Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2639
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39059
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Found at i:1723 original size:13 final size:13
Alignment explanation
Indices: 1705--1730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1695 ACAAAGATCC
1705 ATGTATCGATACA
1 ATGTATCGATACA
1718 ATGTATCGATACA
1 ATGTATCGATACA
1731 TTGAGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1806 original size:19 final size:20
Alignment explanation
Indices: 1782--1835 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
1772 AGCGATACAT
1782 TGTATCGATACAAAACT-TA
1 TGTATCGATACAAAACTATA
** *
1801 TGTATCGATACAGTTACTATT
1 TGTATCGATACA-AAACTATA
1822 TGTATCGATACAAA
1 TGTATCGATACAAA
1836 TTATTGAAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAAAACTATA
Found at i:2593 original size:52 final size:51
Alignment explanation
Indices: 2513--3311 Score: 446
Period size: 49 Copynumber: 16.8 Consensus size: 51
2503 TAAAGAATGT
* * * * * * * *
2513 CAATGTGCTGATTCACGGTCAGCAACATTAGTCTTGAAGATGAGAAGAATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG-GTGC
* * ** * * *
2565 CAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTACAGATGACGAAGATAC
1 CAATATGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGA-GAAGGTGC
* * * *
2618 TAATATGCTGATTCGAGGCCAGCGATATTGGACTTAAAAAT--GAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * * * *
2667 CAATGTGCTGATTCACGGCCAGCGACATTGGACTTAAAGATGTCGATGGCGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG-AGAAGGTGC
* *
2719 CAATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAGAT--G-ATGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * * **
2767 CAATATGCTGATTCCAGGCCAGCGATATTGGGCTTAAAGATG-GTTGGGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAG--AAGGTGC
* * * *
2819 CAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGAT-A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* ***
2868 CAATATGCTGATTCAATGCCAGCG--A-T--AC-T---G--G-GCTTGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * * *
2907 CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* *
2955 CAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----A--TGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * *
2994 CAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGAT-A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* ***
3043 CAATATGTTGATTCAAGGCCAGCG--A-T--AC-T---G--G-GCTTGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * * * * *
3082 CAATGTGTTGATTCAAGGCCTGCAACATTGGTCTT-AA-A-GACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * * * *
3130 CAATATGCTGATTCAAGACCAGCGATATTGGGC-TCAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-GAGAAGGTGC
*
3181 CAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T-A-AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * * * *
3224 CAATGTGCTGATTCAAGGCCAGTGACATCGGTCTCAAAGAT--GAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
* * *
3273 CAATATGCTGATTCAAAGCTAGCGATATTGGACTTAAAG
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
3312 GTGCCACGGA
Statistics
Matches: 580, Mismatches: 111, Indels: 115
0.72 0.14 0.14
Matches are distributed among these distances:
39 82 0.14
40 3 0.01
41 3 0.01
42 2 0.00
43 37 0.06
44 5 0.01
45 3 0.01
46 2 0.00
47 7 0.01
48 105 0.18
49 133 0.23
51 41 0.07
52 116 0.20
53 37 0.06
54 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (51 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGGTGC
Found at i:2687 original size:49 final size:49
Alignment explanation
Indices: 2619--3311 Score: 530
Period size: 49 Copynumber: 14.8 Consensus size: 49
2609 CGAAGATACT
* *
2619 AATATGCTGATTCGAGGCCAGCGATATTGGACTTAAAAATGAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * * * *
2668 AATGTGCTGATTCACGGCCAGCGACATTGGACTTAAAGATGTCGATGGCGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA--T-GAAGGTGCC
* * *
2720 AATATGCTAATTCAAGGCCAGCGACATTGGACTTAAAGATG-ATGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * **
2768 AATATGCTGATTCCAGGCCAGCGATATTGGGCTTAAAGATGGTTGGGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGCC
* * * * * *
2820 AATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * *
2869 AATATGCTGATTCAATGCCAGCGATACTGGGC-T-----T----GTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * * * *
2908 AATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
*
2956 AATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A--TGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * * * *
2995 AATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * *
3044 AATATGTTGATTCAAGGCCAGCGATACTGGGC-T-----T----GTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * * * * * *
3083 AATGTGTTGATTCAAGGCCTGCAACATTGGTCTTAAAGA-CAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * *
3131 AATATGCTGATTCAAGACCAGCGATATTGGGC-TCAAGATGGAAAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGCC
3182 AATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* * * * * *
3225 AATGTGCTGATTCAAGGCCAGTGACATCGGTCTCAAAGATGAAGGTGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
* *
3274 AATATGCTGATTCAAAGCTAGCGATATTGGACTTAAAG
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
3312 GTGCCACGGA
Statistics
Matches: 509, Mismatches: 86, Indels: 98
0.73 0.12 0.14
Matches are distributed among these distances:
39 94 0.18
40 3 0.01
41 1 0.00
43 38 0.07
45 1 0.00
47 8 0.02
48 106 0.21
49 135 0.27
50 1 0.00
51 39 0.08
52 83 0.16
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (49 bp):
AATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCC
Found at i:2753 original size:101 final size:101
Alignment explanation
Indices: 2562--3311 Score: 499
Period size: 88 Copynumber: 7.9 Consensus size: 101
2552 ATGAGAAGAA
* * ** * * * * *
2562 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTACAGATGACGAAGATACTAATATGCT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGTCGAAGGTGCCAATATGCT
* * *
2627 GATTCGAGGCCAGCGATATTGGACTTAAAAATGAAGG
65 GATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * *
2664 TGCCAATGTGCTGATTCACGGCCAGCGACATTGGACTTAAAGATGTCGATGGCGCCAATATGCTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTCGAAGGTGCCAATATGCTG
*
2729 ATTCAAGGCCAGCGACATTGGACTTAAAGATG-ATG
66 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * * *
2764 TGCCAATATGCTGATTCCAGGCCAGCGATATTGGGCTTAAAGATGGTTG-GGGTGCCAATGTGCT
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-GTCGAAGGTGCCAATATGCT
* * * *
2828 GATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGG
65 GATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *** * *
2865 TGCCAATATGCTGATTCAATGCCAGCG--A-T--AC-T---G--G--GCTTGTGCCAATGTGTTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTCGAAGGTGCCAATATGCTG
