 AAACCAG
1 AAACCCG
2165 AAACCCG
1 AAACCCG
2172 -AACCCG
1 AAACCCG
2178 AAACCCG
1 AAACCCG
2185 AAAACCCG
1 -AAACCCG
2193 AAACCC-
1 AAACCCG
*
2199 TAACCCG
1 AAACCCG
2206 AAACCCG
1 AAACCCG
2213 AAACCCG
1 AAACCCG
*
2220 AATCCCG
1 AAACCCG
*
2227 CAACCCG
1 AAACCCG
2234 AAAACACCCG
1 --AA-ACCCG
*
2244 AAA-CCT
1 AAACCCG
2250 AAACCCG
1 AAACCCG
2257 ATAACCCG
1 A-AACCCG
2265 ATAACCCG
1 A-AACCCG
**
2273 ACCCCCG
1 AAACCCG
2280 AAATCTCCG
1 AAA-C-CCG
2289 AAAACCCG
1 -AAACCCG
2297 AAACCCG
1 AAACCCG
2304 AAACCCG
1 AAACCCG
2311 AAACTCCG
1 AAAC-CCG
2319 AAACCCG
1 AAACCCG
*
2326 -AACCGTG
1 AAACC-CG
2333 AAACCCG
1 AAACCCG
2340 AAAACCCTG
1 -AAACCC-G
2349 AAACCTCG
1 AAACC-CG
2357 AAACCCG
1 AAACCCG
2364 AAAACCCG
1 -AAACCCG
*
2372 AACCCCTG
1 AAACCC-G
2380 TAAA-CCG
1 -AAACCCG
2387 AAA-CCG
1 AAACCCG
2393 AAACCCG
1 AAACCCG
2400 --ACCCG
1 AAACCCG
2405 AAACCCG
1 AAACCCG
**
2412 AAACCTA
1 AAACCCG
2419 AAACCCG
1 AAACCCG
2426 AAA-CCG
1 AAACCCG
*
2432 CACACCCG
1 -AAACCCG
2440 -AACCCG
1 AAACCCG
2446 AAACCCG
1 AAACCCG
2453 AAACCCG
1 AAACCCG
2460 AAACCCG
1 AAACCCG
*
2467 AAAACCG
1 AAACCCG
*
2474 AAACACG
1 AAACCCG
*
2481 AATCCCG
1 AAACCCG
*
2488 -AACACG
1 AAACCCG
2494 TAAACCCG
1 -AAACCCG
2502 AAACCCG
1 AAACCCG
2509 -AACCCG
1 AAACCCG
2515 AAACCCTG
1 AAACCC-G
2523 AAAACCCG
1 -AAACCCG
2531 AAAACTCTCG
1 -AAAC-C-CG
2541 AAACTCCG
1 AAAC-CCG
2549 AATACCCG
1 AA-ACCCG
2557 AAACCCG
1 AAACCCG
2564 AAACCCG
1 AAACCCG
2571 AAACCCG
1 AAACCCG
2578 AAAACCCG
1 -AAACCCG
2586 AAACCCTG
1 AAACCC-G
2594 AAACCCG
1 AAACCCG
2601 AAAACCCG
1 -AAACCCG
2609 AAAACCCCG
1 -AAA-CCCG
2618 AAACCCG
1 AAACCCG
2625 AAACCCG
1 AAACCCG
2632 AAACCCG
1 AAACCCG
2639 AAA-CCG
1 AAACCCG
2645 AAACCCG
1 AAACCCG
*
2652 TAAATCCAG
1 -AAA-CCCG
2661 ATTAACCCG
1 A--AACCCG
2670 AAACCCG
1 AAACCCG
2677 AAACCCG
1 AAACCCG
2684 -AACCCG
1 AAACCCG
2690 AAACCCG
1 AAACCCG
2697 AAACCCG
1 AAACCCG
2704 AATACCCCG
1 AA-A-CCCG
2713 AAAACCC-
1 -AAACCCG
2720 AAACCCG
1 AAACCCG
2727 -AACCCG
1 AAACCCG
2733 AAACCCG
1 AAACCCG
2740 AAACCCG
1 AAACCCG
2747 AAACCCG
1 AAACCCG
2754 AAACCCTG
1 AAACCC-G
2762 AAATCCCG
1 AAA-CCCG
*
2770 TTAAACTCG
1 --AAACCCG
*
2779 AAACCCT
1 AAACCCG
2786 AAATCCCG
1 AAA-CCCG
*
2794 AACCCCG
1 AAACCCG
2801 AAACCCG
1 AAACCCG
*** **
2808 CTTCGGG
1 AAACCCG
2815 AAACCCG
1 AAACCCG
2822 AAACCCG
1 AAACCCG
2829 AAACCCG
1 AAACCCG
*
2836 ACACCCG
1 AAACCCG
2843 AAACCTCTG
1 AAACC-C-G
*
2852 AAAACCCT
1 -AAACCCG
2860 AAACCCG
1 AAACCCG
2867 AAACCCG
1 AAACCCG
2874 AAATCCCG
1 AAA-CCCG
2882 ATAAACCCG
1 --AAACCCG
2891 AAA-CCG
1 AAACCCG
*
2897 CAACCCG
1 AAACCCG
2904 ATAACCCG
1 A-AACCCG
2912 AAACCCG
1 AAACCCG
2919 AAATACCC-
1 -AA-ACCCG
2927 AAA-CCG
1 AAACCCG
2933 AAACCCG
1 AAACCCG
2940 AAACCCG
1 AAACCCG
2947 AAACCCG
1 AAACCCG
2954 AAACTCCGTG
1 AAAC-CC--G
2964 AAACCCG
1 AAACCCG
2971 AAACCCG
1 AAACCCG
2978 AAACCCG
1 AAACCCG
2985 AAACCCG
1 AAACCCG
2992 AAACCCG
1 AAACCCG
2999 AAACCCG
1 AAACCCG
3006 AAACCCG
1 AAACCCG
3013 AAACTTCCG
1 AAAC--CCG
3022 TATAA-CCG
1 -A-AACCCG
3030 AAACCCG
1 AAACCCG
3037 AAACCCG
1 AAACCCG
*
3044 AAACCCT
1 AAACCCG
3051 AAACCCG
1 AAACCCG
3058 AAATCCCG
1 AAA-CCCG
3066 AAACCCG
1 AAACCCG
3073 TAAACCCG
1 -AAACCCG
3081 AAACCCG
1 AAACCCG
3088 AAACCCG
1 AAACCCG
3095 AAA-CCG
1 AAACCCG
3101 AACACCCG
1 AA-ACCCG
3109 AAACCC-
1 AAACCCG
*
3115 AAACCAG
1 AAACCCG
3122 ACAACCCG
1 A-AACCCG
3130 AAACCTCG
1 AAACC-CG
*
3138 CAA-CCG
1 AAACCCG
3144 AAACCCG
1 AAACCCG
3151 AAACCC-
1 AAACCCG
*** *
3157 CCCCTCCC
1 AAAC-CCG
***
3165 CCCCCCTAG
1 AAACCC--G
3174 AAACCCG
1 AAACCCG
3181 -AACCCG
1 AAACCCG
*
3187 CAACCGCG
1 AAACC-CG
3195 AAACCGTCTG
1 AAACC--C-G
3205 TAAACCCG
1 -AAACCCG
3213 AAAACCCG
1 -AAACCCG
3221 AAACCCG
1 AAACCCG
3228 TAAACCCG
1 -AAACCCG
*
3236 -ACCCCG
1 AAACCCG
3242 AAACCCGG
1 AAACCC-G
3250 CATAACCCG
1 -A-AACCCG
3259 AAAACCCG
1 -AAACCCG
*
3267 AATCCCG
1 AAACCCG
3274 AAACCCGGG
1 AAACCC--G
*
3283 AATCCCCG
1 AA-ACCCG
3291 AAACCCTCG
1 AAA-CC-CG
3300 AACACCCG
1 AA-ACCCG
3308 AAACCCG
1 AAACCCG
3315 AAACCCG
1 AAACCCG
*
3322 CAACCCG
1 AAACCCG
3329 TAAACGCCG
1 -AAAC-CCG
3338 AAACCCG
1 AAACCCG
*
3345 CAACCCG
1 AAACCCG
3352 AAACCCG
1 AAACCCG
3359 -AA-CCG
1 AAACCCG
3364 AAACCCG
1 AAACCCG
3371 AAACCCCG
1 AAA-CCCG
3379 AAACCCG
1 AAACCCG
3386 AAA-CCG
1 AAACCCG
3392 AAACCCG
1 AAACCCG
3399 AAACCCG
1 AAACCCG
3406 AAACCCCG
1 AAA-CCCG
*
3414 CAACCCG
1 AAACCCG
3421 AAACCCG
1 AAACCCG
3428 AATACCCG
1 AA-ACCCG
3436 ATAACCCG
1 A-AACCCG
*
3444 CAAGCCCG
1 -AAACCCG
3452 AAACCCG
1 AAACCCG
3459 AAACCCG
1 AAACCCG
3466 AAACCTCTG
1 AAACC-C-G
3475 ATAAACCCG
1 --AAACCCG
3484 AAACCCG
1 AAACCCG
3491 AAACCCG
1 AAACCCG
3498 AAACCCG
1 AAACCCG
3505 -AACCCG
1 AAACCCG
3511 AAACCCTG
1 AAACCC-G
***
3519 AAA-AAA
1 AAACCCG
3525 AAACCCG
1 AAACCCG
3532 AAACCCG
1 AAACCCG
3539 AAACCCG
1 AAACCCG
3546 AAACACCG
1 AAAC-CCG
3554 AAACCCG
1 AAACCCG
3561 AAACCTCG
1 AAACC-CG
* *
3569 AACCCCT
1 AAACCCG
* *
3576 CAATCCG
1 AAACCCG
3583 AAACCCG
1 AAACCCG
*
3590 AACCCCG
1 AAACCCG
3597 AAACCCG
1 AAACCCG
3604 AAACCCG
1 AAACCCG
3611 AAACCCG
1 AAACCCG
3618 AAACCTCTG
1 AAACC-C-G
3627 AAAACCCG
1 -AAACCCG
3635 AAACCC-
1 AAACCCG
*** *
3641 CCCCCCC
1 AAACCCG
*** *
3648 CCCCCCC
1 AAACCCG
***
3655 CCCCCCAG
1 AAACCC-G
*
3663 AAACCCT
1 AAACCCG
3670 AAACCCG
1 AAACCCG
3677 AAACCCCG
1 AAA-CCCG
3685 -AACCCG
1 AAACCCG
*
3691 AAGCCCG
1 AAACCCG
3698 AAACTCCG
1 AAAC-CCG
3706 TAAACCCTTG
1 -AAACCC--G
3716 AAACCCG
1 AAACCCG
3723 AAACCCG
1 AAACCCG
3730 AAACCCGG
1 AAACCC-G
3738 AAACCCG
1 AAACCCG
3745 AAA-CCG
1 AAACCCG
3751 ATAA-CCG
1 A-AACCCG
3758 AAACCCG
1 AAACCCG
3765 AAACCCG
1 AAACCCG
3772 AAACCCG
1 AAACCCG
3779 AAACCCG
1 AAACCCG
3786 AAAACCCG
1 -AAACCCG
3794 AAACCCG
1 AAACCCG
3801 AAACCCG
1 AAACCCG
3808 AAACCCG
1 AAACCCG
3815 AAACCCG
1 AAACCCG
3822 AAACCCG
1 AAACCCG
3829 AAACCCG
1 AAACCCG
3836 AAAACCCG
1 -AAACCCG
3844 AAACCCG
1 AAACCCG
3851 AAACCCG
1 AAACCCG
3858 AAACCCG
1 AAACCCG
3865 AAA-CCG
1 AAACCCG
3871 AAACCCG
1 AAACCCG
*
3878 TAACCCTCG
1 -AAACC-CG
3887 AAACCCG
1 AAACCCG
3894 AATACCCG
1 AA-ACCCG
3902 AAA-CCG
1 AAACCCG
*
3908 AAACCCA
1 AAACCCG
3915 AAACCCG
1 AAACCCG
3922 AAACCCG
1 AAACCCG
3929 AAACCCG
1 AAACCCG
3936 AAA-CCG
1 AAACCCG
3942 AAA-CCG
1 AAACCCG
3948 AAACCCGG
1 AAACCC-G
3956 AAACCCG
1 AAACCCG
3963 AAACCCG
1 AAACCCG
3970 AAA-CC-
1 AAACCCG
*
3975 ATACCACG
1 AAACC-CG
3983 AAACCCG
1 AAACCCG
3990 AAACCCTG
1 AAACCC-G
3998 AAACCCG
1 AAACCCG
*
4005 ATAACCAG
1 A-AACCCG
*
4013 AAACCTG
1 AAACCCG
4020 AAACCCG
1 AAACCCG
4027 AAACCCGTG
1 AAACCC--G
*
4036 AACTCCCG
1 AA-ACCCG
4044 TAAACCCG
1 -AAACCCG
4052 AAACCCG
1 AAACCCG
4059 -AACCCG
1 AAACCCG
4065 AAATCTCCG
1 AAA-C-CCG
4074 AAACCCG
1 AAACCCG
*
4081 AAACCTG
1 AAACCCG
4088 ATAA-CCG
1 A-AACCCG
4095 AAACCCG
1 AAACCCG
4102 AAACCCGG
1 AAACCC-G
4110 AAACTCCG
1 AAAC-CCG
4118 AAACTCCG
1 AAAC-CCG
4126 AAACGCGCG
1 AAAC-C-CG
4135 AATCACCCG
1 AA--ACCCG
4144 TAAA--CG
1 -AAACCCG
4150 AAACCCG
1 AAACCCG
4157 AAACCCAG
1 AAACCC-G
4165 AATACCCG
1 AA-ACCCG
4173 AAACCCG
1 AAACCCG
4180 AAAACCCG
1 -AAACCCG
4188 AAACCCG
1 AAACCCG
4195 AAACCCG
1 AAACCCG
4202 AAACCCG
1 AAACCCG
4209 AAACCCG
1 AAACCCG
4216 AAACCCG
1 AAACCCG
4223 AAACCCG
1 AAACCCG
*
4230 CAACTCCG
1 AAAC-CCG
4238 AAAACCCGG
1 -AAACCC-G
4247 AAA-CCG
1 AAACCCG
4253 AAA-CCG
1 AAACCCG
**
4259 AAA--AA
1 AAACCCG
4264 AAACCCG
1 AAACCCG
4271 ATAACCCG
1 A-AACCCG
*
4279 AAAACCG
1 AAACCCG
4286 AAACCCG
1 AAACCCG
4293 AAACCTCG
1 AAACC-CG
4301 AAACGCCG
1 AAAC-CCG
4309 AAAACCCG
1 -AAACCCG
4317 AAACCCG
1 AAACCCG
4324 AAACTTCCGG
1 AAAC--CC-G
4334 AAATCCCG
1 AAA-CCCG
4342 TACAACCCG
1 -A-AACCCG
4351 AAACCCG
1 AAACCCG
4358 AAACCCGG
1 AAACCC-G
4366 AAACCCTG
1 AAACCC-G
4374 AAACCCG
1 AAACCCG
4381 AATACCCG
1 AA-ACCCG
4389 AAACCCG
1 AAACCCG
4396 AAACCCG
1 AAACCCG
*
4403 CAACCCG
1 AAACCCG
4410 TAAACCCG
1 -AAACCCG
4418 AACACCCG
1 AA-ACCCG
4426 AAACCCG
1 AAACCCG
*
4433 AAACCGG
1 AAACCCG
*
4440 AACCCGCGG
1 AAACC-C-G
4449 TAAACCCG
1 -AAACCCG
4457 AAACCCG
1 AAACCCG
4464 AAACCCG
1 AAACCCG
4471 AAACCCG
1 AAACCCG
4478 AAACCCG
1 AAACCCG
4485 AAACCCG
1 AAACCCG
4492 AAA-CCG
1 AAACCCG
4498 AAACCCG
1 AAACCCG
4505 AAATCTCCG
1 AAA-C-CCG
4514 AAACCCG
1 AAACCCG
4521 AAACTCCG
1 AAAC-CCG
4529 AAACCCG
1 AAACCCG
4536 AAATCCCGG
1 AAA-CCC-G
4545 AAA-CCG
1 AAACCCG
4551 AAACCCG
1 AAACCCG
4558 AAACCCG
1 AAACCCG
4565 -AACCCG
1 AAACCCG
4571 AAACCCG
1 AAACCCG
4578 ATAACCCG
1 A-AACCCG
*
4586 CAACCCG
1 AAACCCG
4593 AAACCTCG
1 AAACC-CG
4601 -AACCCG
1 AAACCCG
4607 AAACCCG
1 AAACCCG
4614 AAACCCG
1 AAACCCG
4621 AAAACCCCG
1 -AAA-CCCG
4630 AAACCCG
1 AAACCCG
4637 AAACTCCG
1 AAAC-CCG
4645 AAACCCG
1 AAACCCG
4652 ATAACCCG
1 A-AACCCG
4660 AAGAGATCCCG
1 -A-A-A-CCCG
4671 AAAAACCCG
1 --AAACCCG
4680 AAACCCTG
1 AAACCC-G
4688 AAACCCG
1 AAACCCG
4695 -AACCCG
1 AAACCCG
4701 AAACCCG
1 AAACCCG
4708 AAACCCG
1 AAACCCG
4715 AAACCTCG
1 AAACC-CG
4723 TAAACCTCG
1 -AAACC-CG
4732 AAAGCCTCG
1 AAA-CC-CG
4741 AAACACCCTG
1 -AA-ACCC-G
4751 -AACCCG
1 AAACCCG
4757 CAAACCCG
1 -AAACCCG
*
4765 CAACCCG
1 AAACCCG
4772 AAACTCCG
1 AAAC-CCG
4780 AAACCC-
1 AAACCCG
4786 AAACCCG
1 AAACCCG
4793 AATACCCGG
1 AA-ACCC-G
4802 AAACCCG
1 AAACCCG
4809 AAAACCCG
1 -AAACCCG
4817 ATAACTCCG
1 A-AAC-CCG
4826 AAAACCCG
1 -AAACCCG
4834 CATAACCCG
1 -A-AACCCG
4843 -AACCCG
1 AAACCCG
* *
4849 CACCCCG
1 AAACCCG
*
4856 CAACCCG
1 AAACCCG
4863 AAACCCG
1 AAACCCG
4870 AAACCCG
1 AAACCCG
4877 AAACCCG
1 AAACCCG
4884 AAACCCG
1 AAACCCG
4891 TAAACCCAG
1 -AAACCC-G
* *
4900 CACCCCGG
1 AAACCC-G
4908 AAACCCGG
1 AAACCC-G
4916 AAACCCG
1 AAACCCG
4923 AACACCCG
1 AA-ACCCG
4931 AAACCCG
1 AAACCCG
*
4938 -ACCCCG
1 AAACCCG
4944 AAACCCG
1 AAACCCG
4951 AAACCCG
1 AAACCCG
4958 AAATCCTTCCG
1 AAA--C--CCG
4969 AAACCCTG
1 AAACCC-G
4977 AAACCCGG
1 AAACCC-G
4985 AAACCCG
1 AAACCCG
4992 AAACCCG
1 AAACCCG
* *
4999 AGGAGCCGGG
1 A--AACC-CG
5009 AAACCCG
1 AAACCCG
5016 AATACCCG
1 AA-ACCCG
5024 AAACCCG
1 AAACCCG
*
5031 AAACCCT
1 AAACCCG
*
5038 AACCCCG
1 AAACCCG
5045 AAACCCG
1 AAACCCG
*
5052 -AA-CTG
1 AAACCCG
5057 ATAACCCG
1 A-AACCCG
5065 AAACCCG
1 AAACCCG
5072 AAACCCG
1 AAACCCG
5079 ATAACCCG
1 A-AACCCG
5087 AAACCCG
1 AAACCCG
5094 AAA-CCG
1 AAACCCG
5100 AAACCCTG
1 AAACCC-G
5108 AAACCTCG
1 AAACC-CG
5116 AAACCCTG
1 AAACCC-G
5124 AAACTCCG
1 AAAC-CCG
*
5132 CAACCCCG
1 -AAACCCG
5140 AAACCCG
1 AAACCCG
5147 AAACCTCG
1 AAACC-CG
5155 AAACCCG
1 AAACCCG
5162 AAACCCG
1 AAACCCG
5169 AAA-CCG
1 AAACCCG
5175 AAAACCCG
1 -AAACCCG
*
5183 TCATACCCTTG
1 --AAACCC--G
5194 ATAACCCG
1 A-AACCCG
5202 AAACCGCG
1 AAACC-CG
5210 AAACCCTCG
1 AAA-CC-CG
*
5219 AAACCAG
1 AAACCCG
5226 AAACCCG
1 AAACCCG
*
5233 ACACCCG
1 AAACCCG
5240 AAACCCG
1 AAACCCG
5247 AAACCCG
1 AAACCCG
5254 AAACCCG
1 AAACCCG
5261 ATAACCCG
1 A-AACCCG
5269 AAACCCG
1 AAACCCG
5276 AAACCCG
1 AAACCCG
5283 AAACCCG
1 AAACCCG
5290 ACAACCCG
1 A-AACCCG
*
5298 TAACCTCCG
1 -AAAC-CCG
5307 AAAACCCG
1 -AAACCCG
5315 AAAACCCG
1 -AAACCCG
5323 AAACCCG
1 AAACCCG
5330 TAAACCCG
1 -AAACCCG
5338 AAA-CCG
1 AAACCCG
5344 AAACCCG
1 AAACCCG
*
5351 AACCCCG
1 AAACCCG
5358 AAACCCG
1 AAACCCG
5365 AAACCCG
1 AAACCCG
5372 -AACCCTG
1 AAACCC-G
5379 AAACCCCG
1 AAA-CCCG
5387 AAACCCG
1 AAACCCG
5394 AAACCCG
1 AAACCCG
5401 AAAACCCG
1 -AAACCCG
5409 AAA-CCG
1 AAACCCG
5415 AATATCCCG
1 AA-A-CCCG
5424 AAACCCGG
1 AAACCC-G
5432 ATAACTCCTG
1 A-AAC-CC-G
5442 AAACCCG
1 AAACCCG
5449 AAACCCG
1 AAACCCG
5456 AAACCCG
1 AAACCCG
5463 AAACCTCG
1 AAACC-CG
5471 AAACTCCG
1 AAAC-CCG
5479 AAA-CCG
1 AAACCCG
5485 AAACCCG
1 AAACCCG
5492 -AACCCG
1 AAACCCG
5498 AAACCCG
1 AAACCCG
5505 AAAACCCG
1 -AAACCCG
*
5513 AAACCAG
1 AAACCCG
5520 AAACCCG
1 AAACCCG
5527 AAACCCG
1 AAACCCG
*
5534 CAACCTCG
1 AAACC-CG
*
