genome.fa.s2634.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2634
Parameters: 2 7 7 80 10 50 1000
Length:  29467

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--446	55	7.9	55	83	8	542	27	27	20	23	1.99
1--446	116	3.9	110	85	8	533	27	27	20	23	1.99
3--446	171	2.6	170	92	4	713	27	27	20	23	1.99
1306--1356	13	3.5	13	76	23	57	33	13	15	37	1.87
1285--1356	31	2.3	32	92	2	119	33	12	18	36	1.88
1380--1446	20	3.7	20	72	25	76	23	13	14	47	1.80
1400--1426	13	2.1	13	100	0	54	29	14	14	40	1.86
1380--1479	33	3.0	33	91	1	155	26	15	14	45	1.83
3818--4202	51	7.4	52	71	10	198	30	24	11	32	1.91
3927--3999	27	2.6	28	87	6	96	23	32	20	23	1.98
4036--4201	52	3.2	51	80	5	174	32	24	9	33	1.88
6597--6646	21	2.4	21	83	9	59	48	0	20	32	1.50
6604--6646	21	2.0	22	86	4	61	51	0	20	27	1.48
6756--6781	13	2.0	13	100	0	52	38	15	15	30	1.88
8751--9140	50	7.5	50	71	17	220	31	12	25	30	1.92
8753--8969	52	4.2	50	79	8	193	32	11	25	30	1.91
8955--9030	27	2.8	27	86	6	100	22	21	31	25	1.98
8643--9142	262	1.9	261	85	6	690	31	12	26	29	1.93
11421--11445	12	2.1	12	100	0	50	36	16	16	32	1.90
11400--11467	33	2.1	32	86	10	93	42	13	17	26	1.86
11506--11530	12	2.1	12	100	0	50	36	16	16	32	1.90
12360--13312	55	17.0	54	81	10	898	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12548--12641	47	2.0	47	93	4	163	18	21	28	31	1.96
12595--13338	59	12.9	59	83	8	871	25	20	27	25	1.99
12364--13338	230	4.3	234	83	9	1092	24	20	28	26	1.99
12594--13338	175	4.3	175	83	10	883	25	20	27	25	1.99
14323--14375	1	53.0	1	82	0	61	0	3	5	90	0.54
26929--27000	28	2.6	29	87	10	107	27	15	31	25	1.95
26983--27164	55	3.4	52	79	13	181	31	11	27	29	1.92
26983--27213	51	4.3	52	79	8	223	32	12	26	29	1.92
27223--27344	49	2.3	53	85	10	155	30	11	24	33	1.91

Tables:   1

The End!