* *
2917 ATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGG
66 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * *
2952 TGCCAATATGCTGATTCAAGGCCAGCGATATTGG-------GCT-T---A--TGCCAATGTGCTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTCGAAGGTGCCAATATGCTG
* * *
3004 ATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGG
66 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* *** * *
3040 TGCCAATATGTTGATTCAAGGCCAGCG--A-T--AC-T---G--G--GCTTGTGCCAATGTGTTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTCGAAGGTGCCAATATGCTG
* * * *
3092 ATTCAAGGCCTGCAACATTGGTCTTAAAGA-CAAGG
66 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * ***
3127 TGCCAATATGCTGATTCAAGACCAGCGATATTGGGC-TCAAGATGGAAAAGGTGCCAATATGCTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTCGAAGGTGCCAATATGCTG
*
3191 ATTCAAGGCCAGCGATATTGGACTT----A--AAGG
66 ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
* * * * *
3221 TGCCAATGTGCTGATTCAAGGCCAGTGACATCGGTCTCAAAGA--T-GAAGGTGCCAATATGCTG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTCGAAGGTGCCAATATGCTG
* * *
3283 ATTCAAAGCTAGCGATATTGGACTTAAAG
66 ATTCAAGGCCAGCGACATTGGACTTAAAG
3312 GTGCCACGGA
Statistics
Matches: 534, Mismatches: 77, Indels: 80
0.77 0.11 0.12
Matches are distributed among these distances:
85 1 0.00
86 2 0.00
87 101 0.19
88 110 0.21
89 4 0.01
90 2 0.00
92 43 0.08
94 34 0.06
95 7 0.01
96 1 0.00
97 1 0.00
98 1 0.00
99 34 0.06
100 81 0.15
101 82 0.15
102 30 0.06
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.25
Consensus pattern (101 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGTCGAAGGTGCCAATATGCTG
ATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGG
Found at i:2919 original size:39 final size:39
Alignment explanation
Indices: 2864--3245 Score: 170
Period size: 39 Copynumber: 8.7 Consensus size: 39
2854 AAAGATAAAG
* *
2864 GTGCCAATATGCTGATTCAATGCCAGCGATACTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
2903 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
2942 AAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * *
2990 ATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----T
* *
3035 AAAGGTGCCAATATGTTGATTCAAGGCCAGCGATACTGGGCTT
1 ----GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * * *
3078 GTGCCAATGTGTTGATTCAAGGCCTGCAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
3117 AAAGACAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCTCAAGAT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCT-----T
*
3170 GGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
3216 AAAGGTGCCAATGTGCTGATTCAAGGCCAG
1 ----GTGCCAATATGCTGATTCAAGGCCAG
3246 TGACATCGGT
Statistics
Matches: 270, Mismatches: 40, Indels: 62
0.73 0.11 0.17
Matches are distributed among these distances:
39 98 0.36
40 1 0.00
43 30 0.11
45 1 0.00
46 1 0.00
48 67 0.25
49 30 0.11
51 41 0.15
53 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:2995 original size:87 final size:88
Alignment explanation
Indices: 2815--3163 Score: 549
Period size: 88 Copynumber: 4.0 Consensus size: 88
2805 GATGGTTGGG
* *
2815 GTGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
*
2880 TCAATGCCAGCGATACTGGGCTT
66 TCAAGGCCAGCGATACTGGGCTT
* *
2903 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
*
2967 TCAAGGCCAGCGATATTGGGCTT
66 TCAAGGCCAGCGATACTGGGCTT
* * *
2990 ATGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
3055 TCAAGGCCAGCGATACTGGGCTT
66 TCAAGGCCAGCGATACTGGGCTT
* * * *
3078 GTGCCAATGTGTTGATTCAAGGCCTGCAACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
* *
3142 TCAAGACCAGCGATATTGGGCT
66 TCAAGGCCAGCGATACTGGGCT
3164 CAAGATGGAA
Statistics
Matches: 239, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
87 119 0.50
88 120 0.50
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (88 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGAT
TCAAGGCCAGCGATACTGGGCTT
Found at i:3112 original size:175 final size:175
Alignment explanation
Indices: 2816--3163 Score: 624
Period size: 175 Copynumber: 2.0 Consensus size: 175
2806 ATGGTTGGGG
2816 TGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
* *
2881 CAATGCCAGCGATACTGGGCTTGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAG
66 CAAGGCCAGCGATACTGGGCTTGTGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAAAG
*
2946 ACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
131 ACAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCTTA
* * * *
2991 TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGTTGATT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
*
3056 CAAGGCCAGCGATACTGGGCTTGTGCCAATGTGTTGATTCAAGGCCTGCAACATTGGTCTTAAAG
66 CAAGGCCAGCGATACTGGGCTTGTGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAAAG
3121 ACAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCT
131 ACAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCT
3164 CAAGATGGAA
Statistics
Matches: 165, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
175 165 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (175 bp):
TGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATACTGGGCTTGTGCCAATGTGTTGATTCAAGGCCAGCAACATTGGTCTTAAAG
ACAAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCTTA
Found at i:3187 original size:51 final size:49
Alignment explanation
Indices: 3123--3306 Score: 195
Period size: 51 Copynumber: 3.8 Consensus size: 49
3113 TCTTAAAGAC
*
3123 AAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCTCAAGATGGAA
1 AAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGACTCAAGAT-G-A
*
3174 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT-----T-A
1 AAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGACTCAAGATGA
* * * * * *
3217 AAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATCGGTCTCAAAGATG-
1 AAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGACTC-AAGATGA
*
3266 AAGGTGCCAATATGCTGATTCAA-AGCTAGCGATATTGGACT
1 AAGGTGCCAATATGCTGATTCAAGA-CCAGCGATATTGGACT
3307 TAAAGGTGCC
Statistics
Matches: 111, Mismatches: 14, Indels: 18
0.78 0.10 0.13
Matches are distributed among these distances:
43 37 0.33
46 1 0.01
49 34 0.31
51 39 0.35
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGACTCAAGATGA
Found at i:3234 original size:43 final size:43
Alignment explanation
Indices: 3173--3317 Score: 164
Period size: 43 Copynumber: 3.2 Consensus size: 43
3163 TCAAGATGGA
3173 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
3216 AAAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATCGGTCTCAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT------T
* * *
3265 GAAGGTGCCAATATGCTGATTCAAAGCTAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