5542 AAACCTG
1 AAACCCG
5549 AAACCCG
1 AAACCCG
5556 AAACCCG
1 AAACCCG
5563 AAACCCG
1 AAACCCG
5570 AAACACCCG
1 -AA-ACCCG
5579 AAA-CCG
1 AAACCCG
5585 AAACCCG
1 AAACCCG
5592 AATACCCG
1 AA-ACCCG
*
5600 CAA-CCG
1 AAACCCG
5606 AAACCCTG
1 AAACCC-G
5614 AAACCCG
1 AAACCCG
5621 -AA-CCG
1 AAACCCG
5626 -AACCCG
1 AAACCCG
5632 AAACCCG
1 AAACCCG
*
5639 AAACGCAG
1 AAAC-CCG
*
5647 AAACCAG
1 AAACCCG
5654 AATACCCG
1 AA-ACCCG
5662 AAA-CCG
1 AAACCCG
5668 AAACCCG
1 AAACCCG
5675 AAACCCG
1 AAACCCG
5682 -AACCCG
1 AAACCCG
5688 AATACCCG
1 AA-ACCCG
5696 AAA-CCG
1 AAACCCG
*
5702 CAACCCG
1 AAACCCG
5709 AAACCCG
1 AAACCCG
5716 ATAA-CCG
1 A-AACCCG
*
5723 AAAACAAC-
1 -AAAC-CCG
5731 AAACCCCG
1 AAA-CCCG
5739 AAACCCG
1 AAACCCG
5746 ATAACCCG
1 A-AACCCG
5754 AAACCCTG
1 AAACCC-G
5762 AAACCCG
1 AAACCCG
5769 AAA-CCG
1 AAACCCG
5775 TAAACCCG
1 -AAACCCG
5783 AAACCCG
1 AAACCCG
5790 AAACCCG
1 AAACCCG
*
5797 AACCCCG
1 AAACCCG
5804 -AACCCG
1 AAACCCG
5810 AAACCCG
1 AAACCCG
5817 AAACCCG
1 AAACCCG
5824 ATAACCCG
1 A-AACCCG
5832 AAACCCG
1 AAACCCG
5839 ATATACCCCG
1 A-A-A-CCCG
5849 AAATCCCG
1 AAA-CCCG
5857 AAAACCCG
1 -AAACCCG
5865 AAACCCG
1 AAACCCG
5872 AAACCCG
1 AAACCCG
5879 AAACCCG
1 AAACCCG
5886 AAAACCCG
1 -AAACCCG
5894 AATAACCCG
1 -A-AACCCG
5903 AAACCCG
1 AAACCCG
5910 AAACCCG
1 AAACCCG
5917 AAACCCG
1 AAACCCG
5924 AAAACCCG
1 -AAACCCG
5932 AAACCCG
1 AAACCCG
5939 AAACCCCGG
1 AAA-CCC-G
5948 AACACCCG
1 AA-ACCCG
5956 AAACCCG
1 AAACCCG
5963 AAACCCG
1 AAACCCG
5970 CAAACCCG
1 -AAACCCG
5978 AAAACCCG
1 -AAACCCG
5986 AAACCCTG
1 AAACCC-G
5994 AAACCCG
1 AAACCCG
6001 AAACCCG
1 AAACCCG
6008 AAACTCCGG
1 AAAC-CC-G
6017 ATAAACCCTG
1 --AAACCC-G
6027 AATATCCCG
1 AA-A-CCCG
6036 AAAACCCG
1 -AAACCCG
6044 CAAACCCG
1 -AAACCCG
6052 AAACCCG
1 AAACCCG
6059 AAAACCCG
1 -AAACCCG
6067 AAACCCG
1 AAACCCG
6074 AAAACCCG
1 -AAACCCG
6082 AAACCCCG
1 AAA-CCCG
6090 AAACTCCG
1 AAAC-CCG
*
6098 AAAACTCGCT
1 -AAAC-C-CG
*
6108 AGAACCCT
1 A-AACCCG
*
6116 CAACCTCG
1 AAACC-CG
6124 AAACCCG
1 AAACCCG
6131 AATACCCG
1 AA-ACCCG
*
6139 TAACTCCG
1 AAAC-CCG
*
6147 AAACCCT
1 AAACCCG
6154 AAACCCCCG
1 AAA--CCCG
6163 AAACCCG
1 AAACCCG
*
6170 -ACCCCG
1 AAACCCG
6176 AAACCCG
1 AAACCCG
6183 AAACCTCG
1 AAACC-CG
6191 AAACCCG
1 AAACCCG
6198 AAACCCGG
1 AAACCC-G
6206 AAAACCCG
1 -AAACCCG
6214 AAACCCG
1 AAACCCG
6221 AAACCCG
1 AAACCCG
*
6228 CACACCCG
1 -AAACCCG
6236 AAACCCG
1 AAACCCG
6243 AAACCCG
1 AAACCCG
6250 AAACCCG
1 AAACCCG
6257 -AACCCG
1 AAACCCG
*
6263 AAAACCG
1 AAACCCG
*
6270 ACACCCG
1 AAACCCG
6277 AAACCCG
1 AAACCCG
6284 ACAACCCG
1 A-AACCCG
6292 AAAAACCCTG
1 --AAACCC-G
6302 AAACCCTG
1 AAACCC-G
*
6310 AAAATCCCA
1 -AAA-CCCG
6319 ATAACCCTTG
1 A-AACCC--G
6329 AATTACCTCG
1 AA--ACC-CG
6339 AAACCCG
1 AAACCCG
6346 AAATTCCCG
1 AAA--CCCG
6355 AAACCCG
1 AAACCCG
6362 AAACCCG
1 AAACCCG
6369 AAACCCG
1 AAACCCG
6376 AAACCCG
1 AAACCCG
6383 AAACCCG
1 AAACCCG
*
6390 AAAACC-
1 AAACCCG
6396 AAACCCG
1 AAACCCG
6403 AAACCC-
1 AAACCCG
6409 AAACCCG
1 AAACCCG
6416 AAACCTCG
1 AAACC-CG
6424 AAACCCG
1 AAACCCG
6431 -AACCCG
1 AAACCCG
6437 AAACCTCG
1 AAACC-CG
6445 AAACCCG
1 AAACCCG
6452 AAACCCG
1 AAACCCG
6459 AAAACCCG
1 -AAACCCG
6467 TAAACCCG
1 -AAACCCG
6475 AAAAACTCCG
1 --AAAC-CCG
* *
6485 AAAACGG
1 AAACCCG
*
6492 AAATCCG
1 AAACCCG
6499 AAACCCG
1 AAACCCG
6506 AAATCCTCG
1 AAA-CC-CG
6515 AAACCCG
1 AAACCCG
*
6522 -AACCCT
1 AAACCCG
6528 AAACCCG
1 AAACCCG
6535 AAACCCG
1 AAACCCG
*
6542 -CACCC-
1 AAACCCG
6547 AAACCCG
1 AAACCCG
6554 TAAATCCCG
1 -AAA-CCCG
6563 -AACCCG
1 AAACCCG
6569 AAACCCG
1 AAACCCG
6576 AAACCCG
1 AAACCCG
6583 AAACCCG
1 AAACCCG
6590 AAACCCG
1 AAACCCG
6597 TAAACCCG
1 -AAACCCG
6605 AAACCCG
1 AAACCCG
6612 AAACCC-
1 AAACCCG
6618 AAACCCG
1 AAACCCG
6625 -AACCCG
1 AAACCCG
6631 -AACTCCG
1 AAAC-CCG
6638 AAACCCTG
1 AAACCC-G
6646 AAACCCG
1 AAACCCG
*
6653 AAACCAG
1 AAACCCG
6660 AAAACCCGG
1 -AAACCC-G
6669 AAACCCG
1 AAACCCG
6676 AAACCCG
1 AAACCCG
6683 AAACCCG
1 AAACCCG
6690 AAACCCG
1 AAACCCG
6697 AAA-CCG
1 AAACCCG
6703 AAACCCG
1 AAACCCG
6710 AAACCCG
1 AAACCCG
6717 AAACCCG
1 AAACCCG
6724 AAACCCCG
1 AAA-CCCG
6732 AAACCCG
1 AAACCCG
6739 AAACCCG
1 AAACCCG
6746 AAACCCG
1 AAACCCG
*
6753 AACCCCG
1 AAACCCG
6760 AAACTCCCG
1 AAA--CCCG
6769 AAACCCG
1 AAACCCG
6776 CAAACCGCG
1 -AAACC-CG
*
6785 AACCCCG
1 AAACCCG
6792 AAACCCG
1 AAACCCG
6799 AAACCCCG
1 AAA-CCCG
6807 AAACCCG
1 AAACCCG
6814 AAACCCG
1 AAACCCG
6821 AAAACCCG
1 -AAACCCG
*
6829 AAACCCTA
1 AAACCC-G
6837 AAACCCG
1 AAACCCG
6844 AATAACCCG
1 -A-AACCCG
6853 AAAACCC-
1 -AAACCCG
*
6860 TAACCCG
1 AAACCCG
6867 AAACCCG
1 AAACCCG
*
6874 AAAACCG
1 AAACCCG
6881 AAATCCTCG
1 AAA-CC-CG
6890 AAACCTCG
1 AAACC-CG
6898 AAACCCG
1 AAACCCG
6905 AAACCCG
1 AAACCCG
6912 CAAATCCTCG
1 -AAA-CC-CG
**
6922 CATCCCCCG
1 -A-AACCCG
6931 -AACCCG
1 AAACCCG
6937 AAACCCG
1 AAACCCG
6944 AAACCCCG
1 AAA-CCCG
*
6952 ATCACCCG
1 A-AACCCG
6960 -AACCCG
1 AAACCCG
6966 -AACCCGG
1 AAACCC-G
6973 AAACCCG
1 AAACCCG
6980 AAACCCG
1 AAACCCG
*
6987 AAAACCG
1 AAACCCG
6994 AAACCCG
1 AAACCCG
7001 AAACTTCTCG
1 AAAC--C-CG
7011 TAAACCCG
1 -AAACCCG
*
7019 CAACCCG
1 AAACCCG
7026 AAACCCG
1 AAACCCG
7033 AAACCCG
1 AAACCCG
7040 AAACCCG
1 AAACCCG
*
7047 CAA-CCG
1 AAACCCG
7053 AAATCCCG
1 AAA-CCCG
7061 AAACCCGG
1 AAACCC-G
7069 ATAACCCG
1 A-AACCCG
7077 -AACCCG
1 AAACCCG
7083 AAACTCCG
1 AAAC-CCG
7091 AAAACCCG
1 -AAACCCG
7099 AAACCCTG
1 AAACCC-G
7107 ACAACCCG
1 A-AACCCG
7115 AAACCCG
1 AAACCCG
7122 AAACCCG
1 AAACCCG
*
7129 AAACCCT
1 AAACCCG
*
7136 AACCCCG
1 AAACCCG
7143 AAACCCG
1 AAACCCG
7150 AAACCCG
1 AAACCCG
7157 AGGATACCCG
1 A--A-ACCCG
*
7167 AACCCCG
1 AAACCCG
7174 AAACCCG
1 AAACCCG
*
7181 AACCCCG
1 AAACCCG
*
7188 CAACCCG
1 AAACCCG
7195 AAAACCCG
1 -AAACCCG
7203 AAAACCCG
1 -AAACCCG
7211 AAACCCTG
1 AAACCC-G
* *
7219 CACCCCTG
1 AAACCC-G
*
7227 AGCACCCG
1 A-AACCCG
7235 -AACCCG
1 AAACCCG
7241 AAACCCG
1 AAACCCG
7248 AGAA-CCG
1 A-AACCCG
7255 AATACCCG
1 AA-ACCCG
7263 -AACGCCG
1 AAAC-CCG
7270 -AACCCG
1 AAACCCG
7276 AAACCCG
1 AAACCCG
7283 AGTTAACCCG
1 A---AACCCG
7293 AAACCCG
1 AAACCCG
7300 AAACCCG
1 AAACCCG
7307 AAACCTCG
1 AAACC-CG
7315 AAACCCG
1 AAACCCG
7322 CAATACCCG
1 -AA-ACCCG
7331 AAACCCG
1 AAACCCG
7338 AAATCCCG
1 AAA-CCCG
7346 AAA-CC-
1 AAACCCG
*
7351 AAACCTG
1 AAACCCG
7358 AAACCCG
1 AAACCCG
7365 AAACCCTG
1 AAACCC-G
7373 AAACCCG
1 AAACCCG
7380 -AACCCTG
1 AAACCC-G
7387 AAACCCG
1 AAACCCG
7394 AAACCCG
1 AAACCCG
*
7401 AAATCCG
1 AAACCCG
*
7408 ATACCCG
1 AAACCCG
7415 AAACCCG
1 AAACCCG
7422 AAACCCG
1 AAACCCG
*
7429 ACACCCG
1 AAACCCG
7436 AAACCCG
1 AAACCCG
7443 AAACCCG
1 AAACCCG
7450 AAACCCG
1 AAACCCG
7457 AAAACCCG
1 -AAACCCG
7465 AAACCCG
1 AAACCCG
*
7472 AAACCCT
1 AAACCCG
*
7479 AAACCGG
1 AAACCCG
*
7486 AACCCCG
1 AAACCCG
7493 AAA-CCG
1 AAACCCG
7499 AAACCCTG
1 AAACCC-G
7507 -AACCGCAG
1 AAACC-C-G
7515 AAACCCG
1 AAACCCG
7522 AAACCCG
1 AAACCCG
7529 AAACCCG
1 AAACCCG
7536 AATACCCCG
1 AA-A-CCCG
7545 AAACTCCG
1 AAAC-CCG
7553 AAACCCG
1 AAACCCG
7560 AAACCCG
1 AAACCCG
7567 AAACCCG
1 AAACCCG
7574 AAACCCG
1 AAACCCG
7581 AAACCCG
1 AAACCCG
7588 AAAACCCG
1 -AAACCCG
7596 AAACCCG
1 AAACCCG
7603 TATAACCCG
1 -A-AACCCG
7612 AAACCCG
1 AAACCCG
*
7619 AAAACCG
1 AAACCCG
7626 AAACCCCG
1 AAA-CCCG
*
7634 AACTCTCCG
1 AA-AC-CCG
7643 AAACCCTG
1 AAACCC-G
7651 AAACCCG
1 AAACCCG
7658 AAACCCG
1 AAACCCG
7665 AAA-CCG
1 AAACCCG
7671 AAACCCG
1 AAACCCG
7678 AAACCCG
1 AAACCCG
7685 AAACCTCCG
1 AAA-C-CCG
7694 AATCACCCG
1 AA--ACCCG
7703 AAACCCG
1 AAACCCG
* *
7710 CACCCTCG
1 AAACC-CG
7718 AAA-CCG
1 AAACCCG
7724 AAACCCG
1 AAACCCG
7731 AAACCCG
1 AAACCCG
**
7738 CCACCCG
1 AAACCCG
7745 ATAAACCCG
1 --AAACCCG
7754 AAACCCG
1 AAACCCG
7761 AACACCCTG
1 AA-ACCC-G
7770 AAACCCG
1 AAACCCG
7777 AAACGCCG
1 AAAC-CCG
7785 TAAACCCG
1 -AAACCCG
7793 -AACCCG
1 AAACCCG
7799 AAACTCCG
1 AAAC-CCG
7807 AAACCCG
1 AAACCCG
7814 AAACTCCCAG
1 AAA--CCC-G
7824 AAAACCCG
1 -AAACCCG
7832 AAACCC-
1 AAACCCG
7838 AAACCCG
1 AAACCCG
7845 AAACCC-
1 AAACCCG
*
7851 AAACCACA
1 AAACC-CG
*
7859 AAACCCT
1 AAACCCG
* *
7866 CAACCCC
1 AAACCCG
*
7873 AAACCCC
1 AAACCCG
7880 AAACCCG
1 AAACCCG
*
7887 CAAACCCC
1 -AAACCCG
*
7895 AAACCCC
1 AAACCCG
7902 AAACCCG
1 AAACCCG
7909 -AACCCG
1 AAACCCG
7915 AAA-CCG
1 AAACCCG
7921 AAACCTCG
1 AAACC-CG
7929 AAACCCG
1 AAACCCG
7936 AACACCCG
1 AA-ACCCG
7944 AAA-CCG
1 AAACCCG
7950 AAACCCG
1 AAACCCG
7957 AAACCTCG
1 AAACC-CG
*
7965 ACACCCG
1 AAACCCG
7972 AAA--CG
1 AAACCCG
7977 AAACCCG
1 AAACCCG
7984 AAACCCG
1 AAACCCG
7991 AAACCCG
1 AAACCCG
7998 AAA--CG
1 AAACCCG
8003 AAA-CCG
1 AAACCCG
8009 AAA-CC-
1 AAACCCG
8014 AAACCCG
1 AAACCCG
8021 AAA-CCG
1 AAACCCG
8027 AAACCCG
1 AAACCCG
*
8034 AAACCCA
1 AAACCCG
8041 AAACCCCG
1 AAA-CCCG
8049 AAAAACCC-
1 --AAACCCG
8057 AAACCC-
1 AAACCCG
*
8063 ACCCAACCCC
1 A---AACCCG
* *
8073 CAACCCC
1 AAACCCG
*
8080 AAACCCC
1 AAACCCG
*
8087 AAACCCC
1 AAACCCG
*
8094 AAACCCC
1 AAACCCG
*
8101 AAACCCC
1 AAACCCG
*
8108 AAACCCC
1 AAACCCG
*
8115 AAACCCCA
1 AAA-CCCG
*
8123 AAACCCC
1 AAACCCG
*
8130 AAACCCCA
1 AAA-CCCG
*
8138 AAACCCC
1 AAACCCG
8145 AAACCCG
1 AAACCCG
*
8152 AAACCCC
1 AAACCCG
*
8159 AAACCCT
1 AAACCCG
*
8166 AAACCCT
1 AAACCCG
8173 AAACCCG
1 AAACCCG
*
8180 -AACCCT
1 AAACCCG
8186 AAACCCG
1 AAACCCG
8193 AAACCCG
1 AAACCCG
8200 AAACCCG
1 AAACCCG
8207 AAACCC-
1 AAACCCG
8213 AAACCCG
1 AAACCCG
8220 AAACCCG
1 AAACCCG
*
8227 AAACCCA
1 AAACCCG
8234 AAACCC-
1 AAACCCG
8240 -AACCC-
1 AAACCCG
*
8245 AAACCCC
1 AAACCCG
*
8252 AAACCCC
1 AAACCCG
*
8259 AAACCCC
1 AAACCCG
*
8266 AAACCCC
1 AAACCCG
*
8273 AAACCCC
1 AAACCCG
*
8280 AAACCCC
1 AAACCCG
8287 AAACCC-
1 AAACCCG
*
8293 AAACCCC
1 AAACCCG
*
8300 AAACCCC
1 AAACCCG
*
8307 AAACCCC
1 AAACCCG
8314 ATAACCC-
1 A-AACCCG
*
8321 AAACCCC
1 AAACCCG
*
8328 AAACCCC
1 AAACCCG
*
8335 AAACCCC
1 AAACCCG
8342 AAACCC-
1 AAACCCG
*
8348 AAACCCC
1 AAACCCG
*
8355 AAACCCC
1 AAACCCG
*
8362 AAACCCC
1 AAACCCG
8369 AAACACC-
1 AAAC-CCG
8376 AAACCC-
1 AAACCCG
*
8382 AAACCCCA
1 AAA-CCCG
*
8390 AAACCCC
1 AAACCCG
*
8397 AAACCCC
1 AAACCCG
*
8404 AAACCCC
1 AAACCCG
*
8411 AAACCCC
1 AAACCCG
*
8418 AAACCCC
1 AAACCCG
*
8425 AAACCCCC
1 AAA-CCCG
*
8433 AAACCCC
1 AAACCCG
*
8440 AAACCCC
1 AAACCCG
8447 AAACCC-
1 AAACCCG
*
8453 AAACCCC
1 AAACCCG
*
8460 AAACCCC
1 AAACCCG
*
8467 AAACCCC
1 AAACCCG
*
8474 AAACCCCA
1 AAA-CCCG
8482 AAACCC-
1 AAACCCG
8488 AAACCC-
1 AAACCCG
*
8494 AAACCCCAAC
1 AAA-CCC--G
*
8504 AAACCCC
1 AAACCCG
*
8511 AAACCCC
1 AAACCCG
8518 AAACCC-
1 AAACCCG
* *
8524 CAACCCC
1 AAACCCG
*
8531 AAACCCC
1 AAACCCG
*
8538 AAACCCC
1 AAACCCG
*
8545 AAACCCC
1 AAACCCG
8552 AAACCC-
1 AAACCCG
* *
8558 CAACCCC
1 AAACCCG
*
8565 AAACCCC
1 AAACCCG
*
8572 AAACCCCA
1 AAA-CCCG
*
8580 AAACCCT
1 AAACCCG
*
8587 AAACCCCAA
1 AAA-CCC-G
*
8596 AAACCCC
1 AAACCCG
8603 AAACCC-
1 AAACCCG
* *
8609 CAACCCC
1 AAACCCG
*
8616 AAACCCC
1 AAACCCG
*
8623 AAACCCC
1 AAACCCG
*
8630 AAACCCC
1 AAACCCG
8637 AAACCC-
1 AAACCCG
*
8643 AAACCCT
1 AAACCCG
*
8650 AAACCCCTA
1 AAA-CCC-G
8659 AAACCCCG
1 AAA-CCCG
*
8667 AACCCCG
1 AAACCCG
*
8674 AACCCCG
1 AAACCCG
*
8681 AACCCCG
1 AAACCCG
*
8688 AACCCCG
1 AAACCCG
*
8695 AACCCCG
1 AAACCCG
*
8702 -AACCCT
1 AAACCCG
*
8708 AAACCCC
1 AAACCCG
*
8715 AAACCCC
1 AAACCCG
*
8722 AAACCCC
1 AAACCCG
*
8729 AAACCCC
1 AAACCCG
*
8736 AAACCCC
1 AAACCCG
*
8743 AAACCCC
1 AAACCCG
8750 AAAC
1 AAAC
8754 TATAAACCCT
Statistics
Matches: 7554, Mismatches: 478, Indels: 1420
0.80 0.05 0.15
Matches are distributed among these distances:
5 76 0.01
6 789 0.10
7 4151 0.55
8 1750 0.23
9 553 0.07
10 176 0.02
11 52 0.01
12 7 0.00
ACGTcount: A:0.41, C:0.42, G:0.13, T:0.04
Consensus pattern (7 bp):
AAACCCG
Found at i:8929 original size:131 final size:131
Alignment explanation
