Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold2632

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11946
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31


Found at i:7085 original size:40 final size:40

Alignment explanation


    Indices: 7018--7095  Score: 111
    Period size: 40  Copynumber: 1.9  Consensus size: 40

       7008 AAAACCCAGA

                       *   * *    *                 
       7018 ATGTATCGATAGAATGAGAAATGTATCGATACAATTTCTT
          1 ATGTATCGATACAATAAAAAATATATCGATACAATTTCTT

                         *                        
       7058 ATGTATCGATACATTAAAAAATATATCGATACAATTTC
          1 ATGTATCGATACAATAAAAAATATATCGATACAATTTC

       7096 ATTCTAGAAT


Statistics
Matches: 33,  Mismatches: 5, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  40   33  1.00

ACGTcount: A:0.41, C:0.12, G:0.13, T:0.35


Consensus pattern (40 bp):   
ATGTATCGATACAATAAAAAATATATCGATACAATTTCTT
Done.