3308 AAAGGTGCCA
1 AAAGGTGCCA
3318 CGGAGTTGTG
Statistics
Matches: 82, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
43 47 0.57
49 35 0.43
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:3297 original size:92 final size:93
Alignment explanation
Indices: 3123--3317 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 93
3113 TCTTAAAGAC
* *
3123 AAGGTGCCAATATGCTGATTCAAGACCAGCGATATTGGGCTCAAGATGGAAAAGGTGCCAATATG
1 AAGGTGCCAATATGCTGATTCAAGACCAGCGACATCGGGCTCAAGATGG-AAAGGTGCCAATATG
*
3188 CTGATTCAAGGCCAGCGATATTGGACTTA
65 CTGATTCAAAGCCAGCGATATTGGACTTA
* * * *
3217 AAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATCGGTCTCAAAGAT-G-AAGGTGCCAATATG
1 AAGGTGCCAATATGCTGATTCAAGACCAGCGACATCGGGCTC-AAGATGGAAAGGTGCCAATATG
*
3280 CTGATTCAAAGCTAGCGATATTGGACTTA
65 CTGATTCAAAGCCAGCGATATTGGACTTA
3309 AAGGTGCCA
1 AAGGTGCCA
3318 CGGAGTTGTG
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
92 50 0.54
94 37 0.40
95 5 0.05
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (93 bp):
AAGGTGCCAATATGCTGATTCAAGACCAGCGACATCGGGCTCAAGATGGAAAGGTGCCAATATGC
TGATTCAAAGCCAGCGATATTGGACTTA
Found at i:3386 original size:30 final size:29
Alignment explanation
Indices: 3340--3839 Score: 358
Period size: 30 Copynumber: 16.2 Consensus size: 29
3330 CTTAAAAGGA
*
3340 AAAAG-TGCCACGGAGTCGTGGACTTTTGG
1 AAAAGATGCCACTGAGTCGTGGAC-TTTGG
** * *
3369 AAAAGATGTTACTGAGTCATGGATTTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGA-CTTTG--G
3401 AAAAAAGATGCCACT-AGGTCGTGGACTTTGAAG
1 --AAAAGATGCCACTGA-GTCGTGGACTTTG--G
* * *
3434 AAAAGATGCCACTGAGTTGTGGACTTAGA
1 AAAAGATGCCACTGAGTCGTGGACTTTGG
*
3463 AAAGAGATGCCACTGAGTCATGGACTTTGGG
1 AAA-AGATGCCACTGAGTCGTGGACTTT-GG
* *
3494 AAAGAGATGCCACTGAGTTGTGGACTTGGG
1 AAA-AGATGCCACTGAGTCGTGGACTTTGG
* *
3524 AAAGAGATGCCACTGAGTTGTGGACTTGGAAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTG--G
* * * *
3556 AAAAGGTTGCCACTAAGTCGTGGACTTAGA
1 AAAA-GATGCCACTGAGTCGTGGACTTTGG
3586 AAAGAGATGCCACTGAGTCGTGGACTTTGAAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTG--G
* *
3618 AAAAGATGCCACTGTGTCATGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG--G
* * * *
3649 AAAAGATGCCACTGAGTCGTAGACATAGA
1 AAAAGATGCCACTGAGTCGTGGACTTTGG
* *
3678 AAAGAGATGCCACTAAGTCGTGGACTTAAAAGG
1 AAA-AGATGCCACTGAGTCGTGGACTT---TGG
* *
3711 AAAAAGATGCCACTGAGTTGTGGACTTGGAAG
1 -AAAAGATGCCACTGAGTCGTGGACTTTG--G
* * * *
3743 AAAAGGATGCAACTAAGTCGTGGACTTAGA
1 AAAA-GATGCCACTGAGTCGTGGACTTTGG
* * * *
3773 AAAGAGATGCCACTGATTTGTGAACCTTGGG
1 AAA-AGATGCCACTGAGTCGTGGA-CTTTGG
3804 AAAAAAGATGCCACTGAGTCGTGGAC-TTGG
1 --AAAAGATGCCACTGAGTCGTGGACTTTGG
*
3834 AGAAGA
1 AAAAGA
3840 GAGATTTGAA
Statistics
Matches: 383, Mismatches: 60, Indels: 57
0.77 0.12 0.11
Matches are distributed among these distances:
28 5 0.01
29 11 0.03
30 134 0.35
31 111 0.29
32 67 0.17
33 34 0.09
34 21 0.05
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (29 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGG
Found at i:3487 original size:61 final size:61
Alignment explanation
Indices: 3399--3841 Score: 484
Period size: 62 Copynumber: 7.2 Consensus size: 61
3389 GGATTTTTGA
* * *
3399 AGAAAAAAGATGCCACT-AGGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTTGTGGACTT
1 AGAAAAGAGATGCCACTGA-GTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTT
* *
3460 AGAAAAGAGATGCCACTGAGTCATGGACTTTGG--GAAAGAGATGCCACTGAGTTGTGGACTT
1 AGAAAAGAGATGCCACTGAGTCGTGGAC-TTGGAAGAAA-AGATGCCACTGAGTCGTGGACTT
* * * * *
3521 GGGAAAGAGATGCCACTGAGTTGTGGACTTGGAAGAAAAGGTTGCCACTAAGTCGTGGACTT
1 AGAAAAGAGATGCCACTGAGTCGTGGACTTGGAAGAAAA-GATGCCACTGAGTCGTGGACTT
* * *
3583 AGAAAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGTGTCATGGACTT
1 AGAAAAGAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTT
* * * * * * *
3644 TGAAGAAAAGATGCCACTGAGTCGTAGACATAGAA-AAGAGATGCCACTAAGTCGTGGACTT
1 AGAA-AAGAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTT
* * *
3705 AAAAGGAAAA-AGATGCCACTGAGTTGTGGACTTGGAAGAAAAGGATGCAACTAAGTCGTGGACT
1 ---A-GAAAAGAGATGCCACTGAGTCGTGGACTTGGAAGAAAA-GATGCCACTGAGTCGTGGACT
3769 T
61 T
* * *
3770 AGAAAAGAGATGCCACTGATTTGTGAACCTTGGGAA-AAAAGATGCCACTGAGTCGTGGACTT
1 AGAAAAGAGATGCCACTGAGTCGTGGA-CTT-GGAAGAAAAGATGCCACTGAGTCGTGGACTT
* *
3832 GGAGAAGAGA
1 AGAAAAGAGA
3842 GATTTGAAGA
Statistics
Matches: 326, Mismatches: 40, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
60 8 0.02
61 120 0.37
62 135 0.41
63 30 0.09
64 9 0.03
65 24 0.07
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (61 bp):
AGAAAAGAGATGCCACTGAGTCGTGGACTTGGAAGAAAAGATGCCACTGAGTCGTGGACTT
Found at i:5749 original size:163 final size:168
Alignment explanation
Indices: 5563--5872 Score: 436
Period size: 165 Copynumber: 1.9 Consensus size: 168
5553 TCTTCTCTGC
* * *
5563 AAATTTTTTTGGCAAGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATT-GT-TTTA
1 AAATTTTTTTGGCAAGAATTTTTCTTGGTTTTTAATCTTAAAAATTCATAAAATATTAGTATTTA
*
5626 ATTCATATTAAATCAGTTTTCAAAAATTAATTCATGTTCATAAATTTTTG-A-TTTTT-CTTGAA
66 ATTCATACTAAATCAGTTTTCAAAAATTAATTCATGTTCATAAATTTTTGAATTTTTTCCTTGAA
*
5688 ATT-CTTTTATTTTAAAAAAACGGAGTCTTCTACTTTGT
131 ATTCCTTTT-TTCTAAAAAAACGGAGTCTTCTACTTTGT
* * * *
5726 AAATTTTTTTCGG-GAGAATTTTTCTTGGTTTTTAATCTTAAAAATTTATCAAATATTATTATTT
1 AAATTTTTTT-GGCAAGAATTTTTCTTGGTTTTTAATCTTAAAAATTCATAAAATATTAGTATTT
* * * *
5790 AATTCATACTAATTTAGTTTTCAAAAATTCATTCATTTTCATAAATTTTTGAATTTTTTCCTTGA
65 AATTCATACTAAATCAGTTTTCAAAAATTAATTCATGTTCATAAATTTTTGAATTTTTTCCTTGA
5855 AATTCCTTTTTTCTAAAA
130 AATTCCTTTTTTCTAAAA
5873 TATGAAATTT
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
163 48 0.38
164 3 0.02
165 49 0.39
166 1 0.01
167 5 0.04
168 16 0.13
169 5 0.04
ACGTcount: A:0.32, C:0.09, G:0.08, T:0.51
Consensus pattern (168 bp):
AAATTTTTTTGGCAAGAATTTTTCTTGGTTTTTAATCTTAAAAATTCATAAAATATTAGTATTTA
ATTCATACTAAATCAGTTTTCAAAAATTAATTCATGTTCATAAATTTTTGAATTTTTTCCTTGAA
ATTCCTTTTTTCTAAAAAAACGGAGTCTTCTACTTTGT
Found at i:6224 original size:155 final size:154
Alignment explanation
Indices: 5908--6446 Score: 403
Period size: 155 Copynumber: 3.5 Consensus size: 154
5898 TTCCTTTATG
* * ** * * * **
5908 TTTTTAAATCCCTTAGGGGTATCAAGTATTTTTATGTCAAGGGTATCCCCT-AAGGATATTCTT-
1 TTTTTAAGTCCCTTAAGGGTATCGGGTACTTTTACGTCAAAGGTAT-CCCTAAAGGGCATT-TTC
* * ** * * * * * * *
5971 ATAA-TTTTCTAGAACTAACTCCTAGGTTATCGCTGGGTCCGCTTTTATGTCAAAGGTAGATAAT
64 ATAATTTTTC-AAAACCAACTCCTAGGTTATAACCGAGTCCACTTTTATGCCGAAGGTGGGT-AT
* *
6035 T-ACGATAGGTTCATCCCTTTTAAAAT-A
127 TCA-GATAGGTTCATCCCTTTTATAGTCA
* * *
6062 CTCTTTAAATCCCTTAAGAGTATCGGGTACTTTTACGTCAAAGGTATCTCCTAAAGGGCATTTTC
1 -TTTTTAAGTCCCTTAAGGGTATCGGGTACTTTTACGTCAAAGGTATC-CCTAAAGGGCATTTTC
* * ***
6127 GTAATTTTT-AAAACCAACTCCTAGGTTATCACCGAGTTTGCTTTTATGCCGAAGGTGGGTATCT