Indices: 8775--9058 Score: 550
Period size: 131 Copynumber: 2.2 Consensus size: 131
8765 AACCCTATTC
8775 CTAAACCCTCAACCCTAAACCCTCAACCCTAAACCCTCAACCCCTAACCCTAAAACCCCAAACCC
1 CTAAACCCTCAACCCTAAACCCTCAACCCTAAACCCTCAACCCCTAACCCTAAAACCCCAAACCC
8840 CTGAAACCCCAAACCCCGAACCCTGAACCCTTATACCTAAAACCTCAAACCCAAAACCTCAATCC
66 CTGAAACCCCAAACCCCGAACCCTGAACCCTTATACCTAAAACCTCAAACCCAAAACCTCAATCC
8905 T
131 T
8906 CTAAACCCTCAACCCTAAACCCTCAACCCTAAACCCTCAACCCCTAACCCTAAAACCCCAAACCC
1 CTAAACCCTCAACCCTAAACCCTCAACCCTAAACCCTCAACCCCTAACCCTAAAACCCCAAACCC
8971 CTGAAACCCCAAACCCCGAACCCTGAACCCTTATACCTAAAACCTCAAACCCAAAACCTCAATCC
66 CTGAAACCCCAAACCCCGAACCCTGAACCCTTATACCTAAAACCTCAAACCCAAAACCTCAATCC
9036 T
131 T
* *
9037 CTAAACTCTAAACCCTAAACCC
1 CTAAACCCTCAACCCTAAACCC
9059 CCAAACCTCA
Statistics
Matches: 151, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
131 151 1.00
ACGTcount: A:0.38, C:0.46, G:0.02, T:0.14
Consensus pattern (131 bp):
CTAAACCCTCAACCCTAAACCCTCAACCCTAAACCCTCAACCCCTAACCCTAAAACCCCAAACCC
CTGAAACCCCAAACCCCGAACCCTGAACCCTTATACCTAAAACCTCAAACCCAAAACCTCAATCC
T
Found at i:8998 original size:7 final size:7
Alignment explanation
Indices: 7287--9237 Score: 549
Period size: 7 Copynumber: 274.3 Consensus size: 7
7277 AACCCGAGTT
*
7287 AACCCGA
1 AACCCTA
*
7294 AACCCGA
1 AACCCTA
*
7301 AACCCGA
1 AACCCTA
*
7308 AACCTCGA
1 AACC-CTA
*
7316 AACCCGCA
1 AACCC-TA
*
7324 ATACCCGA
1 A-ACCCTA
*
7332 AACCCGA
1 AACCCTA
*
7339 AATCCCGA
1 AA-CCCTA
7347 AA-CC-A
1 AACCCTA
7352 AA-CCTGA
1 AACCCT-A
*
7359 AACCCGA
1 AACCCTA
7366 AACCCTGA
1 AACCCT-A
*
7374 AACCC-G
1 AACCCTA
7380 AACCCTGA
1 AACCCT-A
*
7388 AACCCGA
1 AACCCTA
*
7395 AACCCGA
1 AACCCTA
* *
7402 AATCCGA
1 AACCCTA
* *
7409 TACCCGA
1 AACCCTA
*
7416 AACCCGA
1 AACCCTA
*
7423 AACCCGA
1 AACCCTA
* *
7430 CACCCGA
1 AACCCTA
*
7437 AACCCGA
1 AACCCTA
*
7444 AACCCGA
1 AACCCTA
*
7451 AACCCGAA
1 AACCC-TA
*
7459 AACCCGA
1 AACCCTA
*
7466 AACCCGA
1 AACCCTA
7473 AACCCTA
1 AACCCTA
**
7480 AACCGGA
1 AACCCTA
* *
7487 ACCCCGA
1 AACCCTA
*
7494 AA-CCGA
1 AACCCTA
*
7500 AACCCTG
1 AACCCTA
*
7507 AACCGCAGA
1 AACC-C-TA
*
7516 AACCCGA
1 AACCCTA
*
7523 AACCCGA
1 AACCCTA
*
7530 AACCCGA
1 AACCCTA
*
7537 ATACCCCGA
1 A-A-CCCTA
*
7546 AACTCCGA
1 AAC-CCTA
*
7554 AACCCGA
1 AACCCTA
*
7561 AACCCGA
1 AACCCTA
*
7568 AACCCGA
1 AACCCTA
*
7575 AACCCGA
1 AACCCTA
*
7582 AACCCGAA
1 AACCC-TA
*
7590 AACCCGA
1 AACCCTA
7597 AACCCGTA
1 AACCC-TA
*
7605 TAACCCGA
1 -AACCCTA
*
7613 AACCCGA
1 AACCCTA
* *
7620 AAACCGA
1 AACCCTA
*
7627 AACCCCGA
1 AA-CCCTA
* *
7635 ACTCTCCGA
1 A-AC-CCTA
7644 AACCCTGA
1 AACCCT-A
*
7652 AACCCGA
1 AACCCTA
*
7659 AACCCGA
1 AACCCTA
*
7666 AA-CCGA
1 AACCCTA
*
7672 AACCCGA
1 AACCCTA
*
7679 AACCCGA
1 AACCCTA
*
7686 AACCTCCGA
1 AA-C-CCTA
*
7695 ATCACCCGA
1 A--ACCCTA
*
7704 AACCC-G
1 AACCCTA
*
7710 CACCCTCGA
1 AACCCT--A
*
7719 AA-CCGA
1 AACCCTA
*
7725 AACCCGA
1 AACCCTA
**
7732 AACCCGC
1 AACCCTA
*
7739 CACCCGATA
1 AACCC--TA
*
7748 AACCCGA
1 AACCCTA
*
7755 AACCCGA
1 AACCCTA
7762 ACACCCTGA
1 A-ACCCT-A
*
7771 AACCCGA
1 AACCCTA
7778 AACGCCGTA
1 AAC-CC-TA
*
7787 AACCC-G
1 AACCCTA
*
7793 AACCCGA
1 AACCCTA
*
7800 AACTCCGA
1 AAC-CCTA
*
7808 AACCCGA
1 AACCCTA
*
7815 AACTCCCAGAA
1 AA--CCC--TA
*
7826 AACCCGA
1 AACCCTA
7833 AACCC-A
1 AACCCTA
*
7839 AACCCGA
1 AACCCTA
7846 AACCC-A
1 AACCCTA
*
7852 AACCACAA
1 AACC-CTA
*
7860 AACCCTC
1 AACCCTA
*
7867 AACCCCA
1 AACCCTA
*
7874 AACCCCA
1 AACCCTA
*
7881 AACCCGCA
1 AACCC-TA
*
7889 AACCCCA
1 AACCCTA
*
7896 AACCCCA
1 AACCCTA
*
7903 AACCC-G
1 AACCCTA
*
7909 AACCCGA
1 AACCCTA
*
7916 AA-CCGA
1 AACCCTA
*
7922 AACCTCGA
1 AACC-CTA
*
7930 AACCCGA
1 AACCCTA
*
7937 ACACCCGA
1 A-ACCCTA
*
7945 AA-CCGA
1 AACCCTA
*
7951 AACCCGA
1 AACCCTA
*
7958 AACCTCGA
1 AACC-CTA
* *
7966 CACCCGA
1 AACCCTA
*
7973 AA--CGA
1 AACCCTA
*
7978 AACCCGA
1 AACCCTA
*
7985 AACCCGA
1 AACCCTA
*
7992 AACCCGA
1 AACCCTA
*
7999 AA--CGA
1 AACCCTA
*
8004 AA-CCGA
1 AACCCTA
8010 AA-CC-A
1 AACCCTA
*
8015 AACCCGA
1 AACCCTA
*
8022 AA-CCGA
1 AACCCTA
*
8028 AACCCGA
1 AACCCTA
*
8035 AACCCAA
1 AACCCTA
*
8042 AACCCCGAAA
1 AA-CCC--TA
8052 AACCC-A
1 AACCCTA
8058 AACCC-A
1 AACCCTA
**
8064 CCCAACCCCC
1 ---AACCCTA
*
8074 AACCCCA
1 AACCCTA
*
8081 AACCCCA
1 AACCCTA
*
8088 AACCCCA
1 AACCCTA
*
8095 AACCCCA
1 AACCCTA
*
8102 AACCCCA
1 AACCCTA
*
8109 AACCCCA
1 AACCCTA
*
8116 AACCCCAA
1 AA-CCCTA
*
8124 AACCCCA
1 AACCCTA
*
8131 AACCCCAA
1 AA-CCCTA
*
8139 AACCCCA
1 AACCCTA
*
8146 AACCCGA
1 AACCCTA
*
8153 AACCCCA
1 AACCCTA
8160 AACCCTA
1 AACCCTA
8167 AACCCTA
1 AACCCTA
*
8174 AACCC-G
1 AACCCTA
8180 AACCCTA
1 AACCCTA
*
8187 AACCCGA
1 AACCCTA
*
8194 AACCCGA
1 AACCCTA
*
8201 AACCCGA
1 AACCCTA
8208 AACCC-A
1 AACCCTA
*
8214 AACCCGA
1 AACCCTA
*
8221 AACCCGA
1 AACCCTA
*
8228 AACCCAA
1 AACCCTA
8235 AACCC--
1 AACCCTA
8240 AACCC-A
1 AACCCTA
*
8246 AACCCCA
1 AACCCTA
*
8253 AACCCCA
1 AACCCTA
*
8260 AACCCCA
1 AACCCTA
*
8267 AACCCCA
1 AACCCTA
*
8274 AACCCCA
1 AACCCTA
*
8281 AACCCCA
1 AACCCTA
8288 AACCC-A
1 AACCCTA
*
8294 AACCCCA
1 AACCCTA
*
8301 AACCCCA
1 AACCCTA
*
8308 AACCCCA
1 AACCCTA
8315 TAACCC-A
1 -AACCCTA
*
8322 AACCCCA
1 AACCCTA
*
8329 AACCCCA
1 AACCCTA
*
8336 AACCCCA
1 AACCCTA
8343 AACCC-A
1 AACCCTA
*
8349 AACCCCA
1 AACCCTA
*
8356 AACCCCA
1 AACCCTA
*
8363 AACCCCA
1 AACCCTA
8370 AACACC-A
1 AAC-CCTA
8377 AACCC-A
1 AACCCTA
*
8383 AACCCCAA
1 AA-CCCTA
*
8391 AACCCCA
1 AACCCTA
*
8398 AACCCCA
1 AACCCTA
*
8405 AACCCCA
1 AACCCTA
*
8412 AACCCCA
1 AACCCTA
*
8419 AACCCCA
1 AACCCTA
*
8426 AACCCCCA
1 AA-CCCTA
*
8434 AACCCCA
1 AACCCTA
*
8441 AACCCCA
1 AACCCTA
8448 AACCC-A
1 AACCCTA
*
8454 AACCCCA
1 AACCCTA
*
8461 AACCCCA
1 AACCCTA
*
8468 AACCCCA
1 AACCCTA
*
8475 AACCCCAA
1 AA-CCCTA
8483 AACCC-A
1 AACCCTA
8489 AACCC-A
1 AACCCTA
*
8495 AACCCCAACA
1 AA-CCC--TA
*
8505 AACCCCA
1 AACCCTA
*
8512 AACCCCA
1 AACCCTA
*
8519 AACCC-C
1 AACCCTA
*
8525 AACCCCA
1 AACCCTA
*
8532 AACCCCA
1 AACCCTA
*
8539 AACCCCA
1 AACCCTA
*
8546 AACCCCA
1 AACCCTA
*
8553 AACCC-C
1 AACCCTA
*
8559 AACCCCA
1 AACCCTA
*
8566 AACCCCA
1 AACCCTA
*
8573 AACCCCAA
1 AA-CCCTA
8581 AACCCTA
1 AACCCTA
*
8588 AACCCCAAA
1 AA-CCC-TA
*
8597 AACCCCA
1 AACCCTA
*
8604 AACCC-C
1 AACCCTA
*
8610 AACCCCA
1 AACCCTA
*
8617 AACCCCA
1 AACCCTA
*
8624 AACCCCA
1 AACCCTA
*
8631 AACCCCA
1 AACCCTA
8638 AACCC-A
1 AACCCTA
8644 AACCCTA
1 AACCCTA
8651 AACCCCTAA
1 AA-CCCT-A
**
8660 AACCCCG
1 AACCCTA
**
8667 AACCCCG
1 AACCCTA
**
8674 AACCCCG
1 AACCCTA
**
8681 AACCCCG
1 AACCCTA
**
8688 AACCCCG
1 AACCCTA
**
8695 AACCCCG
1 AACCCTA
8702 AACCCTA
1 AACCCTA
*
8709 AACCCCA
1 AACCCTA
*
8716 AACCCCA
1 AACCCTA
*
8723 AACCCCA
1 AACCCTA
*
8730 AACCCCA
1 AACCCTA
*
8737 AACCCCA
1 AACCCTA
*
8744 AACCCCA
1 AACCCTA
**
8751 AACTATA
1 AACCCTA
8758 AACCCTA
1 AACCCTA
8765 AACCCT-
1 AACCCTA
**
8771 ATTCCTA
1 AACCCTA
*
8778 AACCCTC
1 AACCCTA
8785 AACCCTA
1 AACCCTA
*
8792 AACCCTC
1 AACCCTA
8799 AACCCTA
1 AACCCTA
8806 AACCCTCA
1 AACCCT-A
*
8814 ACCCCT-
1 AACCCTA
8820 AACCCTAA
1 AACCCT-A
*
8828 AACCCCA
1 AACCCTA
8835 AACCCCTGA
1 AA-CCCT-A
*
8844 AACCCCA
1 AACCCTA
**
8851 AACCCCG
1 AACCCTA
*
8858 AACCCTG
1 AACCCTA
8865 AACCCTTA
1 AACCC-TA
*
8873 TA-CCTA
1 AACCCTA
*
8879 AAACCTCA
1 AACCCT-A
8887 AACCC-A
1 AACCCTA
*
8893 AAACCTCA
1 AACCCT-A
*
8901 ATCCTCTA
1 AACC-CTA
*
8909 AACCCTC
1 AACCCTA
8916 AACCCTA
1 AACCCTA
*
8923 AACCCTC
1 AACCCTA
8930 AACCCTA
1 AACCCTA
8937 AACCCTCA
1 AACCCT-A
*
8945 ACCCCT-
1 AACCCTA
8951 AACCCTAA
1 AACCCT-A
*
8959 AACCCCA
1 AACCCTA
8966 AACCCCTGA
1 AA-CCCT-A
*
8975 AACCCCA
1 AACCCTA
**
8982 AACCCCG
1 AACCCTA
*
8989 AACCCTG
1 AACCCTA
8996 AACCCTTA
1 AACCC-TA
*
9004 TA-CCTA
1 AACCCTA
*
9010 AAACCTCA
1 AACCCT-A
9018 AACCC-A
1 AACCCTA
*
9024 AAACCTCA
1 AACCCT-A
*
9032 ATCCTCTA
1 AACC-CTA
*
9040 AACTCTA
1 AACCCTA
9047 AACCCTA
1 AACCCTA
*
9054 AACCCCCA
1 AA-CCCTA
9062 AA-CCTCA
1 AACCCT-A
* *
9069 AATCTTA
1 AACCCTA
**
9076 CAACTTTAA
1 -AACCCT-A
9085 AACCC-A
1 AACCCTA
*
9091 AACCCCAA
1 AA-CCCTA
9099 AACCC--
1 AACCCTA
*
9104 AACCCCA
1 AACCCTA
*
9111 AACTCTA
1 AACCCTA
*
9118 ATACCTTA
1 A-ACCCTA
*
9126 AACCTTA
1 AACCCTA
* *
9133 AA-CTTC
1 AACCCTA
*
9139 AACCATA
1 AACCCTA
*
9146 CACCCTA
1 AACCCTA
*
9153 ACCCCT-
1 AACCCTA
9159 AACCC-A
1 AACCCTA
* *
9165 GACCTTA
1 AACCCTA
9172 AACCCTA
1 AACCCTA
*
9179 AA-TCTCA
1 AACCCT-A
*
9186 AACTCTA
1 AACCCTA
*
9193 AACTTCTA
1 AAC-CCTA
9201 AACCCTA
1 AACCCTA
*
9208 AACCTTA
1 AACCCTA
* *
9215 ATCTCTA
1 AACCCTA
9222 AACCCTA
1 AACCCTA
*
9229 AATCCTA
1 AACCCTA
9236 AA
1 AA
9238 TTTTTTTTAT
Statistics
Matches: 1635, Mismatches: 173, Indels: 272
0.79 0.08 0.13
Matches are distributed among these distances:
5 28 0.02
6 204 0.12
7 1038 0.63
8 274 0.17
9 79 0.05
10 8 0.00
11 4 0.00
ACGTcount: A:0.41, C:0.46, G:0.06, T:0.06
Consensus pattern (7 bp):
AACCCTA
Found at i:9065 original size:37 final size:37
Alignment explanation
Indices: 9007--9129 Score: 107
Period size: 37 Copynumber: 3.4 Consensus size: 37
8997 ACCCTTATAC
*
9007 CTAAAACCTCAAA-CCCAAAACCTCAATCCTCTAAACT
1 CTAAACCCT-AAACCCCAAAACCTCAATCCTCTAAACT
*
9044 CTAAACCCTAAACCCCCAAACCTCAAAT-CT-TACAACT
1 CTAAACCCTAAACCCCAAAACCTC-AATCCTCTA-AACT
* *
9081 TTAAAACCC-AAACCCCAAAACC-CAA-CC-CCAAACT
1 CT-AAACCCTAAACCCCAAAACCTCAATCCTCTAAACT
*
9115 CTAATACCTTAAACC
1 CTAA-ACCCTAAACC
9130 TTAAACTTCA
Statistics
Matches: 71, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
33 2 0.03
34 8 0.11
35 9 0.13
36 6 0.08
37 37 0.52
38 9 0.13
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (37 bp):
CTAAACCCTAAACCCCAAAACCTCAATCCTCTAAACT
Found at i:9109 original size:13 final size:14
Alignment explanation
Indices: 9083--9112 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
9073 TTACAACTTT
9083 AAAACCCAAACCCC
1 AAAACCCAAACCCC
9097 AAAACCC-AACCCC
1 AAAACCCAAACCCC
9110 AAA
1 AAA
9113 CTCTAATACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.53, C:0.47, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAACCCAAACCCC
Found at i:9578 original size:14 final size:13
Alignment explanation
Indices: 9536--9589 Score: 63
Period size: 14 Copynumber: 4.0 Consensus size: 13
9526 TTGGATCGAG
9536 TTTAGGTTTAAGA
1 TTTAGGTTTAAGA
* * *
9549 TTTTGGTTTGATA
1 TTTAGGTTTAAGA
9562 TTTAGGGTTTAAGA
1 TTTA-GGTTTAAGA
9576 TTTAAGGTTTAAGA
1 TTT-AGGTTTAAGA
9590 ATTAAGGTAC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
13 13 0.39
14 19 0.58
15 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (13 bp):
TTTAGGTTTAAGA
Found at i:9594 original size:14 final size:14
Alignment explanation
Indices: 9567--9597 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
9557 TGATATTTAG
*
9567 GGTTTAAGATTTAA
1 GGTTTAAGAATTAA
9581 GGTTTAAGAATTAA
1 GGTTTAAGAATTAA
9595 GGT
1 GGT
9598 ACAGTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (14 bp):
GGTTTAAGAATTAA
Found at i:9746 original size:20 final size:20
Alignment explanation
Indices: 9721--9789 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
9711 AAGGAAACCA
9721 AAATATAAATAATTAAATTG
1 AAATATAAATAATTAAATTG
* *
9741 AAATATAAA-ACTATAAA-TC
1 AAATATAAATAAT-TAAATTG
*
9760 AAGTATAAATAAATTAAATTG
1 AAATATAAAT-AATTAAATTG
*
9781 AAAAATAAA
1 AAATATAAA
9790 ATAAAAATTA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
19 11 0.29
20 17 0.45
21 10 0.26
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (20 bp):
AAATATAAATAATTAAATTG
Found at i:9892 original size:2 final size:2
Alignment explanation
Indices: 9880--9926 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
9870 TATACAATTT
9880 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9921 TA TA TA
1 TA TA TA
