genome.fa.s2635.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2635
Parameters: 2 7 7 80 10 50 1000
Length:  98194

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
772--819	24	2.0	24	100	0	96	25	8	8	58	1.55
1566--1590	12	2.1	12	100	0	50	32	32	0	36	1.58
3041--3066	13	2.0	13	100	0	52	38	15	15	30	1.88
3788--3814	13	2.1	13	100	0	54	29	14	14	40	1.86
3799--3854	19	2.9	19	89	2	85	32	19	14	33	1.92
27052--27177	20	5.8	20	72	17	99	30	14	11	43	1.80
28086--28126	22	2.0	22	85	9	59	21	21	9	46	1.80
29457--29507	20	2.5	20	87	0	66	31	15	15	37	1.89
29580--29604	13	1.9	13	100	0	50	32	16	16	36	1.90
38214--38264	20	2.5	20	87	0	66	31	15	15	37	1.89
38337--38361	13	1.9	13	100	0	50	32	16	16	36	1.90
38317--38384	33	2.1	33	88	2	102	35	17	14	32	1.91
49527--49551	13	1.9	13	100	0	50	36	16	8	40	1.77
57777--58378	28	21.1	28	82	6	683	31	30	16	21	1.96
59385--59464	20	4.0	21	82	8	103	33	13	13	38	1.85
62747--62796	21	2.3	21	90	10	75	50	14	6	30	1.66
62928--62952	13	1.9	13	100	0	50	40	16	16	28	1.89
63346--63445	49	2.0	49	94	0	173	20	10	33	37	1.86
70338--70423	20	4.6	19	72	22	76	29	15	17	38	1.90
70377--70434	13	5.0	12	74	21	61	32	15	17	34	1.91
70360--70434	33	2.3	33	100	0	150	30	14	18	36	1.91
70360--70456	33	2.9	32	90	6	124	29	14	18	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73525--73592	33	2.1	32	86	8	93	35	11	17	35	1.87
73633--73685	20	2.6	21	82	8	65	32	16	13	37	1.88
73673--73697	13	1.9	13	100	0	50	36	16	16	32	1.90
74192--74322	66	2.0	66	96	0	244	32	21	6	38	1.80
76191--76216	13	2.0	13	100	0	52	30	15	15	38	1.88
76419--76444	8	3.2	8	100	0	52	61	23	0	15	1.33
77616--77641	13	2.0	13	100	0	52	38	15	15	30	1.88
77598--77661	32	2.0	33	87	3	94	40	17	14	28	1.88
77852--77881	5	6.2	5	92	7	53	60	0	40	0	0.97
78104--78170	37	1.9	35	88	11	102	32	11	25	29	1.92
82838--82863	13	2.0	13	100	0	52	38	15	15	30	1.88
82820--82883	32	2.0	33	87	3	94	40	17	14	28	1.88
83074--83103	5	6.2	5	92	7	53	60	0	40	0	0.97
83326--83392	37	1.9	35	88	11	102	32	11	25	29	1.92
88740--88807	33	2.1	33	86	8	95	32	13	17	36	1.89
88837--88887	21	2.5	21	83	3	68	29	13	15	41	1.86

Tables:   1

The End!