64 ATAATTTTTCAAAACCAACTCCTAGGTTATAACCGAGTCCACTTTTATGCCGAAGGTGGGTAT-T
*
6191 CAGATAGGTTCACCCCTTTTATAGTCA
128 CAGATAGGTTCATCCCTTTTATAGTCA
* * * * * * * * * *
6218 TTTTTAAGTCCTTTAGGGGT-TCCAGGATACTATCACATCAAAAGTATCCCTTAGGGGTATTTTC
1 TTTTTAAGTCCCTTAAGGGTAT-C-GGGTACTTTTACGTCAAAGGTATCCCTAAAGGGCATTTTC
** * ** * *
6282 ATAATTTTTCAAAACTGAGTCCTAGGTTATAATTGGGTCCACTTTTATGCCGAAGGTGGGTATTT
64 ATAATTTTTCAAAACCAACTCCTAGGTTATAACCGAGTCCACTTTTATGCCGAAGGTGGGTATTC
*
6347 AGAATAGGTTCATCCCTTTTATAGTCT
129 AG-ATAGGTTCATCCCTTTTATAGTCA
* * * * *
6374 TTTTTAAGT-CCTTTAGGGCTATCGGGTACTTCTACGTCGAAGGTATCCCT-TAGAGGTATTTTC
1 TTTTTAAGTCCCTTAAGGG-TATCGGGTACTTTTACGTCAAAGGTATCCCTAAAG-GGCATTTTC
*
6437 ATAAGTTTTC
64 ATAATTTTTC
6447 TTGAACTTAG
Statistics
Matches: 305, Mismatches: 65, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
154 5 0.02
155 188 0.62
156 107 0.35
157 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (154 bp):
TTTTTAAGTCCCTTAAGGGTATCGGGTACTTTTACGTCAAAGGTATCCCTAAAGGGCATTTTCAT
AATTTTTCAAAACCAACTCCTAGGTTATAACCGAGTCCACTTTTATGCCGAAGGTGGGTATTCAG
ATAGGTTCATCCCTTTTATAGTCA
Found at i:6337 original size:156 final size:155
Alignment explanation
Indices: 6167--6446 Score: 413
Period size: 156 Copynumber: 1.8 Consensus size: 155
6157 ACCGAGTTTG
6167 CTTTTATGCCGAAGGTGGGTATCTCAG-ATAGGTTCACCCCTTTTATAGTCATTTTTAAGTCCTT
1 CTTTTATGCCGAAGGTGGGTAT-TCAGAATAGGTTCACCCCTTTTATAGTCATTTTTAAGTCCTT
* * *
6231 TAGGGGT-TCCAGGATACTATC-ACATCAAAAGTATCCCTTAGGGGTATTTTCATAATTTTTCAA
65 TAGGGCTAT-C-GGATACT-TCTACATCAAAAGTATCCCTTAGAGGTATTTTCATAAGTTTTCAA
6294 AACTGAGTCCTAGGTTATAATTGGGTCCA
127 AACTGAGTCCTAGGTTATAATTGGGTCCA
* * *
6323 CTTTTATGCCGAAGGTGGGTATTTAGAATAGGTTCATCCCTTTTATAGTCTTTTTTAAGTCCTTT
1 CTTTTATGCCGAAGGTGGGTATTCAGAATAGGTTCACCCCTTTTATAGTCATTTTTAAGTCCTTT
* * * *
6388 AGGGCTATCGGGTACTTCTACGTCGAAGGTATCCCTTAGAGGTATTTTCATAAGTTTTC
66 AGGGCTATCGGATACTTCTACATCAAAAGTATCCCTTAGAGGTATTTTCATAAGTTTTC
6447 TTGAACTTAG
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
154 2 0.02
155 44 0.40
156 64 0.58
157 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.39
Consensus pattern (155 bp):
CTTTTATGCCGAAGGTGGGTATTCAGAATAGGTTCACCCCTTTTATAGTCATTTTTAAGTCCTTT
AGGGCTATCGGATACTTCTACATCAAAAGTATCCCTTAGAGGTATTTTCATAAGTTTTCAAAACT
GAGTCCTAGGTTATAATTGGGTCCA
Found at i:7712 original size:43 final size:43
Alignment explanation
Indices: 7661--7813 Score: 191
Period size: 43 Copynumber: 3.6 Consensus size: 43
7651 AGTCTCTCGA
* *
7661 GTCAAAGCCGATAGGCAGACTTAAGGACGAAGAAGTCTCTAAG
1 GTCAAAGCCGACAGGCAGACTTAAGGACGAAGAAATCTCTAAG
* *
7704 GTCAAAGCCGACAGGTAGACTTAAAGACGAAGAAATCTCTAAG
1 GTCAAAGCCGACAGGCAGACTTAAGGACGAAGAAATCTCTAAG
* ** *
7747 GTCACAA-CCGACAGGCAAACTTAAGGGTGAAGAAATCTCTAGG
1 GTCA-AAGCCGACAGGCAGACTTAAGGACGAAGAAATCTCTAAG
* * *
7790 GCCAAAGCTGACAGGCGGACTTAA
1 GTCAAAGCCGACAGGCAGACTTAA
7814 AGGTAAAGAA
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 2 0.02
43 90 0.96
44 2 0.02
ACGTcount: A:0.38, C:0.20, G:0.26, T:0.16
Consensus pattern (43 bp):
GTCAAAGCCGACAGGCAGACTTAAGGACGAAGAAATCTCTAAG
Found at i:7839 original size:43 final size:43
Alignment explanation
Indices: 7756--7844 Score: 97
Period size: 43 Copynumber: 2.1 Consensus size: 43
7746 GGTCACAACC
* * *
7756 GACAGGCAAACTTAAGGGTGAAGAAATCTCTAGGGCCAAAGCT
1 GACAGGCAAACTTAAAGGTAAAGAAATCTCTAGCGCCAAAGCT
** * * * *
7799 GACAGGCGGACTTAAAGGTAAAGAAGTCTCTTGCGTCAAAGTT
1 GACAGGCAAACTTAAAGGTAAAGAAATCTCTAGCGCCAAAGCT
7842 GAC
1 GAC
7845 GAGCAGACAA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (43 bp):
GACAGGCAAACTTAAAGGTAAAGAAATCTCTAGCGCCAAAGCT
Found at i:8071 original size:44 final size:44
Alignment explanation
Indices: 7934--8072 Score: 133
Period size: 44 Copynumber: 3.2 Consensus size: 44
7924 AATGCAAATC
* *
7934 GTTTGACAAGGGTGGTAACCATACATCAAACAGGAAGGAAGCG-GA
1 GTTTGACTAGGGTGGTAACCATACATCAAACAGGAAAG-AG-GAGA
* * *
7979 -TTTTACTAGGGTGGTAAGCATACATCAAATC--GAAATGAGAAGA
1 GTTTGACTAGGGTGGTAACCATACATCAAA-CAGGAAA-GAGGAGA
* ***
8022 ATTTGACTAGGGTGGTAACCATGTGTCAAACAGGAAAGAGGAGA
1 GTTTGACTAGGGTGGTAACCATACATCAAACAGGAAAGAGGAGA
8066 GTTTGAC
1 GTTTGAC
8073 AAGGCCCTAA
Statistics
Matches: 76, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
43 8 0.11
44 63 0.83
45 5 0.07
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.22
Consensus pattern (44 bp):
GTTTGACTAGGGTGGTAACCATACATCAAACAGGAAAGAGGAGA
Found at i:10680 original size:79 final size:79
Alignment explanation
Indices: 10482--10681 Score: 233
Period size: 79 Copynumber: 2.5 Consensus size: 79
10472 ATAACGAGGC
* * * * *
10482 TGGAGTATCCCCGATTATGAAAAATCGGTGTTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCTC
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTA
*
10547 GAAAATAACAGGGT
66 AAAAATAACAGGGT
** ** * *
10561 TGGAGTATCCTTGATTAT-AGAAAATCGACATTTTGCAAATAAAATCGAGGTTGGAGTCTCCCCT
1 TGGAGTATCCCCGATTATGA-AAAATCGATGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCCT
10625 AAAAAATAAC-GGGAT
65 AAAAAATAACAGGG-T
* * *
10640 TGGAGTATCCCCGATTGTGAAAAATCGATGCTTTAAAAATAA
1 TGGAGTATCCCCGATTATGAAAAATCGATGTTTTGAAAATAA
10682 GGCCGGGGTT
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
78 4 0.04
79 94 0.95
80 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (79 bp):
TGGAGTATCCCCGATTATGAAAAATCGATGTTTTGAAAATAAAATCGAGGTTGGAGTATCCCCTA
AAAAATAACAGGGT
Found at i:10691 original size:130 final size:130
Alignment explanation
Indices: 10557--10880 Score: 314
Period size: 130 Copynumber: 2.5 Consensus size: 130
10547 GAAAATAACA
* * * *
10557 GGGTTGGAGTATCCTTGATTAT-AGAAAATCGACAT-TTTG-CAAATAAAATCGAGGTTGGAGTC
1 GGGTTGGAGTATCCTCGATTATGAG-AAATC-A-ATATTTGACAAATAAAACCAAGGTTGGAGTA
* * * **
10619 TCCCCTAAAAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAATCGATGCTTTAAAAATAAGG
63 TCCCCTAAAAAATAACGGGATTAGAGTATCCCCGATTATGAAAAATCAATGCTTTAAAAATAAAA
10684 CCG
128 CCG
* * * * *
10687 GGGTTAGAGTATCCTCGATTGTGAGAAATCAATATTTGAGAAATAAAGCCAAGGTTGGAGTATTC
1 GGGTTGGAGTATCCTCGATTATGAGAAATCAATATTTGACAAATAAAACCAAGGTTGGAGTATCC
* * * * * ** *
10752 CCTCAGAAATAACGGGATTAGAGTATCCTCGATTATGAAAAATTAATGTTTTGGAAATAAAACTG
66 CCTAAAAAATAACGGGATTAGAGTATCCCCGATTATGAAAAATCAATGCTTTAAAAATAAAACCG
* * * * * ** **
10817 GGGTTGGAGTATCCCCGA-GATGAAAAATCAATATTTTAGAAATAAAGTCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCTCGATTATGAGAAATCAATATTTGACAAATAAAACCAAGGTTGGAGTATCC
10881 TCGAGATGAA
Statistics
Matches: 159, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
128 2 0.01
129 43 0.27
130 112 0.70
131 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (130 bp):
GGGTTGGAGTATCCTCGATTATGAGAAATCAATATTTGACAAATAAAACCAAGGTTGGAGTATCC
CCTAAAAAATAACGGGATTAGAGTATCCCCGATTATGAAAAATCAATGCTTTAAAAATAAAACCG
Found at i:10748 original size:51 final size:51