9927 ACAATGAAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13582 original size:88 final size:87
Alignment explanation
Indices: 13383--13639 Score: 354
Period size: 87 Copynumber: 2.9 Consensus size: 87
13373 TAATCAATTG
* * * *
13383 CTCTCATTTGTTTCATTTTTATTTTCGTTTCATTTTAGTTTTAAACTTTTTCTTTATTACCAATA
1 CTCTAATTTGTTTCATTTTTATTTTCTTTTCATTTTAGTTTTAAACTTTTTCCTTATTACCAAAA
* * *
13448 TCTTTAAAATGCATAATTTTAA
66 TCTATAAAATGCATAATGTAAA
* *
13470 CTCTAATTTGTTTTATTTTTATTTTCTTTTCATTTTAGTTTTAAAGTTTTTCCTTATTCACCAAA
1 CTCTAATTTGTTTCATTTTTATTTTCTTTTCATTTTAGTTTTAAACTTTTTCCTTATT-ACCAAA
*
13535 ATCTATAAAAGGCATAATGTAAA
65 ATCTATAAAATGCATAATGTAAA
* * * *
13558 TTCTAATTTGTGTCATTTTTATTTTCTCTTCATTTTAGTTTT-AACTTTTTTCTTATTGACCAAA
1 CTCTAATTTGTTTCATTTTTATTTTCTTTTCATTTTAGTTTTAAACTTTTTCCTTATT-ACCAAA
*
13622 ATCTATAGAATGCATAAT
65 ATCTATAAAATGCATAAT
13640 TTCATGTTAA
Statistics
Matches: 150, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
87 88 0.59
88 62 0.41
ACGTcount: A:0.27, C:0.13, G:0.06, T:0.54
Consensus pattern (87 bp):
CTCTAATTTGTTTCATTTTTATTTTCTTTTCATTTTAGTTTTAAACTTTTTCCTTATTACCAAAA
TCTATAAAATGCATAATGTAAA
Found at i:16770 original size:14 final size:15
Alignment explanation
Indices: 16746--16775 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
16736 TTTTGTTTTA
16746 TATATTATTTTTAAT
1 TATATTATTTTTAAT
16761 TATA-TATTTTTAAT
1 TATATTATTTTTAAT
16775 T
1 T
16776 TAATAATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TATATTATTTTTAAT
Found at i:17472 original size:231 final size:228
Alignment explanation
Indices: 17179--17634 Score: 662
Period size: 231 Copynumber: 2.0 Consensus size: 228
17169 TTTCATTTTT
* *
17179 AATATAGTATTATTTGTTATAGTTTTTATTTTTTTAATTTATCTTGTTACTTTGTTATATTATTT
1 AATATAGTATTATTTGTTACAGTTTTTATTTTTTTAATTTATCTTGTTACTTTATTATATTATTT
* * * * * * *
17244 CAAATTTTGGTTATTATTACTTGCAATAACAATAATAATATAAGAATAATATTCAAATTAGCACT
66 CAAACTCTAGTTATAATTACTTGAAATAACAATAATAATATAAGAATAATATTCAAATAAACACT
* * *
17309 TAAAATTTCACAATTAAAATATATAAGTTTTTATTATTTAATGAGTTCACATAATTAAATTAAA-
131 T-AAATTTCACAATTAAAATATATAAGTTTTCAATATTTAATGACTTCACATAATTAAATTAAAG
*
17373 AGAAATATAATAAATAAATTATATATCTCATTAAA
195 A-AAATATAATAAATAAATGATATATCTCATTAAA
*
17408 AATATAGTATTATTTGTTACAGTTTTTATATTTTTTTAATTTATCTTTTTACTTTATTATATTAT
1 AATATAGTATTATTTGTTACAG-TTTT-TATTTTTTTAATTTATCTTGTTACTTTATTATATTAT
*
17473 TTCAAACTCTAGTTATAATTACTTGAAATAACAATAATAATATAAGAATAATATTTAAATAAACA
64 TTCAAACTCTAGTTATAATTACTTGAAATAACAATAATAATATAAGAATAATATTCAAATAAACA
* * * * * *
17538 CTTAAATTTTATAATTAAAATATTTAAGTTTTCAATATTTGATGACTTCACTTAATTAAGTTAAA
129 CTTAAATTTCACAATTAAAATATATAAGTTTTCAATATTTAATGACTTCACATAATTAAATTAAA
* *
17603 GAAAATATAATTAATAGATGATATATCTCATT
194 GAAAATATAATAAATAAATGATATATCTCATT
17635 GATAATTTTT
Statistics
Matches: 201, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
229 21 0.10
230 84 0.42
231 96 0.48
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (228 bp):
AATATAGTATTATTTGTTACAGTTTTTATTTTTTTAATTTATCTTGTTACTTTATTATATTATTT
CAAACTCTAGTTATAATTACTTGAAATAACAATAATAATATAAGAATAATATTCAAATAAACACT
TAAATTTCACAATTAAAATATATAAGTTTTCAATATTTAATGACTTCACATAATTAAATTAAAGA
AAATATAATAAATAAATGATATATCTCATTAAA
Found at i:18407 original size:21 final size:20
Alignment explanation
Indices: 18372--18414 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
18362 CTCAAATTTT
*
18372 AATCTCAAACTTAAACTATA
1 AATCGCAAACTTAAACTATA
*
18392 AATCGCAAATCTTAAACTTTA
1 AATCGCAAA-CTTAAACTATA
18413 AA
1 AA
18415 CTTTAAACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (20 bp):
AATCGCAAACTTAAACTATA
Found at i:18434 original size:21 final size:21
Alignment explanation
Indices: 18418--18463 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
18408 CTTTAAACTT
18418 TAAACCTCAAATCTTAAATCA
1 TAAACCTCAAATCTTAAATCA
* * *
18439 TGAACCTCAAATCTCAAATCT
1 TAAACCTCAAATCTTAAATCA
18460 TAAA
1 TAAA
18464 TCATGGACCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (21 bp):
TAAACCTCAAATCTTAAATCA
Found at i:18454 original size:28 final size:28
Alignment explanation
Indices: 18423--18486 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
18413 AACTTTAAAC
18423 CTCAAATCTTAAATCATGAACCTCAAAT
1 CTCAAATCTTAAATCATGAACCTCAAAT
*
18451 CTCAAATCTTAAATCATGGACCTCAAAT
1 CTCAAATCTTAAATCATGAACCTCAAAT
*
18479 CTTAAATC
1 CTCAAATC
18487 CTAAGCCTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (28 bp):
CTCAAATCTTAAATCATGAACCTCAAAT
Found at i:18547 original size:7 final size:7
Alignment explanation
Indices: 18526--18576 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
18516 TCCGAAACTC
18526 TAAATCT
1 TAAATCT
*
18533 CAAATCT
1 TAAATCT
18540 TAAATCT
1 TAAATCT
*
18547 TAATTCT
1 TAAATCT
18554 TAAA-CTT
1 TAAATC-T
*
18561 TAAACCT
1 TAAATCT
*
18568 TAAACCT
1 TAAATCT
18575 TA
1 TA
18577 TGCTTTAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
6 1 0.03
7 36 0.95
8 1 0.03
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (7 bp):
TAAATCT
Found at i:18569 original size:14 final size:14
Alignment explanation
Indices: 18552--18818 Score: 103
Period size: 14 Copynumber: 19.7 Consensus size: 14
18542 AATCTTAATT
18552 CTTAAACTTTAAAC
1 CTTAAACTTTAAAC
* **
18566 CTTAAACCTTATGC
1 CTTAAACTTTAAAC
*
18580 TTTAAA-TTCTAAAC
1 CTTAAACTT-TAAAC
*
18594 CTCAAACTTTAAAC
1 CTTAAACTTTAAAC
*
18608 CTTAAACTTGAAA-
1 CTTAAACTTTAAAC
** *
18621 CTCGAACTGTAAAC
1 CTTAAACTTTAAAC
* *
18635 CTCAAAAC--CAAA-
1 CT-TAAACTTTAAAC
* *
18647 CTTTAAC-TCAAAC
1 CTTAAACTTTAAAC
* *
18660 C-TAAAC-CTAAGC
1 CTTAAACTTTAAAC
*
18672 CTTAAACTTTAAAT
1 CTTAAACTTTAAAC
* ** * *
18686 CGTATCCCTTAAAA
1 CTTAAACTTTAAAC
* *
18700 C-TAAGCATTAAA-
1 CTTAAACTTTAAAC
* *
18712 CTTTAACGTTAAAC
1 CTTAAACTTTAAAC
* *
18726 CTTAAACCTCAAAC
1 CTTAAACTTTAAAC
*
18740 TTTAAACTTTAAA-
1 CTTAAACTTTAAAC
18753 CTT-AACTTTTAAA-
1 CTTAAAC-TTTAAAC
18766 CTCTAAACTTTAAAC
1 CT-TAAACTTTAAAC
* *
18781 CCTAAACTTT-CAC
1 CTTAAACTTTAAAC
* *
18794 CTTTAATCTTTAAAT
1 C-TTAAACTTTAAAC
18809 CTTAAACTTT
1 CTTAAACTTT
18819 TATTCTTAAA
Statistics
Matches: 185, Mismatches: 52, Indels: 32
0.69 0.19 0.12
Matches are distributed among these distances:
11 3 0.02
12 18 0.10
13 48 0.26
14 105 0.57
15 11 0.06
ACGTcount: A:0.40, C:0.24, G:0.03, T:0.33
Consensus pattern (14 bp):
CTTAAACTTTAAAC
Found at i:18576 original size:21 final size:21
Alignment explanation
Indices: 18552--18942 Score: 98
Period size: 21 Copynumber: 18.7 Consensus size: 21
18542 AATCTTAATT
18552 CTTAAACTTTAAACCTTAAAC
1 CTTAAACTTTAAACCTTAAAC
** *
18573 CTTATGCTTTAAA-TTCTAAAC
1 CTTAAACTTTAAACCT-TAAAC
*
18594 CTCAAACTTTAAACCTTAAA-
1 CTTAAACTTTAAACCTTAAAC
* *
18614 CTTGAAACTCGAACTGTAAACCTCAAAA
1 CTT-AAACT-----T-TAAACCTTAAAC
* *
18642 C-CAAACTTT-AA-CTCAAAC
1 CTTAAACTTTAAACCTTAAAC
* *
18660 C-TAAAC-CTAAGCCTTAAAC
1 CTTAAACTTTAAACCTTAAAC
* * ** *
18679 TTTAAA-TCGTATCCCTTAAAA
1 CTTAAACT-TTAAACCTTAAAC
* * *
18700 C-TAAGCATTAAA-CTTTAAC
1 CTTAAACTTTAAACCTTAAAC
* * *
18719 GTTAAACCTTAAACCTCAAAC
1 CTTAAACTTTAAACCTTAAAC
*
18740 TTTAAACTTTAAA-CTT-AAC
1 CTTAAACTTTAAACCTTAAAC
* * *
18759 TTTTAAACTCTAAACTTTAAAC
1 -CTTAAACTTTAAACCTTAAAC
* * *
18781 CCTAAACTTT-CACCTTTAATC
1 CTTAAACTTTAAACC-TTAAAC
* * * **
18802 TTTAAA-TCTTAAACTTTTATT
1 CTTAAACT-TTAAACCTTAAAC
*
18823 CTTAAA-TTTTAACCTTTAAAC
1 CTTAAACTTTAAACC-TTAAAC
* *
18844 CTTAAGCTCTT-AACCTTAATC
1 CTTAAACT-TTAAACCTTAAAC
* ** * *
18865 TTTAAACCCTAAACTCATAGAC
1 CTTAAACTTTAAAC-CTTAAAC
* * *
18887 CTTAAA-TTCT-ATCTTTTAAC
1 CTTAAACTT-TAAACCTTAAAC
*
18907 CCTAAACTTTAAACCTTAAAC
1 CTTAAACTTTAAACCTTAAAC
*
18928 CTTAAATTTTAAACC
1 CTTAAACTTTAAACC
18943 GGAACCCCAG
Statistics
Matches: 259, Mismatches: 79, Indels: 64
0.64 0.20 0.16
Matches are distributed among these distances:
17 1 0.00
18 12 0.05
19 16 0.06
20 54 0.21
21 136 0.53
22 21 0.08
23 2 0.01
26 6 0.02
27 10 0.04
28 1 0.00
ACGTcount: A:0.39, C:0.24, G:0.03, T:0.35
Consensus pattern (21 bp):
CTTAAACTTTAAACCTTAAAC
Found at i:18723 original size:13 final size:13
Alignment explanation
Indices: 18723--18848 Score: 56
Period size: 14 Copynumber: 9.2 Consensus size: 13
18713 TTTAACGTTA
* *
18723 AACCTTAAACCTC
1 AACCTTAAACTTT
*
18736 AAACTTTAAACTTT
1 AACCT-TAAACTTT
*
18750 AAACTT-AACTTTT
1 AACCTTAAAC-TTT
*
18763 AAACTCTAAACTTT
1 AACCT-TAAACTTT
*
18777 AAACCCTAAACTTT
1 -AACCTTAAACTTT
* *
18791 CACCTTTAATCTTT
1 AACC-TTAAACTTT
*
18805 AAATCTTAAACTTTT
1 -AACCTTAAAC-TTT
** *
18820 ATTCTTAAATTTT
1 AACCTTAAACTTT
*
18833 AACCTTTAAACCTT
1 AACC-TTAAACTTT
18847 AA
1 AA
18849 GCTCTTAACC
Statistics
Matches: 87, Mismatches: 17, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
12 3 0.03
13 21 0.24
14 52 0.60
15 11 0.13
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (13 bp):
AACCTTAAACTTT
Found at i:18745 original size:34 final size:33
Alignment explanation
Indices: 18552--18789 Score: 112
Period size: 34 Copynumber: 7.1 Consensus size: 33
18542 AATCTTAATT
* * **
18552 CTTAAACTTTAAACCTTAAACCTTATGCTTTAAA
1 CTTAAACCTTAAACC-TAAACTTTAAACTTTAAA
* * * * *
18586 TTCTAAACCTCAAACTTTAAACCTTAAACTTGAAA
1 CT-TAAACCTTAAAC-CTAAACTTTAAACTTTAAA
** *
18621 CTCGAA-CTGTAAACCTCAAAAC--CAAACTTT-AA
1 CTTAAACCT-TAAACCT--AAACTTTAAACTTTAAA
* * *
18653 CTCAAACC-TAAACCTAAGCCTTAAACTTTAAA
1 CTTAAACCTTAAACCTAAACTTTAAACTTTAAA
* ** * * *
18685 TCGTATCCCTTAAAACTAAGCATTAAACTTT-AA
1 -CTTAAACCTTAAACCTAAACTTTAAACTTTAAA
18718 CGTTAAACCTTAAACCTCAAACTTTAAACTTTAAA
1 C-TTAAACCTTAAACCT-AAACTTTAAACTTTAAA
* **
18753 CTT-AACTTTTAAACTCTAAACTTTAAACCCTAAA
1 CTTAAAC-CTTAAAC-CTAAACTTTAAACTTTAAA
18787 CTT
1 CTT
18790 TCACCTTTAA
Statistics
Matches: 156, Mismatches: 32, Indels: 32
0.71 0.15 0.15
Matches are distributed among these distances:
29 3 0.02
31 14 0.09
32 10 0.06
33 30 0.19
34 64 0.41
35 35 0.22
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (33 bp):
CTTAAACCTTAAACCTAAACTTTAAACTTTAAA
Found at i:18833 original size:28 final size:26
Alignment explanation
Indices: 18741--18843 Score: 73
Period size: 28 Copynumber: 3.7 Consensus size: 26
18731 ACCTCAAACT
18741 TTAAACTTTAAACTT-AACTTTTAAAC
1 TTAAACTTTAAACTTAAACTTTT-AAC
* * *
18767 TCTAAACTTTAAACCCTAAACTTTCACC
1 T-TAAACTTTAAA-CTTAAACTTTTAAC
* *
18795 TTTAATCTTTAAATCTTAAACTTTTATTC
1 -TTAAACTTTAAA-CTTAAACTTTTA-AC
* *
18824 TTAAATTTTAACCTTTAAAC
1 TTAAACTTTAAAC-TTAAAC
18844 CTTAAGCTCT
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
26 1 0.02
27 12 0.20
28 39 0.65
29 8 0.13
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (26 bp):
TTAAACTTTAAACTTAAACTTTTAAC
Found at i:18848 original size:14 final size:14
Alignment explanation
Indices: 18831--18872 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
18821 TTCTTAAATT
18831 TTAACCTTTAAACC
1 TTAACCTTTAAACC
*
18845 TTAAGCTCTT-AACC
1 TTAACCT-TTAAACC
*
18859 TTAATCTTTAAACC
1 TTAACCTTTAAACC
18873 CTAAACTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 2 0.08
14 20 0.83
15 2 0.08
ACGTcount: A:0.33, C:0.26, G:0.02, T:0.38
Consensus pattern (14 bp):
TTAACCTTTAAACC
Found at i:18869 original size:35 final size:36
Alignment explanation
Indices: 18707--18869 Score: 88
Period size: 35 Copynumber: 4.7 Consensus size: 36
18697 AAACTAAGCA
* * * * *
18707 TTAAACT-TTAACGTTAAACCTTAAACC-TCAAACT
1 TTAAACTCTTAACCTTAAATCTTTAACCTTTAAACC
* * * * *
18741 TTAAACT-TTAAACTTAACT-TTTAAACTCTAAACT
1 TTAAACTCTTAACCTTAAATCTTTAACCTTTAAACC
* * ** * * *
18775 TTAAAC-CCTAAACTTTCACCTTTAATCTTTAAATC
1 TTAAACTCTTAACCTTAAATCTTTAACCTTTAAACC
* **
18810 TTAAACTTTTATTCTTAAAT-TTTAACCTTTAAACC
1 TTAAACTCTTAACCTTAAATCTTTAACCTTTAAACC
*
18845 TTAAGCTCTTAACCTT-AATCTTTAA
1 TTAAACTCTTAACCTTAAATCTTTAA
18870 ACCCTAAACT
Statistics
