Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2631
Parameters: 2 7 7 80 10 50 1000
Length:  77731

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2373--2413
19
2.2
19
95
0
73
31
19
9
39
1.84
3544--3587
4
11.0
4
90
0
61
43
0
6
50
1.29
3544--3587
6
7.3
6
89
0
61
43
0
6
50
1.29
3544--3587
10
4.4
10
91
0
61
43
0
6
50
1.29
4403--4436
3
11.3
3
100
0
68
67
0
0
32
0.91
6935--6960
3
8.7
3
100
0
52
34
0
0
65
0.93
10512--10555
19
2.2
20
88
4
63
38
0
0
61
0.96
11210--11241
7
4.6
7
96
0
55
46
0
0
53
1.00
11731--11794
25
2.5
24
85
9
83
39
3
4
53
1.38
11748--11798
25
2.0
25
100
0
102
39
0
3
56
1.18
11958--12009
18
2.9
18
84
15
65
36
1
1
59
1.19
12276--12314
12
3.1
13
85
14
55
38
0
5
56
1.22
12330--12366
18
2.1
18
90
10
58
54
0
2
43
1.14
12625--12652
3
9.3
3
100
0
56
35
0
0
64
0.94
12664--12702
14
2.7
14
88
11
53
43
0
0
56
0.99
12625--12703
12
6.2
12
76
13
61
39
0
1
59
1.06
13560--13588
11
2.5
12
88
11
51
37
0
0
62
0.96
14105--14180
37
2.1
37
89
0
116
42
13
5
39
1.66
14512--14542
2
15.5
2
100
0
62
51
48
0
0
1.00
14908--14978
32
2.2
32
100
0
142
30
19
14
35
1.91
15383--15432
2
25.0
2
100
0
100
50
0
0
50
1.00
15767--15804
2
19.0
2
100
0
76
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16380--16411
13
2.5
13
94
0
55
46
0
12
40
1.42
17697--17729
17
1.9
17
88
11
50
54
0
0
45
0.99
22465--22504
3
13.3
3
100
0
80
67
0
0
32
0.91
23765--23796
3
10.7
3
100
0
64
31
0
0
68
0.90
24037--24083
17
2.8
17
80
6
51
29
12
14
42
1.83
24262--24291
2
15.5
2
93
6
53
50
0
0
50
1.00
24714--24926
107
2.0
107
89
0
327
30
24
25
18
1.98
25247--25279
16
2.0
17
88
5
50
60
6
0
33
1.21
25971--26016
21
2.2
21
88
3
67
65
0
0
34
0.93
30248--30283
2
18.5
2
94
5
65
52
0
0
47
1.00
32489--32542
26
2.0
27
85
3
74
38
0
0
61
0.96
32990--33033
2
22.0
2
95
0
79
50
2
0
47
1.13
33482--33518
2
18.5
2
94
0
65
45
2
0
51
1.15
35320--35374
19
3.1
18
82
7
76
41
0
0
58
0.98
35319--35398
37
2.2
37
81
2
99
41
0
0
58
0.98
37174--37206
13
2.5
13
95
0
57
33
0
3
63
1.10
37214--37270
22
2.7
21
75
5
60
64
1
0
33
1.04
38173--38203
2
15.5
2
93
0
53
51
0
3
45
1.17
38854--38887
2
17.0
2
93
0
59
52
0
0
47
1.00
39504--39572
34
2.0
34
85
2
93
39
15
18
26
1.91
40915--40950
18
2.0
18
88
0
54
16
33
25
25
1.96
47768--47797
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47797--47831
2
17.5
2
100
0
70
51
0
48
0
1.00
49199--49225
2
13.5
2
100
0
54
51
0
0
48
1.00
51285--51343
3
20.0
3
96
3
111
33
0
0
66
0.92
57801--57979
88
2.0
89
94
2
315
31
11
17
39
1.86
58893--58999
46
2.2
46
80
6
115
31
16
17
33
1.93
58845--59000
50
3.2
50
75
5
133
32
16
16
35
1.90
63352--63708
99
3.6
100
90
3
535
29
20
19
31
1.97
63352--63708
50
7.2
50
90
2
560
29
20
19
31
1.97
63352--63708
149
2.4
148
93
1
608
29
20
19
31
1.97
68772--68893
61
2.0
61
100
0
244
31
9
16
42
1.81
69780--69870
45
2.0
45
93
0
155
35
14
25
25
1.93
71457--71527
30
2.4
30
100
0
142
25
28
21
25
1.99
75886--75917
13
2.3
15
89
10
50
43
0
0
56
0.99
75930--75975
25
1.9
25
86
8
69
36
2
2
58
1.22
76747--76775
14
2.0
15
93
6
51
34
0
0
65
0.93
77249--77288
3
14.0
3
89
10
66
0
0
35
65
0.93
77249--77288
17
2.4
17
91
8
64
0
0
35
65
0.93
77249--77288
20
2.0
20
100
0
80
0
0
35
65
0.93

Tables:   1

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