Alignment explanation
Indices: 10639--10749 Score: 125
Period size: 51 Copynumber: 2.2 Consensus size: 51
10629 AATAACGGGA
* * * **
10639 TTGGAGTATCCCCGATTGTGAAAAATCGATGCTTTAAAAATAAGGCCGGGG
1 TTGGAGTATCCCCGATTGTGAAAAATCAATGATTTAAAAATAAAGCCAAGG
* * * *
10690 TTAGAGTATCCTCGATTGTGAGAAATCAAT-ATTTGAGAAATAAAGCCAAGG
1 TTGGAGTATCCCCGATTGTGAAAAATCAATGATTT-AAAAATAAAGCCAAGG
10741 TTGGAGTAT
1 TTGGAGTAT
10750 TCCCTCAGAA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
50 3 0.06
51 46 0.94
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (51 bp):
TTGGAGTATCCCCGATTGTGAAAAATCAATGATTTAAAAATAAAGCCAAGG
Found at i:10843 original size:50 final size:50
Alignment explanation
Indices: 10772--10895 Score: 169
Period size: 50 Copynumber: 2.5 Consensus size: 50
10762 AACGGGATTA
* * * *
10772 GAGTATCCTCGATTATGAAAAATTAATGTTTTGGAAATAAAACT-GGGGTTG
1 GAGTATCCTCGA-GATGAAAAATCAATATTTTAGAAAT-AAACTCGGGGTTG
* *
10823 GAGTATCCCCGAGATGAAAAATCAATATTTTAGAAATAAAGTCGGGGTTG
1 GAGTATCCTCGAGATGAAAAATCAATATTTTAGAAATAAACTCGGGGTTG
10873 GAGTATCCTCGAGATGAAAAATC
1 GAGTATCCTCGAGATGAAAAATC
10896 TAGAAATTTA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
49 4 0.06
50 50 0.77
51 11 0.17
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.28
Consensus pattern (50 bp):
GAGTATCCTCGAGATGAAAAATCAATATTTTAGAAATAAACTCGGGGTTG
Found at i:12669 original size:21 final size:21
Alignment explanation
Indices: 12645--12684 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
12635 ATTATGCTTG
12645 GCCAATAGG-ATTAGGGGATAA
1 GCCAA-AGGCATTAGGGGATAA
*
12666 GCCAAAGGCATTATGGGAT
1 GCCAAAGGCATTAGGGGAT
12685 TTTCCCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.20
Consensus pattern (21 bp):
GCCAAAGGCATTAGGGGATAA
Found at i:13090 original size:20 final size:20
Alignment explanation
Indices: 13065--13115 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
13055 GTATCAATAC
13065 AATGTATCGATACAATGAAT
1 AATGTATCGATACAATGAAT
13085 AATGTATCGATACAATGAAT
1 AATGTATCGATACAATGAAT
*
13105 AATATATCGAT
1 AATGTATCGAT
13116 GCAAATTATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACAATGAAT
Found at i:13829 original size:61 final size:60
Alignment explanation
Indices: 13764--14106 Score: 425
Period size: 61 Copynumber: 5.6 Consensus size: 60
13754 GGACTAGCAG
* * ** * * * *
13764 GTGCCACCAACTTGTATAGGCTTTGCAAGGAGAAAGCATCATGTTTTTTGAGGACTGGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCATCCTGCTCTTTGAGGACTGGAAA
* * * * * *
13825 GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCTTGCACTTTGACGACTAGAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCATCCTGCTCTTTGAGGACT-GGAAA
*
13887 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGCATCCTGCTCTTTGAGGACTGGAAA
* * **
13948 GTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTGCTCTTTGAGGACTAAAAAA
1 GTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGCATCCTGCTCTTTGAGGACT-GGAAA
* *
14010 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCCGCTCTTTGAGGACTAGAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA-GCATCCTGCTCTTTGAGGACTGGAAA
14071 GTGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAG
1 GTGCCACCAACTTGTGTGGGC-TTTAAAAGGAAAAG
14107 ATGTTCTACT
Statistics
Matches: 246, Mismatches: 29, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
60 3 0.01
61 126 0.51
62 114 0.46
63 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (60 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGCATCCTGCTCTTTGAGGACTGGAAA
Found at i:13905 original size:62 final size:62
Alignment explanation
Indices: 13764--14106 Score: 435
Period size: 62 Copynumber: 5.6 Consensus size: 62
13754 GGACTAGCAG
* * ** * * * * *
13764 GTGCCACCAACTTGTATAGGCTTTGCAAGGAGAAA-GCATCATGTTTTTTGAGGACT-GGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAGAAAA
* * * * *
13825 GTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCTTGCACTTTGACGACTAGAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAA
* *
13887 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA-GCATCCTGCTCTTTGAGGACT-GGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAGAAAA
* * * *
13948 GTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTGCTCTTTGAGGACTAAAAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAA
*
14010 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCCGCTCTTTGAGGACTAG-AAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAA
14071 GTGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAG
1 GTGCCACCAACTTGTGTGGGC-TTTAAAAGGAAAAG
14107 ATGTTCTACT
Statistics
Matches: 246, Mismatches: 30, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
60 6 0.02
61 118 0.48
62 119 0.48
63 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (62 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAAA
Found at i:13990 original size:123 final size:123
Alignment explanation
Indices: 13764--14106 Score: 499
Period size: 123 Copynumber: 2.8 Consensus size: 123
13754 GGACTAGCAG
* * ** * * *
13764 GTGCCACCAACTTGTATAGGCTTTGCAAGGAGAAAGCATCATGTTTTTTGAGGACTGGAAGGTGC
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTGC
* * * * *
13829 CACCAACTTATGTGGGCTTTAAAAGGAAAAGGCGTCTTGCACTTTGACGACTAGAAAA
66 CACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTGCACTTTGACGACTAAAAAA
13887 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTGC
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTGC
* *
13952 CACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTGCTCTTTGAGGACTAAAAAA
66 CACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTGCACTTTGACGACTAAAAAA
* * *
14010 GTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCCGCTCTTTGAGGACTAGAAAGTG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAGGTG
* *
14074 CCACCAACTTGTGTGGGCTTTTAAAAGGAAAAG
65 CCACCAACTTGTGTGGGCTTTAAAAAGAAAAAG
14107 ATGTTCTACT
Statistics
Matches: 200, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
122 3 0.01
123 197 0.99
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (123 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGTGC
CACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTGCACTTTGACGACTAAAAAA
Found at i:14248 original size:285 final size:285
Alignment explanation
Indices: 13885--14513 Score: 879
Period size: 285 Copynumber: 2.2 Consensus size: 285
13875 ACGACTAGAA
13885 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGT
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGT
* * *
13950 GCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCTTGCTCTTTGAGGACTAAAAAAGTGCC
66 ACCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCCTACTCTTTGAGGACTAAAAAAGTGCC
* * *
14015 ACCAACTTGTGTGGGC-TTTAAAAGGAAAAGGCATCCCGCTCTTTGAGGACTAGAAAGTGCCACC