Matches: 94, Mismatches: 30, Indels: 9
0.71 0.23 0.07
Matches are distributed among these distances:
33 5 0.05
34 36 0.38
35 47 0.50
36 6 0.06
ACGTcount: A:0.37, C:0.21, G:0.01, T:0.41
Consensus pattern (36 bp):
TTAAACTCTTAACCTTAAATCTTTAACCTTTAAACC
Found at i:18891 original size:35 final size:35
Alignment explanation
Indices: 18852--18942 Score: 89
Period size: 35 Copynumber: 2.6 Consensus size: 35
18842 ACCTTAAGCT
*
18852 CTTAACCTT-AATCTTTAAACCCTAAACTCATAGAC
1 CTTAACCTTAAATCTTTAAACCCTAAACT-ATAAAC
* ** * *
18887 CTTAA-ATTCTATCTTTTAACCCTAAACTTTAAAC
1 CTTAACCTTAAATCTTTAAACCCTAAACTATAAAC
18921 CTTAAACCTTAAAT-TTTAAACC
1 CTT-AACCTTAAATCTTTAAACC
18943 GGAACCCCAG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
34 9 0.20
35 31 0.70
36 4 0.09
ACGTcount: A:0.37, C:0.25, G:0.01, T:0.36
Consensus pattern (35 bp):
CTTAACCTTAAATCTTTAAACCCTAAACTATAAAC
Found at i:19083 original size:14 final size:14
Alignment explanation
Indices: 19037--19088 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
19027 CCCTAAACCT
*
19037 TTAAATCTTAAACA
1 TTAAATCTTAAATA
* *
19051 TTAAACCTTGAATA
1 TTAAATCTTAAATA
* *
19065 CTAAATCTTAAATT
1 TTAAATCTTAAATA
19079 TTAAAT-TTAA
1 TTAAATCTTAA
19089 GTTATAAGCC
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
13 4 0.13
14 26 0.87
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.40
Consensus pattern (14 bp):
TTAAATCTTAAATA
Found at i:22073 original size:14 final size:14
Alignment explanation
Indices: 22054--22158 Score: 66
Period size: 14 Copynumber: 7.0 Consensus size: 14
22044 AAACCTCAAA
22054 CCTAAACTTTAAAC
1 CCTAAACTTTAAAC
22068 CCTAAACTTTAGACCTTAAGC
1 CCTAAACTTT--A----AA-C
22089 CCTAAACTTTAAAC
1 CCTAAACTTTAAAC
* * *
22103 CCCAATCCTTAAAC
1 CCTAAACTTTAAAC
* * *
22117 CATAATCTTCAAAC
1 CCTAAACTTTAAAC
* *
22131 CTTAAACTTCAAAC
1 CCTAAACTTTAAAC
*
22145 CCCAAACTTTAAAC
1 CCTAAACTTTAAAC
22159 TCAAAAACTT
Statistics
Matches: 72, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
14 55 0.76
15 2 0.03
16 1 0.01
19 1 0.01
20 2 0.03
21 11 0.15
ACGTcount: A:0.40, C:0.31, G:0.02, T:0.27
Consensus pattern (14 bp):
CCTAAACTTTAAAC
Found at i:22115 original size:21 final size:21
Alignment explanation
Indices: 22064--22159 Score: 66
Period size: 21 Copynumber: 4.6 Consensus size: 21
22054 CCTAAACTTT
* * **
22064 AAACCCTAAACTTTAGACCTT
1 AAACCTTAAACTTTAAACCCC
* *
22085 AAGCCCTAAACTTTAAACCCC
1 AAACCTTAAACTTTAAACCCC
* ** * **
22106 AATCCTTAAACCATAATCTTC
1 AAACCTTAAACTTTAAACCCC
*
22127 AAACCTTAAACTTCAAACCCC
1 AAACCTTAAACTTTAAACCCC
*
22148 AAACTTTAAACT
1 AAACCTTAAACT
22160 CAAAAACTTA
Statistics
Matches: 56, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.41, C:0.31, G:0.02, T:0.26
Consensus pattern (21 bp):
AAACCTTAAACTTTAAACCCC
Found at i:22262 original size:7 final size:7
Alignment explanation
Indices: 22221--22286 Score: 51
Period size: 7 Copynumber: 9.1 Consensus size: 7
22211 AAGCCCCAAG
*
22221 CCTTAAG
1 CCTTAAA
*
22228 CCCTAAA
1 CCTTAAA
22235 CCCTTAAA
1 -CCTTAAA
*
22243 CCATAAA
1 CCTTAAA
22250 CCTTAAA
1 CCTTAAA
*
22257 CTTTAAAA
1 CCTT-AAA
**
22265 CCCAAAA
1 CCTTAAA
*
22272 CTTTAAA
1 CCTTAAA
22279 CCTTAAA
1 CCTTAAA
22286 C
1 C
22287 TCCAACCTTT
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
7 34 0.77
8 10 0.23
ACGTcount: A:0.44, C:0.30, G:0.02, T:0.24
Consensus pattern (7 bp):
CCTTAAA
Found at i:22265 original size:15 final size:14
Alignment explanation
Indices: 22231--22310 Score: 63
Period size: 15 Copynumber: 5.6 Consensus size: 14
22221 CCTTAAGCCC
**
22231 TAAACCCTTAAACCA
1 TAAA-CCTTAAACTT
22246 TAAACCTTAAACTT
1 TAAACCTTAAACTT
**
22260 TAAAACCCAAAACTT
1 T-AAACCTTAAACTT
22275 TAAACCTTAAAC-T
1 TAAACCTTAAACTT
** *
22288 CCAACCTTTAACTT
1 TAAACCTTAAACTT
22302 TCAAACCTT
1 T-AAACCTT
22311 GAGCCTCGAG
Statistics
Matches: 51, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
13 10 0.20
14 19 0.37
15 22 0.43
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAACCTTAAACTT
Found at i:22509 original size:28 final size:29
Alignment explanation
Indices: 22462--22529 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 29
22452 ATTTTAAACA
*
22462 CTAAACCCT-AATCTTCAAACCTCAATTC
1 CTAAACCCTAAATCTTCAAACCTCAAATC
*
22490 CTAAACCCTAAATAC-T-AAACCTTAAATC
1 CTAAACCCTAAAT-CTTCAAACCTCAAATC
* *
22518 CTAGACTCTAAA
1 CTAAACCCTAAA
22530 CCCAAAACCT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 29 0.85
29 4 0.12
30 1 0.03
ACGTcount: A:0.41, C:0.31, G:0.01, T:0.26
Consensus pattern (29 bp):
CTAAACCCTAAATCTTCAAACCTCAAATC
Found at i:22566 original size:15 final size:15
Alignment explanation
Indices: 22555--22594 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
22545 CTCAAACACT
22555 AAACCTTAAAACCTC
1 AAACCTTAAAACCTC
* *
22570 AAACCTTAAAATCTT
1 AAACCTTAAAACCTC
*
22585 AAACCCTAAA
1 AAACCTTAAA
22595 CTTTAAACTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.23
Consensus pattern (15 bp):
AAACCTTAAAACCTC
Found at i:22571 original size:22 final size:21
Alignment explanation
Indices: 22543--22647 Score: 88
Period size: 22 Copynumber: 4.8 Consensus size: 21
22533 AAAACCTTCG
22543 ACCTCAAACACTAAACCTTAAA
1 ACCTCAAAC-CTAAACCTTAAA
*
22565 ACCTCAAACCTTAAAATCTTAAA
1 ACCTCAAACC-T-AAACCTTAAA
* *
22588 CCCT-AAACTTTAAA-CTTAAA
1 ACCTCAAAC-CTAAACCTTAAA
* * *
22608 GCCCCAAACTCTAAACCTTTAA
1 ACCTCAAAC-CTAAACCTTAAA
22630 ACCTCAAACCTTAAACCT
1 ACCTCAAACC-TAAACCT
22648 CAAACTCCAA
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
20 8 0.12
21 14 0.21
22 34 0.50
23 12 0.18
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (21 bp):
ACCTCAAACCTAAACCTTAAA
Found at i:22652 original size:36 final size:35
Alignment explanation
Indices: 22554--22684 Score: 111
Period size: 36 Copynumber: 3.6 Consensus size: 35
22544 CCTCAAACAC
* * * * *
22554 TAAACCTTAAAACCTCAAACCTTAAAATCTTAAACCC
1 TAAACC-TCAAACCTTAAACCTCAAACTC-TAAACCT
* * *
22591 TAAACTTTAAA-CTTAAAGCCCCAAACTCTAAACCTT
1 TAAACCTCAAACCTTAAA-CCTCAAACTCTAAACC-T
*
22627 TAAACCTCAAACCTTAAACCTCAAACTCCAAACCCT
1 TAAACCTCAAACCTTAAACCTCAAACTCTAAA-CCT
* *
22663 TAACCCTCAAACCTTAAGCCTC
1 TAAACCTCAAACCTTAAACCTC
22685 GAGTGTTGAT
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
35 11 0.14
36 53 0.69
37 13 0.17
ACGTcount: A:0.41, C:0.34, G:0.02, T:0.24
Consensus pattern (35 bp):
TAAACCTCAAACCTTAAACCTCAAACTCTAAACCT
Found at i:22663 original size:22 final size:21
Alignment explanation
Indices: 22634--22674 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
22624 CTTTAAACCT
22634 CAAACCTTAAACCTCAAACTC
1 CAAACCTTAAACCTCAAACTC
*
22655 CAAACCCTTAACCCTCAAAC
1 CAAA-CCTTAAACCTCAAAC
22675 CTTAAGCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (21 bp):
CAAACCTTAAACCTCAAACTC
Found at i:22850 original size:21 final size:21
Alignment explanation
Indices: 22826--22880 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
22816 AACTGCTAAC
*
22826 CTTTAAATCTTAAACCTAAAA
1 CTTTAAATCCTAAACCTAAAA
* *
22847 CTTTAAATCCTAAATCTCAAA
1 CTTTAAATCCTAAACCTAAAA
* *
22868 CCTTAAACCCTAA
1 CTTTAAATCCTAA
22881 TCTTTACACC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (21 bp):
CTTTAAATCCTAAACCTAAAA
Found at i:22895 original size:21 final size:22
Alignment explanation
Indices: 22868--22924 Score: 98
Period size: 21 Copynumber: 2.6 Consensus size: 22
22858 AAATCTCAAA
22868 CCTTAAACCCTAATCTTTACAC
1 CCTTAAACCCTAATCTTTACAC
*
22890 CC-TAAACCCTAACCTTTACAC
1 CCTTAAACCCTAATCTTTACAC
22911 CCTTAAACCCTAAT
1 CCTTAAACCCTAAT
22925 TTCTAAGTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.33, C:0.39, G:0.00, T:0.28
Consensus pattern (22 bp):
CCTTAAACCCTAATCTTTACAC
Found at i:23089 original size:13 final size:13
Alignment explanation
Indices: 23071--23095 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23061 CTTGAAATTT
23071 TAACCCTTACCCC
1 TAACCCTTACCCC
23084 TAACCCTTACCC
1 TAACCCTTACCC
23096 TTAAATCCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (13 bp):
TAACCCTTACCCC
Found at i:23150 original size:19 final size:19
Alignment explanation
Indices: 23123--23174 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
23113 AGTCCTAATC
23123 CTAATCTTAAACCTCAAAT
1 CTAATCTTAAACCTCAAAT
*
23142 CTAACCTTAAACCTCAAAT
1 CTAATCTTAAACCTCAAAT
*
23161 CCAATCTTAAACCT
1 CTAATCTTAAACCT
23175 TAAACCTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.40, C:0.31, G:0.00, T:0.29
Consensus pattern (19 bp):
CTAATCTTAAACCTCAAAT
Found at i:23174 original size:26 final size:26
Alignment explanation
Indices: 23137--23217 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 26
23127 TCTTAAACCT
*
23137 CAAATCTAACCTTAAACCTCAAA-TC
1 CAAACCTAACCTTAAACCTCAAACTC
* * *
23162 CAATCTTAAACCTTAAACCTTAAACTC
1 CAAACCT-AACCTTAAACCTCAAACTC
*
23189 CAAACCTAA-CTTAAACCTCAACCT-
1 CAAACCTAACCTTAAACCTCAAACTC
23213 CAAAC
1 CAAAC
23218 ATTGACCCCC
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
24 5 0.11
25 17 0.37
26 17 0.37
27 7 0.15
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (26 bp):
CAAACCTAACCTTAAACCTCAAACTC
Found at i:23186 original size:33 final size:32
Alignment explanation
Indices: 23144--23206 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 32
23134 CCTCAAATCT
23144 AACCTTAAAC-CTCAAATCC-AATCTTAAACCTTA
1 AACCTTAAACTC-CAAA-CCTAA-CTTAAACCTTA
23177 AACCTTAAACTCCAAACCTAACTTAAACCT
1 AACCTTAAACTCCAAACCTAACTTAAACCT
23207 CAACCTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
32 11 0.39
33 16 0.57
34 1 0.04
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (32 bp):
AACCTTAAACTCCAAACCTAACTTAAACCTTA
Found at i:23688 original size:16 final size:16
Alignment explanation
Indices: 23668--23851 Score: 156
Period size: 16 Copynumber: 11.6 Consensus size: 16
23658 TTCAAGTTGA
*
23668 GGCTTATTCAGGTTCA
1 GGCTTATTCAGGTTCG
* * * *
23684 AGCTTTTTCGGGTTCA
1 GGCTTATTCAGGTTCG
* * * *
23700 GGTTTTTTCAAGTTTG
1 GGCTTATTCAGGTTCG
*
23716 GGCTTATTCAGGTTCA
1 GGCTTATTCAGGTTCG
* *
23732 GGCTTTTTC-GAGTTTG
1 GGCTTATTCAG-GTTCG
* *
23748 AG-TTTTTCAGGTTCG
1 GGCTTATTCAGGTTCG
23763 GGCTTATTCAGGTTCG
1 GGCTTATTCAGGTTCG
* *
23779 GGCTTTTTTAGGTTCG
1 GGCTTATTCAGGTTCG
* *
23795 AGCTTATTCAGGTTTG
1 GGCTTATTCAGGTTCG
*
23811 GGCTTTTTCAGGTTCG
1 GGCTTATTCAGGTTCG
* *
23827 AGCTTATTCAGGTTCA
1 GGCTTATTCAGGTTCG
23843 GGCTTATTC
1 GGCTTATTC
23852 GGGTACAGGT
Statistics
Matches: 131, Mismatches: 34, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
15 12 0.09
16 119 0.91
ACGTcount: A:0.14, C:0.16, G:0.27, T:0.44
Consensus pattern (16 bp):
GGCTTATTCAGGTTCG
Found at i:23739 original size:32 final size:32
Alignment explanation
Indices: 23658--23840 Score: 176
Period size: 32 Copynumber: 5.8 Consensus size: 32
23648 TTCAGACAGG
* * ***
23658 TTCAAGTTGAGGCTTATTCAGGTTCAAGCTTT
1 TTCAGGTTCAGGCTTATTCAGGTTTGGGCTTT
* * * * *
23690 TTCGGGTTCAGGTTTTTTCAAGTTTGGGCTTA
1 TTCAGGTTCAGGCTTATTCAGGTTTGGGCTTT
* *
23722 TTCAGGTTCAGGCTTTTTC-GAGTTTGAG-TTT
1 TTCAGGTTCAGGCTTATTCAG-GTTTGGGCTTT
* *
23753 TTCAGGTTCGGGCTTATTCAGGTTCGGGCTTT
1 TTCAGGTTCAGGCTTATTCAGGTTTGGGCTTT
*
23785 TTTAGGTTC-GAGCTTATTCAGGTTTGGGCTTT
1 TTCAGGTTCAG-GCTTATTCAGGTTTGGGCTTT
23817 TTCAGGTTC-GAGCTTATTCAGGTT
1 TTCAGGTTCAG-GCTTATTCAGGTT
23841 CAGGCTTATT
Statistics
Matches: 125, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
31 25 0.20
32 100 0.80
ACGTcount: A:0.14, C:0.15, G:0.27, T:0.44
Consensus pattern (32 bp):
TTCAGGTTCAGGCTTATTCAGGTTTGGGCTTT
Found at i:23848 original size:48 final size:48
Alignment explanation
Indices: 23668--23851 Score: 196
Period size: 48 Copynumber: 3.9 Consensus size: 48
23658 TTCAAGTTGA
* * * * *
