genome.fa.s2637.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2637
Parameters: 2 7 7 80 10 50 1000
Length:  76479

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2571--2595	13	1.9	13	100	0	50	40	20	16	24	1.91
2982--3490	253	2.0	253	96	1	950	32	21	8	37	1.83
4739--4764	13	2.0	13	100	0	52	38	15	15	30	1.88
4716--4784	34	2.1	32	86	10	95	34	15	14	34	1.89
4864--4888	13	1.9	13	100	0	50	36	16	16	32	1.90
7341--7379	13	3.0	13	84	0	51	38	12	15	33	1.85
11777--12280	79	6.4	79	84	3	595	33	14	24	26	1.94
11863--11914	28	1.9	27	84	7	70	28	21	28	21	1.98
11777--12280	237	2.1	237	85	2	683	33	14	24	26	1.94
12213--12449	102	2.3	103	84	5	302	34	10	24	30	1.89
12213--12447	51	4.6	52	81	7	259	34	10	23	31	1.89
14771--14801	13	2.4	13	94	0	53	38	16	12	32	1.86
14749--14823	33	2.3	33	92	0	132	42	12	16	29	1.83
14732--14838	20	5.7	19	72	18	82	41	13	15	29	1.85
14877--14902	13	2.0	13	100	0	52	38	15	15	30	1.88
16808--16832	13	1.9	13	100	0	50	36	16	16	32	1.90
16788--16854	33	2.0	33	88	0	98	32	11	14	40	1.83
16895--16919	13	1.9	13	100	0	50	32	16	16	36	1.90
16894--17021	69	1.9	67	87	9	190	30	17	16	35	1.93
16959--17009	17	2.7	19	85	11	70	33	15	11	39	1.84
21510--21558	13	4.2	13	70	24	54	34	16	16	32	1.91
21510--21578	34	2.1	32	89	10	104	33	15	15	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21658--21682	13	1.9	13	100	0	50	36	16	16	32	1.90
22676--22705	15	2.0	15	100	0	60	6	33	13	46	1.69
23663--23704	13	3.2	13	89	0	66	45	16	11	26	1.82
28307--28411	35	3.0	35	95	0	192	18	12	22	46	1.82
29937--29967	13	2.4	13	94	0	53	35	12	16	35	1.87
29917--29983	33	2.0	33	86	11	93	34	17	11	35	1.87
30053--30079	13	2.1	13	100	0	54	40	14	14	29	1.86
30034--30098	32	2.0	32	90	3	103	40	16	16	26	1.90
31753--31790	20	1.9	20	94	0	67	34	18	15	31	1.92
31725--31791	33	2.0	33	85	5	91	32	17	14	34	1.91
31820--31896	21	3.8	21	91	5	122	33	18	14	33	1.91
31863--31927	32	2.0	32	84	3	85	41	13	15	29	1.86
34378--34419	13	3.2	13	89	0	66	45	16	11	26	1.82
40679--40704	13	2.0	13	100	0	52	38	15	15	30	1.88
40661--40724	33	2.0	32	90	3	101	39	20	14	26	1.90
47961--47999	13	3.0	13	88	0	60	30	17	15	35	1.91
48423--48474	20	2.4	21	84	9	61	21	50	25	3	1.65
50411--50467	20	2.8	20	83	0	69	38	14	15	31	1.87
50539--50563	13	1.9	13	100	0	50	32	16	16	36	1.90
50519--50586	33	2.1	33	88	2	102	35	17	14	32	1.91
51320--51518	35	5.7	35	85	3	215	23	23	11	42	1.85
51320--51518	105	1.9	105	82	4	249	23	23	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51755--51897	43	3.3	43	69	5	119	20	20	9	48	1.76
51973--52125	43	3.6	41	74	7	128	18	18	11	50	1.77
51932--52205	85	3.2	85	80	4	250	19	21	12	45	1.83
53313--53337	13	1.9	13	100	0	50	36	16	16	32	1.90
56981--57369	168	2.3	165	83	4	471	35	10	4	49	1.59
58237--58262	13	2.0	13	100	0	52	30	15	15	38	1.88
68322--68368	21	2.2	21	85	7	60	59	8	0	31	1.27
68869--68902	17	1.9	17	88	5	50	61	0	0	38	0.96
69299--69352	25	2.2	25	83	9	67	48	3	3	44	1.38
69347--69403	18	2.9	21	80	15	59	43	0	1	54	1.10
69361--69403	9	4.6	9	82	5	50	44	0	0	55	0.99
71393--71432	20	2.0	20	85	0	53	57	2	0	40	1.12
71545--71586	22	1.9	22	90	0	66	50	0	0	50	1.00
72432--72464	3	11.0	3	100	0	66	66	0	0	33	0.92
72692--72761	16	4.1	18	70	12	58	42	0	0	57	0.99
72702--72742	21	2.0	21	90	9	66	36	0	0	63	0.95

Tables:   1

The End!