131 ACCAACTTGTGTAGGCTTTTAAAAAGAAAAGGCATCCCGCTCTTTGAAGACTAGAAAGTGCCACC
*
14079 AACTTGTGTGGGCTTTTAAAAGG-AAAAGATGT-TCTACTCTTT-AAGGACTAAAGGGTGAAAGA
196 AACTTGTGTGGGCTTTTAAAAGGAAAAAG-CGTCT-TACTCTTTGAA-GACT-AAGGGTGAAAGA
* * * *
14141 AGAGAGCGTCTTGCTTTTTGAGGACTGGG
257 AGAGAACGTCCTACTCTTTGAGGACTGGG
* * **
14170 AAGTGCCACCAACTTATGTGTGCTTTGCAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGT
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGT
* * * * ** *
14235 ATCACGAACTTGTGTGGGCTTTAAAAGGAAAAGGTGTCCTACTCTTTGAGGACTAGAAAAGTGCC
66 ACCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCCTACTCTTTGAGGACTAAAAAAGTGCC
* * * * *
14300 ACCAGCTTGTGTAGGCTTTTAAAAAGAAAAGGCGTCCTGCTCTTTGAAGACTAGAAGGTGCCAGC
131 ACCAACTTGTGTAGGCTTTTAAAAAGAAAAGGCATCCCGCTCTTTGAAGACTAGAAAGTGCCACC
* * *
14365 AACTTGTGTGGGCTTTTAAAAGGAAAAAGCGTCTTGCTCTTTGAAGACTAATGGTGAAAGGAGAG
196 AACTTGTGTGGGCTTTTAAAAGGAAAAAGCGTCTTACTCTTTGAAGACTAAGGGTGAAAGAAGAG
14430 AACGTCCTACTCTTTGAGGACTGGG
261 AACGTCCTACTCTTTGAGGACTGGG
* * ** *
14455 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGTGTCCTACTCTTTGAGGACTG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTG
14514 AAAAATGAAA
Statistics
Matches: 301, Mismatches: 39, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
285 215 0.71
286 78 0.26
287 8 0.03
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (285 bp):
AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGGT
ACCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCATCCTACTCTTTGAGGACTAAAAAAGTGCC
ACCAACTTGTGTAGGCTTTTAAAAAGAAAAGGCATCCCGCTCTTTGAAGACTAGAAAGTGCCACC
AACTTGTGTGGGCTTTTAAAAGGAAAAAGCGTCTTACTCTTTGAAGACTAAGGGTGAAAGAAGAG
AACGTCCTACTCTTTGAGGACTGGG
Found at i:14330 original size:63 final size:62
Alignment explanation
Indices: 14146--14414 Score: 265
Period size: 62 Copynumber: 4.4 Consensus size: 62
14136 AAAGAAGAGA
* * * * * * * **
14146 GCGTCTTGCTTTTTGAGGACTGGGAAGTGCCACCAACTTATGTGTGC-TTTGCAAGGAGAAA-
1 GCGTCCTGCTCTTTGAAGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGGA-AAAG
* * * * ** *
14207 GCATCCTGCTCTTTGAGGACTGGAAGGTATCACGAACTTGTGTGGGC-TTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAAGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAG
* * * * * *
14268 GTGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAGCTTGTGTAGGCTTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAAGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAG
* * *
14331 GCGTCCTGCTCTTTGAAGACTAGAAGGTGCCAGCAACTTGTGTGGGCTTTTAAAAGGAAAAA
1 GCGTCCTGCTCTTTGAAGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAG
*
14393 GCGTCTTGCTCTTTGAAGACTA
1 GCGTCCTGCTCTTTGAAGACTA
14415 ATGGTGAAAG
Statistics
Matches: 172, Mismatches: 33, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
60 3 0.02
61 64 0.37
62 72 0.42
63 33 0.19
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (62 bp):
GCGTCCTGCTCTTTGAAGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGGAAAAG
Found at i:14523 original size:100 final size:100
Alignment explanation
Indices: 14332--14524 Score: 228
Period size: 100 Copynumber: 1.9 Consensus size: 100
14322 AAAGAAAAGG
* * *
14332 CGTCCTGCTCTTTGAAGACTAGAAGGTGCCAGCAACTTGTGTGGGCTTTTAAAAGGAAAAAGCGT
1 CGTCCTACTCTTTGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAAGCGT
* * ***
14397 CTTGCTCTTTGAAGACTAATGGTGAAAGGAGAGAA
66 CCTACTCTTTGAAGACTAAAAATGAAAGGAGAGAA
* * * * *
14432 CGTCCTACTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGC-TTTAAAAAGAGAAGGTG
1 CGTCCTACTCTTTGAAGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAAGCG
*
14495 TCCTACTCTTTGAGGACTGAAAAATGAAAG
65 TCCTACTCTTTGAAGACT-AAAAATGAAAG
14525 AAAAAAGTTT
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
99 28 0.36
100 46 0.60
101 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (100 bp):
CGTCCTACTCTTTGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAAGAAAAAGCGT
CCTACTCTTTGAAGACTAAAAATGAAAGGAGAGAA
Found at i:22652 original size:46 final size:46
Alignment explanation
Indices: 22585--22677 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
22575 TCAATAGTTT
22585 TTCATTTTCCTCATACTTGGACATCTTACAACAGTACATCCTAAGG
1 TTCATTTTCCTCATACTTGGACATCTTACAACAGTACATCCTAAGG
*
22631 TTCATTTTCCTCATACTTGGACATCTTACGACAGTACATCCTAAGG
1 TTCATTTTCCTCATACTTGGACATCTTACAACAGTACATCCTAAGG
22677 T
1 T
22678 GTGTAGTGGG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.35
Consensus pattern (46 bp):
TTCATTTTCCTCATACTTGGACATCTTACAACAGTACATCCTAAGG
Found at i:27926 original size:79 final size:79
Alignment explanation
Indices: 27787--28164 Score: 349
Period size: 79 Copynumber: 4.8 Consensus size: 79
27777 ACAAGGGGGC
** * * * * * * *
27787 TAGAGTATCCCCGATTATAGAAAATA-GGTGTTCTGGAAATATAGTCGGGGTTGAAATATCCTCT
1 TAGAGTATCCCCGATTATAGAAAA-ACAATATTTTAGAAATAAAGTCGGGGTTGGAGTATCCCCT
*
27851 CGAAAATAATAGGGT
65 CGAAAATAACAGGGT
* * * * *
27866 TAGAGTATCCCTGAATATAGAAAAACAACATTTT-GAAAATAAAATCGGGTTTGGAGTATCCCCT
1 TAGAGTATCCCCGATTATAGAAAAACAATATTTTAG-AAATAAAGTCGGGGTTGGAGTATCCCCT
*
27930 CGAAAATAACGGGGT
65 CGAAAATAACAGGGT
* * * * * * *
27945 TGGAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAGGTCGGGGTTGGAGTATCCCCAC
1 TAGAGTATCCCCGATTATAGAAAAACAATATTTTAGAAATAAAGTCGGGGTTGGAGTATCCCCTC
* *
28010 CAAAATAACAGAGT
66 GAAAATAACAGGGT
* *
28024 TCA-AGTATCCCCGATTATA-AAAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATTCCC
1 T-AGAGTATCCCCGATTATAGAAAAA-CAATATTTTAGAAATAAAGTCGGGGTTGGAGTATCCCC
28087 TC-AGAAATAAC-GGGAT
64 TCGA-AAATAACAGGG-T
** * *
28103 T-GAAGTATCCCCGATTAT-GAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCC
1 TAG-AGTATCCCCGATTATAGAAAAA-CAATATTTTAGAAATAAAGTCGGGGTTGGAGTATCCC
28165 GAGATGAAAA
Statistics
Matches: 243, Mismatches: 46, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
78 9 0.04
79 233 0.96
80 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (79 bp):
TAGAGTATCCCCGATTATAGAAAAACAATATTTTAGAAATAAAGTCGGGGTTGGAGTATCCCCTC
GAAAATAACAGGGT
Found at i:28078 original size:158 final size:157
Alignment explanation
Indices: 27789--28164 Score: 445
Period size: 158 Copynumber: 2.4 Consensus size: 157
27779 AAGGGGGCTA
* * * * * * * * *
27789 GAGTATCCCCGATTATAGAAAATAGGTGTTCTGGAAATATAGTCGGGGTTGAAATATCCTCTCGA
1 GAGTATCCCCGATTATGGAAAATAGATGTTTTAGAAATA-AGTCGGGGTTGGAGTATCCCCACCA
* * * * *
27854 AAATAATAGGGTTAGAGTATCCCTGAATATAGAAAAACAACATTTTGAAAATAAAATCGGGTTTG
65 AAATAACAGAGTTAGAGTATCCCCGAATATAGAAAAACAACATTTTGAAAATAAAACCGGGGTTG
*
27919 GAGTATCCCCTC-GAAAATAACGGGGTTG
130 GAGTATCCCCTCAG-AAATAACGGGATTG
*
27947 GAGTATCCCCGATTATGGAAAATCGATGTTTTAGAAATAAGGTCGGGGTTGGAGTATCCCCACCA
1 GAGTATCCCCGATTATGGAAAATAGATGTTTTAGAAATAA-GTCGGGGTTGGAGTATCCCCACCA
* * *
28012 AAATAACAGAGTTCA-AGTATCCCCGATTATA-AAAAATCAATATTTT-AGAAATAAAGCCGGGG