23668 GGCTTATTCAGGTTCAAGCTTTTTCGGGTTCAGGTTTTTTCAAGTTTG
1 GGCTTATTCAGGTTCGAGCTTTTTCAGGTTCAGGCTTATTCAGGTTTG
* * * *
23716 GGCTTATTCAGGTTC-AGGCTTTTTCGAGTTTGA-G-TTTTTCAGGTTCG
1 GGCTTATTCAGGTTCGA-GCTTTTTC-AGGTTCAGGCTTATTCAGGTTTG
* *
23763 GGCTTATTCAGGTTCGGGCTTTTTTAGGTTC-GAGCTTATTCAGGTTTG
1 GGCTTATTCAGGTTCGAGCTTTTTCAGGTTCAG-GCTTATTCAGGTTTG
* *
23811 GGCTTTTTCAGGTTCGAGCTTATTCAGGTTCAGGCTTATTC
1 GGCTTATTCAGGTTCGAGCTTTTTCAGGTTCAGGCTTATTC
23852 GGGTACAGGT
Statistics
Matches: 114, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
46 4 0.04
47 35 0.31
48 70 0.61
49 5 0.04
ACGTcount: A:0.14, C:0.16, G:0.27, T:0.44
Consensus pattern (48 bp):
GGCTTATTCAGGTTCGAGCTTTTTCAGGTTCAGGCTTATTCAGGTTTG
Found at i:25612 original size:2 final size:2
Alignment explanation
Indices: 25605--25642 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
25595 AAATAATGTA
25605 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25643 TCCATGCTCC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26528 original size:20 final size:20
Alignment explanation
Indices: 26503--26553 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
26493 AGACGTATAT
*
26503 ATAAAGAGAGAGTGAGAGAG
1 ATAAAGAGAGAGAGAGAGAG
26523 ATAAAGAGAGAGAGAGAGAG
1 ATAAAGAGAGAGAGAGAGAG
26543 ATAAAGAGAGA
1 ATAAAGAGAGA
26554 ATTAATGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.55, C:0.00, G:0.37, T:0.08
Consensus pattern (20 bp):
ATAAAGAGAGAGAGAGAGAG
Found at i:26543 original size:10 final size:10
Alignment explanation
Indices: 26505--26553 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
26495 ACGTATATAT
26505 AAAGAGAGAG
1 AAAGAGAGAG
** *
26515 TGAGAGAGAT
1 AAAGAGAGAG
26525 AAAGAGAGAG
1 AAAGAGAGAG
* *
26535 AGAGAGAGAT
1 AAAGAGAGAG
26545 AAAGAGAGA
1 AAAGAGAGA
26554 ATTAATGACA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
10 30 1.00
ACGTcount: A:0.55, C:0.00, G:0.39, T:0.06
Consensus pattern (10 bp):
AAAGAGAGAG
Found at i:26771 original size:13 final size:13
Alignment explanation
Indices: 26753--26782 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
26743 GTCTATATGT
26753 ATAACTATATTAA
1 ATAACTATATTAA
26766 ATAACTATATTAA
1 ATAACTATATTAA
26779 ATAA
1 ATAA
26783 AATACGTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAACTATATTAA
Found at i:27022 original size:2 final size:2
Alignment explanation
Indices: 27015--27040 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27005 TCGTTGTAAA
27015 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
27041 TCTTTTCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30272 original size:23 final size:23
Alignment explanation
Indices: 30228--30297 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
30218 AAGATTATAT
30228 TATTAAGTTAA-ATT-T-TTT--
1 TATTAAGTTAATATTATATTTAA
30246 TATTAAGTTAATATTATATTTAA
1 TATTAAGTTAATATTATATTTAA
* *
30269 TATTTATTTAATATCTCATATTTAA
1 TATTAAGTTAATAT-T-ATATTTAA
30294 TATT
1 TATT
30298 TAATTTATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
18 11 0.26
19 3 0.07
20 1 0.02
21 3 0.07
23 12 0.28
24 1 0.02
25 12 0.28
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTAAGTTAATATTATATTTAA
Found at i:30295 original size:25 final size:24
Alignment explanation
Indices: 30248--30321 Score: 80
Period size: 23 Copynumber: 3.1 Consensus size: 24
30238 AATTTTTTTA
*
30248 TTAAGTTAATATTATATTTAATAT
1 TTAATTTAATATTATATTTAATAT
30272 TT-ATTTAATATCTCATATTTAATAT
1 TTAATTTAATAT-T-ATATTTAATAT
* * *
30297 TTAATTTATTTTTA-ATTGAATAT
1 TTAATTTAATATTATATTTAATAT
30320 TT
1 TT
30322 TGATTAAACC
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
23 18 0.42
24 4 0.09
25 14 0.33
26 7 0.16
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (24 bp):
TTAATTTAATATTATATTTAATAT
Found at i:30617 original size:6 final size:6
Alignment explanation
Indices: 30603--30632 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
30593 TATAATTTTA
*
30603 TGATAT TGATGT TGATAT TGATAT TGATAT
1 TGATAT TGATAT TGATAT TGATAT TGATAT
30633 GAGGCTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (6 bp):
TGATAT
Found at i:31479 original size:2 final size:2
Alignment explanation
Indices: 31472--31502 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
31462 ATCCAGTACC
31472 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
31503 AATGCTGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:31985 original size:14 final size:15
Alignment explanation
Indices: 31966--31998 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
31956 CAGTAAGGTA
*
31966 AATATTT-ATGTATT
1 AATATTTAACGTATT
31980 AATATTTAACGTATT
1 AATATTTAACGTATT
31995 AATA
1 AATA
31999 ATAAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (15 bp):
AATATTTAACGTATT
Found at i:36165 original size:15 final size:16
Alignment explanation
Indices: 36141--36182 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
36131 TGTTTTTGGC
*
36141 TTGATGTCGATTA-CA
1 TTGATTTCGATTATCA
36156 TTGATTTCGATTTATCA
1 TTGATTTCGA-TTATCA
36173 TT-ATTTCGAT
1 TTGATTTCGAT
36183 ATGATCCCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 10 0.42
16 10 0.42
17 4 0.17
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (16 bp):
TTGATTTCGATTATCA
Found at i:41766 original size:21 final size:21
Alignment explanation
Indices: 41741--41780 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
41731 TATTTAATTT
41741 TTAATATAATCAAATAATTGA
1 TTAATATAATCAAATAATTGA
* * *
41762 TTAATCTATTCAACTAATT
1 TTAATATAATCAAATAATT
41781 AAATAGTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.10, G:0.03, T:0.42
Consensus pattern (21 bp):
TTAATATAATCAAATAATTGA
Found at i:45023 original size:20 final size:20
Alignment explanation
Indices: 44998--45094 Score: 176
Period size: 20 Copynumber: 4.8 Consensus size: 20
44988 TTTTTGACAA
44998 CTTTGTATCGATACATCGAT
1 CTTTGTATCGATACATCGAT
45018 CTTTGTATCGATACATCGAT
1 CTTTGTATCGATACATCGAT
45038 CTTTGTATCGATACATCGAT
1 CTTTGTATCGATACATCGAT
*
45058 CTTTGTATCGATACATTGAT
1 CTTTGTATCGATACATCGAT
*
45078 CTTTATATCGATACATC
1 CTTTGTATCGATACATC
45095 TAGGAAGTTT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 74 1.00
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (20 bp):
CTTTGTATCGATACATCGAT
Found at i:47486 original size:51 final size:51
Alignment explanation
Indices: 47430--47615 Score: 293
Period size: 51 Copynumber: 3.6 Consensus size: 51
47420 TTAAGTTTCT
*
47430 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTA-TTTCTAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACAC
* * * *
47481 TAATTTTCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCGAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
* *
47532 CAATTTTTCATAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
47583 CAATTTTTCACAATCGGGGATACTCCAACCCCG
1 CAATTTTTCACAATCGGGGATACTCCAACCCCG
47616 TTATTTCCGA
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
51 119 0.97
52 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACAC
Found at i:47678 original size:79 final size:79
Alignment explanation
Indices: 47585--47801 Score: 371
Period size: 79 Copynumber: 2.7 Consensus size: 79
47575 CAAAACACCA
* * *
47585 ATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGGCTTTA
1 ATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTA
47650 TTCCTAAAATATTG
66 TTCCTAAAATATTG
*
47664 ATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGGTACTCCAACCCCGACTTTA
1 ATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTA
47729 TTCCTAAAATATTG
66 TTCCTAAAATATTG
* **
47743 ATTTCTCGCAATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCG
1 ATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCG
47802 TTATTATCTC
Statistics
Matches: 130, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 130 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (79 bp):
ATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTA
TTCCTAAAATATTG
Found at i:50628 original size:22 final size:23
Alignment explanation
Indices: 50598--50644 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
50588 AATAAAAATC
* *
50598 ATAATAAAATAAAAAGAT-TAAA
1 ATAAAAAAATAAAAACATATAAA
50620 ATAAAAAAATAAAAACATATAAA
1 ATAAAAAAATAAAAACATATAAA
50643 AT
1 AT
50645 GTATGTGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (23 bp):
ATAAAAAAATAAAAACATATAAA
Found at i:50965 original size:20 final size:20
Alignment explanation
Indices: 50942--50983 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
50932 TAAAATTTTT
50942 AAAATTTAAAAAATTAATTA
1 AAAATTTAAAAAATTAATTA
50962 AAAATTTAAAAAATTAATTA
1 AAAATTTAAAAAATTAATTA
50982 AA
1 AA
50984 TATAATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATTTAAAAAATTAATTA
Found at i:52877 original size:48 final size:48
Alignment explanation
Indices: 52821--52919 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
52811 AACTTTTTGC
52821 AATTTAATCTAGTCATTATATTGAATGATAGAGCTGAAATGATATCTG
1 AATTTAATCTAGTCATTATATTGAATGATAGAGCTGAAATGATATCTG
*
52869 AATTTAATCTAGTCATTGTATTGAATGATAGAGCTGAAATGATATCTG
1 AATTTAATCTAGTCATTATATTGAATGATAGAGCTGAAATGATATCTG
52917 AAT
1 AAT
52920 GAAGATGATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.37
Consensus pattern (48 bp):
AATTTAATCTAGTCATTATATTGAATGATAGAGCTGAAATGATATCTG
Found at i:55116 original size:13 final size:14
Alignment explanation
Indices: 55064--55116 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
55054 ATATTGTTTA
*
55064 TTATTATCTAATTT
1 TTATTAACTAATTT
*
55078 TTA--ATCTAAATTT
1 TTATTAACT-AATTT
55091 TTATTAACTAATTT
1 TTATTAACTAATTT
55105 TTATTAAC-AATT
1 TTATTAACTAATT
55117 ATGTTCCAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
12 4 0.11
13 12 0.34
14 16 0.46
15 3 0.09
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (14 bp):
TTATTAACTAATTT
Found at i:56203 original size:2 final size:2
Alignment explanation
Indices: 56196--56221 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
56186 TACTTTCGGA
56196 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
56222 GGTTAACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60569 original size:27 final size:25
Alignment explanation
Indices: 60528--60578 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
60518 ATATTGTTTA
60528 TTATTAACTAATTTTTAATCTAAATTT
1 TTATTAACTAATTTTT-AT-TAAATTT
60555 TTATTAAC-AATTTTTTATTAAATT
1 TTATTAACTAA-TTTTTATTAAATT
60579 AAAATATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.26
26 4 0.17
27 13 0.57
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (25 bp):
TTATTAACTAATTTTTATTAAATTT
Found at i:62065 original size:13 final size:13
Alignment explanation
Indices: 62023--62079 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
62013 AAAGAATATT
*
62023 ATTAAATTATTAAAT
1 ATTAAATTA--AAAA
62038 ATTAAATTAAAAAA
1 ATTAAATT-AAAAA
**
62052 ATTATTTTAAAAA
1 ATTAAATTAAAAA
*
62065 AATAAATTAAAAA
1 ATTAAATTAAAAA
62078 AT
1 AT
62080 AATATAGGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
13 16 0.47
14 9 0.26
15 8 0.24
16 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAATTAAAAA
Found at i:62077 original size:14 final size:13
Alignment explanation
Indices: 62040--62078 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
62030 TATTAAATAT
62040 TAAATTAAAAAAA
1 TAAATTAAAAAAA
**
62053 TTATTTTAAAAAAA
1 -TAAATTAAAAAAA
62067 TAAATTAAAAAA
1 TAAATTAAAAAA
62079 TAATATAGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAATTAAAAAAA
Found at i:62479 original size:16 final size:16
Alignment explanation
Indices: 62448--62480 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
62438 CCTTTTCAAT
62448 TTATTATTTTATATAA
