Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2638
Parameters: 2 7 7 80 10 50 1000
Length:  76437

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10950--10988
20
2.0
20
90
9
64
46
5
0
48
1.24
11130--11159
2
15.0
2
100
0
60
50
0
0
50
1.00
11546--11572
11
2.5
11
100
0
54
0
7
0
92
0.38
11935--11961
8
3.4
8
100
0
54
11
0
11
77
0.99
13371--13450
18
4.6
18
78
9
85
33
5
28
32
1.79
13439--13481
21
2.0
22
86
8
63
32
2
30
34
1.71
14336--14406
33
2.2
32
82
2
79
57
2
0
39
1.13
16776--16813
15
2.4
16
86
4
51
60
7
0
31
1.25
16943--16994
3
17.3
3
95
0
95
69
0
0
30
0.89
16945--17017
12
6.1
12
80
10
78
67
1
0
31
1.00
17335--17376
17
2.5
17
76
3
50
66
0
0
33
0.92
17414--17546
68
1.9
69
96
1
250
49
9
3
36
1.54
17558--17613
26
2.3
26
85
11
75
51
1
0
46
1.11
18738--18803
20
3.5
19
80
19
84
40
0
1
57
1.08
18741--18813
25
3.1
24
78
14
64
43
0
2
53
1.15
20287--20348
5
11.4
5
80
16
70
77
1
19
1
0.94
21105--21131
11
2.5
11
100
0
54
92
0
7
0
0.38
21517--21548
2
16.0
2
100
0
64
50
0
0
50
1.00
21690--21728
20
2.1
18
90
9
60
48
0
5
46
1.24
29533--29559
13
2.1
13
100
0
54
37
25
14
22
1.93
42102--42128
13
2.1
13
100
0
54
29
14
14
40
1.86
44334--44376
18
2.4
18
84
0
59
83
11
0
4
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45566--45624
13
4.5
14
77
14
56
38
11
18
30
1.87
45642--46100
28
15.5
29
78
11
364
31
29
14
25
1.95
45787--46058
95
2.9
95
86
1
368
32
29
14
24
1.94
46003--46118
28
4.1
28
79
9
92
33
26
14
25
1.94
47168--47220
17
3.1
17
80
0
52
77
0
18
3
0.92
47600--47635
2
18.0
2
100
0
72
50
0
0
50
1.00
49317--50123
400
2.0
400
99
0
1578
31
21
17
29
1.96
54310--54446
39
3.5
38
71
11
100
27
23
21
28
1.99
54442--54520
39
2.0
39
82
4
97
22
12
25
39
1.89
54492--54566
39
1.9
39
83
0
96
22
21
21
34
1.97
57213--57260
22
2.2
21
82
10
60
56
4
4
35
1.38
57222--57263
22
1.9
22
95
0
75
52
4
2
40
1.35
58146--58206
18
3.4
18
75
8
63
60
0
0
39
0.97
58139--58210
16
4.6
16
73
19
53
59
0
0
40
0.97
58898--58962
20
3.6
20
66
32
56
36
1
3
58
1.23
58896--58967
32
2.2
32
92
0
117
36
1
2
59
1.20
58908--58961
18
3.2
17
71
28
53
37
1
3
57
1.27
59440--59500
29
2.1
29
87
6
88
31
0
27
40
1.57
72808--72947
52
2.7
52
79
6
140
45
10
13
30
1.78
73003--73056
20
2.7
20
88
2
72
33
18
9
38
1.83
73480--73526
20
2.3
21
78
7
53
53
4
0
42
1.20
73617--73701
45
1.9
44
97
2
161
49
7
2
41
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73838--73906
22
3.2
22
78
11
81
65
0
0
34
0.93
73859--73896
15
2.7
15
84
8
53
65
0
0
34
0.93
75277--75304
13
2.2
13
100
0
56
28
14
17
39
1.89

Tables:   1

The End!