65 AAATAACAGAGTT-AGAGTATCCCCGAATATAGAAAAA-CAACATTTTGA-AAATAAAACCGGGG
*
28074 TTGGAGTATTCCCTCAGAAATAACGGGATTG
127 TTGGAGTATCCCCTCAGAAATAACGGGATTG
* * * *
28105 AAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCC
1 GAGTATCCCCGATTATGGAAAATAGATGTTTTAGAAAT-AAGTCGGGGTTGGAGTATCCC
28165 GAGATGAAAA
Statistics
Matches: 188, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
157 7 0.04
158 177 0.94
159 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (157 bp):
GAGTATCCCCGATTATGGAAAATAGATGTTTTAGAAATAAGTCGGGGTTGGAGTATCCCCACCAA
AATAACAGAGTTAGAGTATCCCCGAATATAGAAAAACAACATTTTGAAAATAAAACCGGGGTTGG
AGTATCCCCTCAGAAATAACGGGATTG
Found at i:28175 original size:49 final size:50
Alignment explanation
Indices: 28119--28227 Score: 184
Period size: 49 Copynumber: 2.2 Consensus size: 50
28109 ATCCCCGATT
**
28119 ATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCC-GAG
1 ATGAAAAATCAATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCTGAG
*
28168 ATGAAAAATCAATGTTTTAGAAATAAAGTCGGGGTTGGAGTATCCCTGAG
1 ATGAAAAATCAATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCTGAG
28218 ATGAAAAATC
1 ATGAAAAATC
28228 TAGAAATTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
49 43 0.77
50 13 0.23
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.28
Consensus pattern (50 bp):
ATGAAAAATCAATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCTGAG
Found at i:30553 original size:20 final size:20
Alignment explanation
Indices: 30527--30577 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
30517 TAAACCTAGC
*
30527 ATGTATCGATATAATGAACA
1 ATGTATCGATATAAAGAACA
* *
30547 GTGTATCGATATAAAGAATA
1 ATGTATCGATATAAAGAACA
30567 ATGTATCGATA
1 ATGTATCGATA
30578 CAAATTGTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (20 bp):
ATGTATCGATATAAAGAACA
Found at i:33937 original size:32 final size:32
Alignment explanation
Indices: 33896--33960 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
33886 TGGACAGTAT
33896 CAAAATCCAATCGTGGGCTGATTTGGCCAAAG
1 CAAAATCCAATCGTGGGCTGATTTGGCCAAAG
*
33928 CAAAATCCAATCGTGGGTTGATTTGGCCAAAG
1 CAAAATCCAATCGTGGGCTGATTTGGCCAAAG
33960 C
1 C
33961 CTTCCTCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (32 bp):
CAAAATCCAATCGTGGGCTGATTTGGCCAAAG
Found at i:35648 original size:12 final size:12
Alignment explanation
Indices: 35616--35657 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
35606 AGTTCCTTTC
*
35616 AAAAAAAGAAAA
1 AAAAAAAGCAAA
35628 AAATGAAAAGCAAA
1 AAA--AAAAGCAAA
35642 AAAAAAAGCAAA
1 AAAAAAAGCAAA
35654 AAAA
1 AAAA
35658 TTGCAAAGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 16 0.59
14 11 0.41
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (12 bp):
AAAAAAAGCAAA
Found at i:35656 original size:28 final size:27
Alignment explanation
Indices: 35616--35671 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 27
35606 AGTTCCTTTC
35616 AAAAAAAGAAAAAAATGAAAAG-CAAA
1 AAAAAAAGAAAAAAATGAAAAGTCAAA
*
35642 AAAAAAAGCAAAAAAATTGCAAAGTCAAA
1 AAAAAAAG-AAAAAAA-TGAAAAGTCAAA
35671 A
1 A
35672 TCAAAAGGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.31
27 7 0.27
28 6 0.23
29 5 0.19
ACGTcount: A:0.75, C:0.07, G:0.11, T:0.07
Consensus pattern (27 bp):
AAAAAAAGAAAAAAATGAAAAGTCAAA
Found at i:37914 original size:761 final size:762
Alignment explanation
Indices: 35778--38066 Score: 4483
Period size: 763 Copynumber: 3.0 Consensus size: 762
35768 ATACCCTTTC
*
35778 TTTCTGGACCATGAACCTTGGCGTACATTACGGTCCTTGAAAAGTCTATCTTGATCAAACATGGC
1 TTTCTGAACCATGAACCTTGGCGTACATTACGGTCCTTGAAAAGTCTATCTTGATCAAACATGGC
35843 CATATGAACTGTGAACTTATTCATTAGGGAATTGTTCTTTTAAAAAAAAACACAAAAACCTCGAT
66 CATATGAACTGTGAACTTATTCATTAGGGAATTGTTCTTTTAAAAAAAAACACAAAAACCTCGAT
*
35908 GAGACACAAGCTTCGAGACTCACCCAATCATGGTCACC-AAAAAAAACACAAAAAAAGCTAAAAA
131 GAGACACAAGCTTCGAGACTCACCCAATCTTGGTCACCAAAAAAAAACACAAAAAAAGCTAAAAA
35972 AAAAAAGAAAAATCCTTTCACCCCAAAGTAAGTCAAAAGCCTCTTAAACACCTAAACAATGGGCA
196 AAAAAAGAAAAATCCTTTCACCCCAAAGTAAGTCAAAAGCCTCTTAAACACCTAAACAATGGGCA
36037 ACTACAAAATAACAAGGGCAAATCTTAGGGGCCTTCAAAGGTTGACCCACACCAATCTTATTGAT
261 ACTACAAAATAACAAGGGCAAATCTTAGGGGCCTTCAAAGGTTGACCCACACCAATCTTATTGAT
36102 TATTTGGGAAAGATCTCAAGATGCATCTGGACTGATGAAATGATTGTCAAGGGCAACAATAGCCC
326 TATTTGGGAAAGATCTCAAGATGCATCTGGACTGATGAAATGATTGTCAAGGGCAACAATAGCCC
36167 AAATTGCATCACCCTTCTAGCCATTAAACCATTTTGTTGGAAATAAACCATCACCTTTCTTGTCA
391 AAATTGCATCACCCTTCTAGCCATTAAACCATTTTGTTGGAAATAAACCATCACCTTTCTTGTCA
36232 AAAAAAACTATATCACGTTTCTTGTCAAGCAAGTCTGTTGTCAAAAATGAACCAAATTGTGCTTT
456 AAAAAAACTATATCACGTTTCTTGTCAAGCAAGTCTGTTGTCAAAAATGAACCAAATTGTGCTTT
36297 CCTTTTCTCTTTTTACCTCATACAATGTATTTGCATATGTTATTTAGCTGATAATATTTGATAAT
521 CCTTTTCTCTTTTTACCTCATACAATGTATTTGCATATGTTATTTAGCTGATAATATTTGATAAT
* *
36362 CGAGTAAAATTTGCATCAAGATATCTTAATATTATATCAAAAGTCAAGAAAAGTATAGAGAATTC
586 CGAGTAAAATTTGCATCAAGATATCTTGATATTATATCAAAAGGCAAGAAAAGTATAGAGAATTC
*
36427 TATTCACGCCTCGATTGGTAAAAGACATGAACCTTTCACACTTAAATACCCTCTGACAATGAGCC
651 TATTCACGCCTCGATTGGTAAAAGTCATGAACCTTTCACACTTAAATACCCTCTGACAATGAGCC
36492 AAACCATTCTCCACTGACCATCCACCGTGAAAAGCCATTCGGTGTTG
716 AAACCATTCTCCACTGACCATCCACCGTGAAAAGCCATTCGGTGTTG
36539 TTTCTGAACCATGAACCTTGGCGTACATTACGGTCCTTGAAAAGTCTATCTTGATCAAACATGGC
1 TTTCTGAACCATGAACCTTGGCGTACATTACGGTCCTTGAAAAGTCTATCTTGATCAAACATGGC
36604 CATATGAACTGTGAACTTATTCATTAGGGAATTGTTCTTTTAAAAAAAAAACACAAAAACCTCGA
66 CATATGAACTGTGAACTTATTCATTAGGGAATTGTTCTTTT-AAAAAAAAACACAAAAACCTCGA
*
36669 TGAGACACAAGCTTCGAGACTCACCCAATCTTGGTCACCAAAAATAAACACAAAAAAAGCTAAAA
130 TGAGACACAAGCTTCGAGACTCACCCAATCTTGGTCACCAAAAAAAAACACAAAAAAAGCTAAAA
36734 AAAAAAAGAAAAATCCTTTCACCCCAAAGTAAGTCAAAAGCCTCTTAAACACCTAAACAATGGGC
195 AAAAAAAGAAAAATCCTTTCACCCCAAAGTAAGTCAAAAGCCTCTTAAACACCTAAACAATGGGC
36799 AACTACAAAATAACAAGGGCAAATCTTAGGGGCCTTCAAAGGTTGACCCACACCAATCTTATTGA
260 AACTACAAAATAACAAGGGCAAATCTTAGGGGCCTTCAAAGGTTGACCCACACCAATCTTATTGA
36864 TTATTTGGGAAAGATCTCAAGATGCATCTGGACTGATGAAATGATTGTCAAGGGCAACAATAGCC
325 TTATTTGGGAAAGATCTCAAGATGCATCTGGACTGATGAAATGATTGTCAAGGGCAACAATAGCC
36929 CAAATTGCATCACCCTTCTAGCCATTAAACCATTTTGTTGGAAATAAACCATCACCTTTCTTGTC
390 CAAATTGCATCACCCTTCTAGCCATTAAACCATTTTGTTGGAAATAAACCATCACCTTTCTTGTC
36994 AAAAAAAACTATATCACGTTTCTTGTCAAGCAAGTCTGTTGTCAAAAATGAACCAAATTGTGCTT
455 AAAAAAAACTATATCACGTTTCTTGTCAAGCAAGTCTGTTGTCAAAAATGAACCAAATTGTGCTT
37059 TCCTTTTCTCTTTTTACCTCATACAATGTATTTGCATATGTTATTTAGCTGATAATATTTGATAA
520 TCCTTTTCTCTTTTTACCTCATACAATGTATTTGCATATGTTATTTAGCTGATAATATTTGATAA
37124 TCGAGTAAAATTTGCATCAAGATATCTTGATATTATATCAAAAGGCAAGAAAAGTATAGAGAATT
585 TCGAGTAAAATTTGCATCAAGATATCTTGATATTATATCAAAAGGCAAGAAAAGTATAGAGAATT
37189 CTATTCACGCCTCGATTGGTAAAAGTCATGAACCTTTCACACTTAAATACCCTCTGACAATGAGC
650 CTATTCACGCCTCGATTGGTAAAAGTCATGAACCTTTCACACTTAAATACCCTCTGACAATGAGC