1 TTATTATTTTATATAA
62464 TTATT-TTTTATGATAA
1 TTATTATTTTAT-ATAA
62480 T
1 T
62481 AAGTATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (16 bp):
TTATTATTTTATATAA
Found at i:63592 original size:16 final size:15
Alignment explanation
Indices: 63558--63600 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
63548 AACATAATAA
63558 AAAATATTAAATTATT
1 AAAA-ATTAAATTATT
*
63574 AAAAATTAAATTTTAT
1 AAAAATTAAATTAT-T
*
63590 AAAAAATAAAT
1 AAAAATTAAAT
63601 GAAACAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAAATTAAATTATT
Found at i:67242 original size:13 final size:13
Alignment explanation
Indices: 67224--67248 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67214 CATAAAGTAT
67224 TGTATCGATACAA
1 TGTATCGATACAA
67237 TGTATCGATACA
1 TGTATCGATACA
67249 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:67261 original size:19 final size:18
Alignment explanation
Indices: 67202--67290 Score: 100
Period size: 19 Copynumber: 5.1 Consensus size: 18
67192 ATTTCAACGA
67202 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
67221 TATTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
67237 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
67253 TGTTGTATCGATACATAAG
1 T-TTGTATCGATACATAAG
67272 TTTTGTATCGATACA-AAG
1 -TTTGTATCGATACATAAG
67290 T
1 T
67291 AAGCTACTGC
Statistics
Matches: 62, Mismatches: 0, Indels: 18
0.77 0.00 0.22
Matches are distributed among these distances:
13 11 0.18
15 2 0.03
17 3 0.05
18 3 0.05
19 30 0.48
20 13 0.21
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:67264 original size:32 final size:33
Alignment explanation
Indices: 67204--67267 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
67194 TTCAACGATT
67204 TGTATCGATACATAAAGTATTGTATCGATACAA
1 TGTATCGATACATAAAGTATTGTATCGATACAA
*
67237 TGTATCGATACAT-AAGTGTTGTATCGATACA
1 TGTATCGATACATAAAGTATTGTATCGATACA
67268 TAAGTTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATAAAGTATTGTATCGATACAA
Found at i:67330 original size:21 final size:21
Alignment explanation
Indices: 67305--67363 Score: 118
Period size: 21 Copynumber: 2.8 Consensus size: 21
67295 TACTGCCAAA
67305 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
67326 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
67347 AAATGTATCGATACATT
1 AAATGTATCGATACATT
67364 GTATCGATAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAATGTATCGATACATTACTC
Found at i:67368 original size:13 final size:13
Alignment explanation
Indices: 67350--67374 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67340 ATTACTCAAA
67350 TGTATCGATACAT
1 TGTATCGATACAT
67363 TGTATCGATACA
1 TGTATCGATACA
67375 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:70863 original size:20 final size:20
Alignment explanation
Indices: 70838--70877 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
70828 CTGAAGACAA
70838 AAAGAGATCCCATGATCAAT
1 AAAGAGATCCCATGATCAAT
70858 AAAGAGATCCCATGATCAAT
1 AAAGAGATCCCATGATCAAT
70878 CCCTTTTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (20 bp):
AAAGAGATCCCATGATCAAT
Found at i:76042 original size:12 final size:11
Alignment explanation
Indices: 76002--76046 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
75992 AGCACAACAC
76002 AAAA-AATA-A
1 AAAATAATATA
76011 AAAATAAT-TA
1 AAAATAATATA
76021 AAATATAATATGA
1 AAA-ATAATAT-A
76034 AAAATAATATA
1 AAAATAATATA
76045 AA
1 AA
76047 TATGATACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
9 4 0.13
10 7 0.23
11 8 0.26
12 8 0.26
13 4 0.13
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (11 bp):
AAAATAATATA
Found at i:76050 original size:18 final size:17
Alignment explanation
Indices: 76023--76085 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 17
76013 AATAATTAAA
76023 ATAT-AATATGAAAAAT
1 ATATAAATATGAAAAAT
76039 AATATAAATATGATACAAAT
1 -ATATAAATATGA-A-AAAT
*
76059 ATATGAACATAT-TAAAAT
1 ATAT-AA-ATATGAAAAAT
76077 ATATAAATA
1 ATATAAATA
76086 AATTTAAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
16 3 0.08
17 6 0.15
18 15 0.38
19 6 0.15
20 6 0.15
21 4 0.10
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (17 bp):
ATATAAATATGAAAAAT
Found at i:76059 original size:17 final size:17
Alignment explanation
Indices: 76020--76061 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
76010 AAAAATAATT
76020 AAAATAT-AATATGAAA
1 AAAATATAAATATGAAA
*
76036 AATAATATAAATATGATA
1 AA-AATATAAATATGAAA
*
76054 CAAATATA
1 AAAATATA
76062 TGAACATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (17 bp):
AAAATATAAATATGAAA
Found at i:76171 original size:22 final size:21
Alignment explanation
Indices: 76006--76186 Score: 74
Period size: 19 Copynumber: 9.0 Consensus size: 21
75996 CAACACAAAA
*
76006 AATAAAAAATAAT-TAAAATAT
1 AATATAAAATAATAT-AAATAT
76027 AATATGAAAAATAATATAAATAT
1 AATAT--AAAATAATATAAATAT
* * * *
76050 GATA-CAAAT-ATATGAACAT
1 AATATAAAATAATATAAATAT
76069 -AT-TAAAAT-ATATAAATA-
1 AATATAAAATAATATAAATAT
* *
76086 AAT-TTAAAT--TACAAATA-
1 AATATAAAATAATATAAATAT
*
76103 AA-ATAAACACAA-ACGTAATATAT
1 AATATAAA-ATAATA--TAA-ATAT
76126 AA-A-AAAATAATA-AAACTAT
1 AATATAAAATAATATAAA-TAT
76145 AATATCAAAATAATATAAATAT
1 AATAT-AAAATAATATAAATAT
*
76167 TATAT-AAAT-ATATAAATAT
1 AATATAAAATAATATAAATAT
76186 A
1 A
76187 TTTAAATATT
Statistics
Matches: 125, Mismatches: 16, Indels: 40
0.69 0.09 0.22
Matches are distributed among these distances:
17 12 0.10
18 22 0.18
19 26 0.21
20 9 0.07
21 9 0.07
22 23 0.18
23 23 0.18
24 1 0.01
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (21 bp):
AATATAAAATAATATAAATAT
Found at i:76187 original size:10 final size:10
Alignment explanation
Indices: 76152--76216 Score: 59
Period size: 10 Copynumber: 6.9 Consensus size: 10
76142 TATAATATCA
76152 AAATA-ATAT
1 AAATATATAT
76161 AAATAT-TAT
1 AAATATATAT
76170 ATAA-ATATAT
1 A-AATATATAT
*
76180 AAATATATTT
1 AAATATATAT
76190 AAATAT-T-T
1 AAATATATAT
*
76198 AAATTTATAT
1 AAATATATAT
*
76208 AAATTTATA
1 AAATATATA
76217 ATATTTTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 11
0.79 0.03 0.18
Matches are distributed among these distances:
8 6 0.12
9 15 0.31
10 27 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
AAATATATAT
Found at i:76194 original size:18 final size:18
Alignment explanation
Indices: 76152--76217 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
76142 TATAATATCA
76152 AAATAATATAAATATTATAT
1 AAAT-ATATAAATA-TATAT
*
76172 AAATATATAAATATATTT
1 AAATATATAAATATATAT
* *
76190 AAATATTTAAATTTATAT
1 AAATATATAAATATATAT
*
76208 AAATTTATAA
1 AAATATATAA
76218 TATTTTTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
18 27 0.68
19 9 0.22
20 4 0.10
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATATATAAATATATAT
Found at i:76339 original size:9 final size:9
Alignment explanation
Indices: 76327--76373 Score: 51
Period size: 9 Copynumber: 5.0 Consensus size: 9
76317 TTTCCTCTCT
76327 TTTTCTTTC
1 TTTTCTTTC
76336 TTTTCTTTC
1 TTTTCTTTC
76345 -TTTCTTTC
1 TTTTCTTTC
*
76353 TCCTTTCCTTC
1 T--TTTCTTTC
76364 TTTCTCTTTC
1 TTT-TCTTTC
76374 CACCTCACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
8 8 0.25
9 11 0.34
10 5 0.16
11 8 0.25
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:76346 original size:19 final size:20
Alignment explanation
Indices: 76316--76373 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 20
76306 TTTCCCTCTC
76316 CTTTCCTCTCTTTTTCTTTCT
1 CTTTCCT-TCTTTTTCTTTCT
*
76337 -TTT-CTT-TCTTTCTTTCT
1 CTTTCCTTCTTTTTCTTTCT
*
76354 CCTTTCCTTCTTTCTCTTTC
1 -CTTTCCTTCTTTTTCTTTC
76374 CACCTCACTC
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
17 10 0.33
18 1 0.03
19 5 0.17
20 6 0.20
21 8 0.27
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (20 bp):
CTTTCCTTCTTTTTCTTTCT
Found at i:82437 original size:2 final size:2
Alignment explanation
Indices: 82432--82458 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
82422 ATATATATAT
82432 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
82459 CATAGATGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:82627 original size:2 final size:2
Alignment explanation
Indices: 82620--82647 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
82610 TTATCAATCA
82620 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82648 GTCTTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83691 original size:5 final size:5
Alignment explanation
Indices: 83681--83717 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
83671 CTAAACGGTA
*
83681 AACAG AACAG AACAG AACAG AACAG AACAG GACAG AA
1 AACAG AACAG AACAG AACAG AACAG AACAG AACAG AA
83718 TAGGTATTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.59, C:0.19, G:0.22, T:0.00
Consensus pattern (5 bp):
AACAG
Found at i:86650 original size:2 final size:2
Alignment explanation
Indices: 86643--86673 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
86633 GATCAAGATC
86643 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86674 GAGAGAGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86678 original size:2 final size:2
Alignment explanation
Indices: 86673--86709 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
86663 ATATATATAT
* *
86673 AG AG AG AG AG AG AG AG AG AG AG AG AG AA AG AA AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
86710 TTTTGAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.57, C:0.00, G:0.43, T:0.00
Consensus pattern (2 bp):
AG
Found at i:88321 original size:2 final size:2
Alignment explanation
Indices: 88314--88349 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
88304 ACATGTAGTT
88314 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
88350 CCATTATGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91841 original size:2 final size:2
Alignment explanation
Indices: 91834--91861 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
91824 TTTGTTAGTT
91834 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
91862 GAAGGGATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:95651 original size:2 final size:2
Alignment explanation
Indices: 95644--95680 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
95634 TGAACATAAA
95644 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
95681 ACATGATGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:99455 original size:2 final size:2
Alignment explanation
Indices: 99448--99473 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
99438 TACATGCAGA
99448 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
99474 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:101179 original size:2 final size:2
Alignment explanation
Indices: 101161--101194 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
101151 TGTACGCAGG
* *
101161 TA TA TT TA TA CA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
101195 GTCGATGATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:104439 original size:2 final size:2
Alignment explanation
Indices: 104432--104457 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
104422 CATGTTTGCT
104432 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
104458 ATGCATGTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:108788 original size:12 final size:13
Alignment explanation
Indices: 108763--108803 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
108753 ATAATGCCAT
108763 TGCAGCATGCACA
1 TGCAGCATGCACA
*
108776 TGCA-CATGTACA
1 TGCAGCATGCACA
*
108788 TGCAG-ATGCAAA
1 TGCAGCATGCACA
108800 TGCA
1 TGCA
108804 AATGCTATGC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 20 0.83
13 4 0.17
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (13 bp):
TGCAGCATGCACA
Found at i:116295 original size:2 final size:2
Alignment explanation
Indices: 116288--116316 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
116278 AGTAGAGCGC
116288 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
116317 ATGTGAAGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:117632 original size:24 final size:23
Alignment explanation
Indices: 117592--117639 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 23
117582 AAATTATGTG
* *
117592 TTAATTTAGTAATTATATTTTAA
1 TTAATTTAATAATTATATATTAA
117615 TTAATTTATATAATTATATATTAA
1 TTAATTTA-ATAATTATATATTAA
117639 T
1 T
117640 ATTAATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TTAATTTAATAATTATATATTAA
Found at i:117643 original size:26 final size:23
Alignment explanation
Indices: 117592--117647 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
117582 AAATTATGTG
* *
117592 TTAATTTAGTAATTATATTTTAA
1 TTAATTTAATAATTATATTTAAA
117615 TTAATTTATATAATTATATATTAATA
1 TTAATTTA-ATAATTATAT-TTAA-A
117641 TTAATTT
1 TTAATTT
117648 TTAAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 8 0.29
24 9 0.32
25 3 0.11
26 8 0.29
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
TTAATTTAATAATTATATTTAAA
Found at i:118374 original size:33 final size:33
Alignment explanation
Indices: 118337--118408 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
118327 AAAATGGAAT
* * *
118337 AGCAGAAGT-AGAATAGGAAAGAAACACATCAAA
1 AGCAGAAGTAAAAAAAGG-AAGAAACACAGCAAA
* *
118370 AGCAGATGTAAAAAAAGGAAGAAACATAGCAAA
1 AGCAGAAGTAAAAAAAGGAAGAAACACAGCAAA
118403 AGCAGA
1 AGCAGA
118409 GAAAAATCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
33 27 0.82
34 6 0.18
ACGTcount: A:0.58, C:0.11, G:0.22, T:0.08
Consensus pattern (33 bp):
AGCAGAAGTAAAAAAAGGAAGAAACACAGCAAA
Found at i:129073 original size:2 final size:2
Alignment explanation
Indices: 129068--129112 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
129058 ATTGATCAAC
*
129068 TA TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
129110 TA T
1 TA T
129113 CCAGGACCTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:132504 original size:33 final size:33
Alignment explanation
Indices: 132467--132531 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
132457 GGCAGAAAAG
* *
132467 CAGGAACCACTTTCAGTAGTAGTGGAAAACTGA
1 CAGGAACCACTTTCAGTAGTAGAGAAAAACTGA
*
132500 CAGGAACCACTTTCATTAGTAGAGAAAAACTG
1 CAGGAACCACTTTCAGTAGTAGAGAAAAACTG
132532 GTTTCAAGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (33 bp):
CAGGAACCACTTTCAGTAGTAGAGAAAAACTGA
Found at i:137549 original size:33 final size:33
Alignment explanation
Indices: 137484--137545 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
137474 TGGCAGAAAA
137484 ACAGGAACCACTTTCAGTAGTAGTGGAAAACTG
1 ACAGGAACCACTTTCAGTAGTAGTGGAAAACTG
*
137517 ACAGGAACCACTTTCATTAGTAG-GGAAAA
1 ACAGGAACCACTTTCAGTAGTAGTGGAAAA
137546 ACTGGTTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 6 0.21
33 22 0.79
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.21
Consensus pattern (33 bp):
ACAGGAACCACTTTCAGTAGTAGTGGAAAACTG
Found at i:138103 original size:17 final size:17
Alignment explanation
Indices: 138083--138116 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
138073 TTTGCCTTCA
138083 TTTATTTT-TCTGTTTTT
1 TTTATTTTGT-TGTTTTT
138100 TTTATTTTGTTGTTTTT
1 TTTATTTTGTTGTTTTT
138117 ATTGTGCATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.94
18 1 0.06
ACGTcount: A:0.06, C:0.03, G:0.09, T:0.82
Consensus pattern (17 bp):
TTTATTTTGTTGTTTTT
Found at i:142057 original size:25 final size:27
Alignment explanation
Indices: 141979--142059 Score: 71
Period size: 31 Copynumber: 3.0 Consensus size: 27
141969 CTCGACTTTT
*
141979 ATAAATAAATTTATATTTTATATAATTATTA
1 ATAAATAAATTGATA--TTATAT--TTATTA
*
142010 ATAAATAAGTTGATATTAT-TTTATTA
1 ATAAATAAATTGATATTATATTTATTA
142036 A-AAATAAAATT-AT-TTATATTTATT
1 ATAAAT-AAATTGATATTATATTTATT
142060 TTTTTATTGA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
24 4 0.09
25 12 0.27
26 11 0.24
28 1 0.02
29 4 0.09
31 13 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
ATAAATAAATTGATATTATATTTATTA
Found at i:145856 original size:3 final size:3
Alignment explanation
Indices: 145848--145878 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
145838 GCGGAAACAC
145848 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
145879 TTTTAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:146663 original size:21 final size:22
Alignment explanation
Indices: 146638--146678 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
146628 TTGGTGATGG
146638 AGTTTAAA-AATTAATTTTATT
1 AGTTTAAATAATTAATTTTATT
*
146659 AGTTTAAATAATTATTTTTA
1 AGTTTAAATAATTAATTTTA
146679 AAAAATATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (22 bp):
AGTTTAAATAATTAATTTTATT
Found at i:146945 original size:22 final size:22
Alignment explanation
Indices: 146905--146946 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
146895 CATGTATTAA
* **
146905 AAAATTAAAAAATTTAATTATT
1 AAAATAAAAAAATAAAATTATT
146927 AAAATAAAAAAATAAAATTA
1 AAAATAAAAAAATAAAATTA
146947 ATAATTAGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAAAAAAATAAAATTATT
Found at i:147970 original size:2 final size:2
Alignment explanation
Indices: 147963--147996 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
147953 GCTTTATCAG
*
147963 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
147997 GGCCATCACC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:148444 original size:32 final size:31
Alignment explanation
Indices: 148381--148463 Score: 103
Period size: 32 Copynumber: 2.5 Consensus size: 31
148371 ATTATATTTA
*
148381 TAATATTATATATTTATATAAATTTTAATAAAT
1 TAATATT-TATA-TTATATAAAATTTAATAAAT
*
148414 TAATAATTTATATTATATAAAATTTGATAAAT
1 TAAT-ATTTATATTATATAAAATTTAATAAAT
*
148446 TTATATTTAATATTATAT
1 TAATATTT-ATATTATAT
148464 TTTAATCTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
31 4 0.09
32 30 0.67
33 8 0.18
34 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (31 bp):
TAATATTTATATTATATAAAATTTAATAAAT
Found at i:148463 original size:12 final size:13
Alignment explanation
Indices: 148446--148524 Score: 58
Period size: 12 Copynumber: 6.2 Consensus size: 13
148436 TTTGATAAAT
148446 TTATATTTA-ATA
1 TTATATTTATATA
*
148458 TTATATTT-TAATC
1 TTATATTTAT-ATA
* *
148471 TTTTATTTAT-TT
1 TTATATTTATATA
* *
148483 TTAT-TTTATTTT
1 TTATATTTATATA
148495 TTATATTATATATA
1 TTATATT-TATATA
148509 TATATATTTATATA
1 T-TATATTTATATA
148523 TT
1 TT
148525 TCATATTGTA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
11 5 0.09
12 18 0.33
13 12 0.22
14 13 0.24
15 6 0.11
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (13 bp):
TTATATTTATATA
Found at i:148525 original size:8 final size:8
Alignment explanation
Indices: 148373--148530 Score: 56
Period size: 8 Copynumber: 20.4 Consensus size: 8
148363 ACGATATAAT
148373 TATATTTA
1 TATATTTA
148381 TA-ATATTA
1 TATAT-TTA
148389 TATATTTA
1 TATATTTA
148397 TATAAATTTTAA
1 TAT--A-TTT-A
* *
148409 TAAATTAA
1 TATATTTA
148417 TA-ATTTA
1 TATATTTA
*
148424 TAT-TATA
1 TATATTTA
*
148431 TAAAATTTGA
1 T-ATATTT-A
*
148441 TA-AATT-
1 TATATTTA
148447 TATATTTA
1 TATATTTA
148455 -ATA-TTA
1 TATATTTA
148461 TAT-TTTA
1 TATATTTA
*
148468 -ATCTTTTA
1 TAT-ATTTA
*
148476 TTTATTT-
1 TATATTTA
148483 T-TATTT-
1 TATATTTA
*
148489 TAT-TTTT
1 TATATTTA
148496 TATA-TTA
1 TATATTTA
*
148503 TATATATA
1 TATATTTA
148511 TATATTTA
1 TATATTTA
148519 TATATTTCA
1 TATATTT-A
148528 TAT
1 TAT
148531 TGTAAGTAAC
Statistics
Matches: 115, Mismatches: 13, Indels: 43
0.67 0.08 0.25
Matches are distributed among these distances:
6 16 0.14
7 34 0.30
8 43 0.37
9 12 0.10
10 4 0.03
11 3 0.03
12 3 0.03
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (8 bp):
TATATTTA
Found at i:158339 original size:2 final size:2
Alignment explanation
Indices: 158332--158367 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
158322 ATAACAGTAG
158332 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
158368 AAATACACTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:165481 original size:3 final size:3
Alignment explanation
Indices: 165473--165500 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
165463 GTTTACCTTC
165473 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
165501 CATACAACGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:167014 original size:2 final size:2
Alignment explanation
Indices: 167007--167037 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
166997 TTTGACAATG
167007 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
167038 GAGAAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:173600 original size:18 final size:18
Alignment explanation
Indices: 173569--173619 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
173559 ATAACTTATA
*
173569 TTATAAATTTTAAAATAT
1 TTATAAATTATAAAATAT
*
173587 TTATATATTATAAAAT-T
1 TTATAAATTATAAAATAT
*
173604 TTAGAAATTA-AAAATA
1 TTATAAATTATAAAATA
173620 ATCAAATGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 5 0.18
17 9 0.32
18 14 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
TTATAAATTATAAAATAT
Found at i:173693 original size:13 final size:13
Alignment explanation
Indices: 173675--173717 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
173665 AAGGTCAAAA
173675 AATTATTTTTAAT
1 AATTATTTTTAAT
173688 AATTATTTTTTAA-
1 AATTA-TTTTTAAT
173701 AATTATATTTATAAT
1 AATTAT-TTT-TAAT
173716 AA
1 AA
173718 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 13 0.50
14 10 0.38
15 2 0.08
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTATTTTTAAT
Found at i:173702 original size:28 final size:28
Alignment explanation
Indices: 173671--173748 Score: 74
Period size: 26 Copynumber: 2.9 Consensus size: 28
173661 TTTTAAGGTC
173671 AAAAAATTATTTTTAATAATTATTTTT-
1 AAAAAATTATTTTTAATAATTATTTTTA
* * * *
173698 -TAAAATTATATTT-ATAATAAATTTTA
1 AAAAAATTATTTTTAATAATTATTTTTA
173724 AAAAATATTTATTTTTAAT-ATTATT
1 AAAAA-A-TTATTTTTAATAATTATT
173749 AAATTAAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
25 10 0.26
26 11 0.29
27 3 0.08
28 1 0.03
29 11 0.29
30 2 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
AAAAAATTATTTTTAATAATTATTTTTA
Found at i:173795 original size:28 final size:30
Alignment explanation
Indices: 173724--173795 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 30
173714 ATAAATTTTA
* *
173724 AAAAATATTTATT-TTTAATATTATTAAATT
1 AAAAATATTTTTTATTTAAAATTA-TAAATT
* *
173754 AAAAATAATATTTATTTAAAATTA-AAATT
1 AAAAATATTTTTTATTTAAAATTATAAATT
173783 -AAAATATTTTTTA
1 AAAAATATTTTTTA
173796 ATTATCTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 11 0.31
29 5 0.14
30 10 0.29
31 9 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
AAAAATATTTTTTATTTAAAATTATAAATT
Found at i:173843 original size:14 final size:14
Alignment explanation
Indices: 173825--173901 Score: 51
Period size: 14 Copynumber: 6.0 Consensus size: 14
173815 TTTAAAATTT
173825 ATATTATATTTATA
1 ATATTATATTTATA
* * **
173839 TTATTTTAAATATA
1 ATATTATATTTATA
173853 ATATTATATTT-TA
1 ATATTATATTTATA
173866 ATA--AT-TTT-T-
1 ATATTATATTTATA
173875 ATATTATATTTA-A
1 ATATTATATTTATA
* *
173888 ATAATATAATTATA
1 ATATTATATTTATA
173902 TTATATTCAA
Statistics
Matches: 47, Mismatches: 10, Indels: 12
0.68 0.14 0.17
Matches are distributed among these distances:
9 3 0.06
10 4 0.09
11 4 0.09
12 3 0.06
13 15 0.32
14 18 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATATTATATTTATA
Done.