37254 CAAACCATTCTCCACTGACCATCCACCGTGAAAAGCCATTCGGTGTTG
715 CAAACCATTCTCCACTGACCATCCACCGTGAAAAGCCATTCGGTGTTG
37302 TTTCTGAACCATGAACCTTGGCGTACATTACGGTCCTTGAAAAGTCTATCTTGATCAAACATGGC
1 TTTCTGAACCATGAACCTTGGCGTACATTACGGTCCTTGAAAAGTCTATCTTGATCAAACATGGC
37367 CATATGAACTGTGAACTTATTCATTAGGGAATTGTTCTTTTAAAAAAAAACACAAAAACCTCGAT
66 CATATGAACTGTGAACTTATTCATTAGGGAATTGTTCTTTTAAAAAAAAACACAAAAACCTCGAT
37432 GAGACACAAGCTTCGAGACTCACCCAATCTTGGTCACCAAAAAAAAACACAAAAAAAGCT-AAAA
131 GAGACACAAGCTTCGAGACTCACCCAATCTTGGTCACCAAAAAAAAACACAAAAAAAGCTAAAAA
37496 AAAAAAGAAAAATCCTTTCACCCCAAAGTAAGTCAAAAGCCTCTTAAACACCTAAACAATGGGCA
196 AAAAAAGAAAAATCCTTTCACCCCAAAGTAAGTCAAAAGCCTCTTAAACACCTAAACAATGGGCA
*
37561 ACTACAAAATAACAAGGGCAAATCTTAGGGGTCTTCAAAGGTTGACCCACACCAATCTTATTGAT
261 ACTACAAAATAACAAGGGCAAATCTTAGGGGCCTTCAAAGGTTGACCCACACCAATCTTATTGAT
37626 TATTTGGGAAAGATCTCAAGATGCATCTGGACTGATGAAATGATTGTCAAGGGCAACAATAGCCC
326 TATTTGGGAAAGATCTCAAGATGCATCTGGACTGATGAAATGATTGTCAAGGGCAACAATAGCCC
37691 AAATTGCATCACCCTTCTAGCCATTAAACCATTTTGTTGGAAATAAACCATCACCTTTCTTGTCA
391 AAATTGCATCACCCTTCTAGCCATTAAACCATTTTGTTGGAAATAAACCATCACCTTTCTTGTCA
37756 AAAAAAACTATATCACGTTTCTTGTCAAGCAAGTCTGTTGTCAAAAATGAACCAAATTGTGCTTT
456 AAAAAAACTATATCACGTTTCTTGTCAAGCAAGTCTGTTGTCAAAAATGAACCAAATTGTGCTTT
37821 CCTTTTCTCTTTTTACCTCATACAATGTATTTGCATATGTTATTTAGCTGATAATATTTGATAAT
521 CCTTTTCTCTTTTTACCTCATACAATGTATTTGCATATGTTATTTAGCTGATAATATTTGATAAT
37886 CGAGTAAAATTTGCATCAAGATATCTTGATATTATATCAAAAGGCAAGAAAAGTATAGAGAATTC
586 CGAGTAAAATTTGCATCAAGATATCTTGATATTATATCAAAAGGCAAGAAAAGTATAGAGAATTC
37951 TATTCACGCCTCGATTGGTAAAAGTCATGAACCTTTCACACTTAAATACCCTCTGACAATGAGCC
651 TATTCACGCCTCGATTGGTAAAAGTCATGAACCTTTCACACTTAAATACCCTCTGACAATGAGCC
*
38016 AAACCATTCTCCACTGACCATCCACCGTGAAAAGCCATTCGATGTTG
716 AAACCATTCTCCACTGACCATCCACCGTGAAAAGCCATTCGGTGTTG
38063 TTTC
1 TTTC
38067 ATAAAAAAAG
Statistics
Matches: 1517, Mismatches: 9, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
761 678 0.45
762 144 0.09
763 695 0.46
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.28
Consensus pattern (762 bp):
TTTCTGAACCATGAACCTTGGCGTACATTACGGTCCTTGAAAAGTCTATCTTGATCAAACATGGC
CATATGAACTGTGAACTTATTCATTAGGGAATTGTTCTTTTAAAAAAAAACACAAAAACCTCGAT
GAGACACAAGCTTCGAGACTCACCCAATCTTGGTCACCAAAAAAAAACACAAAAAAAGCTAAAAA
AAAAAAGAAAAATCCTTTCACCCCAAAGTAAGTCAAAAGCCTCTTAAACACCTAAACAATGGGCA
ACTACAAAATAACAAGGGCAAATCTTAGGGGCCTTCAAAGGTTGACCCACACCAATCTTATTGAT
TATTTGGGAAAGATCTCAAGATGCATCTGGACTGATGAAATGATTGTCAAGGGCAACAATAGCCC
AAATTGCATCACCCTTCTAGCCATTAAACCATTTTGTTGGAAATAAACCATCACCTTTCTTGTCA
AAAAAAACTATATCACGTTTCTTGTCAAGCAAGTCTGTTGTCAAAAATGAACCAAATTGTGCTTT
CCTTTTCTCTTTTTACCTCATACAATGTATTTGCATATGTTATTTAGCTGATAATATTTGATAAT
CGAGTAAAATTTGCATCAAGATATCTTGATATTATATCAAAAGGCAAGAAAAGTATAGAGAATTC
TATTCACGCCTCGATTGGTAAAAGTCATGAACCTTTCACACTTAAATACCCTCTGACAATGAGCC
AAACCATTCTCCACTGACCATCCACCGTGAAAAGCCATTCGGTGTTG
Found at i:38616 original size:32 final size:32
Alignment explanation
Indices: 38543--39039 Score: 413
Period size: 32 Copynumber: 15.9 Consensus size: 32
38533 TTTCCTATCA
** * *
38543 AAAGCCCACACAAGTTAGTGGCAACCGCTCCTC
1 AAAGCCCACACAAGTCGGTGGC-ACCCCTTCTC
*
38576 AAAGCCCACACAAGTTGGTGGCACCCCTTCTC
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* *
38608 AAAACCCACACAAGTCGGTGGCAACCCTTCTC
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* * *
38640 TAAAACCCACACAAGTTGGTGGCACCCCCTC-C
1 -AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* * * *
38672 AAAGCCCATACAAGTCGATTGCA-ACCTTCTC
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
*
38703 TAAAGCCCACACAAGTTGGTGGCACCCC-TCT-
1 -AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* * *
38734 AAAGCCCAC-CAAGTCAGTGGCAACCCATCTC
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* *
38765 AAAGCCTAAACAAGT-GGTGGCACCCCCTT-T-
1 AAAGCCCACACAAGTCGGTGGCA-CCCCTTCTC
** * * *
38795 AAAGTTCACA-AAGTCGGTAGCAACCATTCTC
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
38826 AAAGCCCACAC-AGT-GGTGGCACCCC--CTC
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* * * *
38854 AAAAG-CCACACAAGTCAGTGG--CCCATTTTT
1 -AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* *
38884 AAAGCCCACCACAAGTTGGTGGCACCCTCTT-TT
1 AAAGCCCA-CACAAGTCGGTGGCACCC-CTTCTC
* ** *
38917 AAAGCCCACAAAAGTTAGTGGCAACCC-TCT-
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* *
38947 AAAGCCCACACAAGTCGATGGCAACCC-TCTC
1 AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
*
38978 TAAAGCCCACACAAGTCGGTGGCAACCCTTCTC
1 -AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
* *
39011 AAAGCCCACATAAGTCGATGGCATCCCCT
1 AAAGCCCACACAAGTCGGTGGCA-CCCCT
39040 CTTCTAAAAC
Statistics
Matches: 378, Mismatches: 59, Indels: 54
0.77 0.12 0.11
Matches are distributed among these distances:
28 12 0.03
29 33 0.09
30 72 0.19
31 57 0.15
32 131 0.35
33 71 0.19
34 2 0.01
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCACCCCTTCTC
Found at i:38778 original size:61 final size:62
Alignment explanation
Indices: 38543--39041 Score: 470
Period size: 61 Copynumber: 8.0 Consensus size: 62
38533 TTTCCTATCA
*
38543 AAAGCCCACACAAGTTAGTGGCAACCGC-TCCTCAAAGCCCACACAAGTTGGTGGCACCCCTTCT
1 AAAGCCCACACAAGTCAGTGGCAACC-CAT-CTCAAAGCCCACACAAGTTGGTGGCACCCC-TCT
* * * * *
38607 CAAAACCCACACAAGTCGGTGGCAACCCTTCTCTAAAACCCACACAAGTTGGTGGCACCCCCTCC
1 -AAAGCCCACACAAGTCAGTGGCAACCCATCTC-AAAGCCCACACAAGTTGGTGGCA-CCCCTCT
* * *
38672 AAAGCCCATACAAGTC-GATTGCAA-CCTTCTCTAAAGCCCACACAAGTTGGTGGCACCCCTCT
1 AAAGCCCACACAAGTCAG-TGGCAACCCATCTC-AAAGCCCACACAAGTTGGTGGCACCCCTCT
* * *
38734 AAAGCCCAC-CAAGTCAGTGGCAACCCATCTCAAAGCCTAAACAAG-TGGTGGCACCCCCTTT
1 AAAGCCCACACAAGTCAGTGGCAACCCATCTCAAAGCCCACACAAGTTGGTGGCA-CCCCTCT
** * * *
38795 AAAGTTCACA-AAGTCGGTAGCAA-CCATTCTCAAAGCCCACAC-AG-TGGTGGCACCCCCTCA
1 AAAGCCCACACAAGTCAGTGGCAACCCA-TCTCAAAGCCCACACAAGTTGGTGGCA-CCCCTCT
* * *
38855 AAAG-CCACACAAGTCAGTGG---CCCATTTTTAAAGCCCACCACAAGTTGGTGGCACCCTCTTT
1 AAAGCCCACACAAGTCAGTGGCAACCCA-TCTCAAAGCCCA-CACAAGTTGGTGGCACCC-C-TC
38916 T
62 T
* * * *
38917 AAAGCCCACAAAAGTTAGTGGCAACCC-TCT-AAAGCCCACACAAGTCGATGGCAACCCTCTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCATCTCAAAGCCCACACAAGTTGGTGGC-ACCC-CTCT
* * * * *
38979 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACATAAGTCGATGGCATCCCCTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCATCTCAAAGCCCACACAAGTTGGTGGCA-CCCCTCT
39042 TCTAAAACTC
Statistics
Matches: 369, Mismatches: 41, Indels: 50
0.80 0.09 0.11
Matches are distributed among these distances:
58 14 0.04
59 7 0.02
60 44 0.12
61 69 0.19
62 64 0.17
63 67 0.18
64 49 0.13
65 48 0.13
66 7 0.02
ACGTcount: A:0.30, C:0.35, G:0.17, T:0.18
Consensus pattern (62 bp):
AAAGCCCACACAAGTCAGTGGCAACCCATCTCAAAGCCCACACAAGTTGGTGGCACCCCTCT
Done.