genome.fa.s2640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2640
Parameters: 2 7 7 80 10 50 1000
Length:  56948

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8497--8841	105	3.3	104	70	12	272	31	11	26	29	1.92
8502--8672	51	3.3	51	79	4	198	32	11	26	29	1.92
8655--8730	27	2.8	28	88	6	102	21	21	34	23	1.97
11192--11216	13	1.9	13	100	0	50	32	16	16	36	1.90
11172--11238	33	2.0	33	88	0	98	38	16	14	29	1.89
11256--11323	19	3.9	18	76	23	83	38	14	11	35	1.83
11278--11302	13	1.9	13	100	0	50	32	16	16	36	1.90
11259--11321	32	2.0	32	96	0	117	36	15	12	34	1.86
11359--11434	21	3.7	20	91	3	107	35	15	13	35	1.87
11615--11689	20	3.8	20	80	3	89	29	14	13	42	1.84
18567--18883	115	2.8	113	79	6	316	41	3	7	47	1.51
18758--18950	101	1.9	102	86	1	280	39	4	10	45	1.59
18761--18981	101	2.2	101	82	5	259	38	5	10	45	1.61
18966--19016	25	2.1	25	82	10	61	29	7	9	52	1.62
25814--25844	16	2.0	15	93	6	53	19	3	0	77	0.90
26984--27293	107	2.9	107	79	4	268	11	17	32	39	1.85
27239--27298	22	2.5	25	80	20	74	10	18	31	40	1.84
28495--29087	43	14.0	43	82	3	562	38	17	29	14	1.90
36424--36551	52	2.5	52	94	3	224	30	17	17	33	1.94
36560--36584	13	1.9	13	100	0	50	36	16	16	32	1.90
36625--36691	33	2.0	33	88	0	98	40	13	11	34	1.81
36647--36671	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41559--41900	31	11.0	31	78	9	286	25	29	13	31	1.94
41567--41888	62	5.2	62	82	5	355	26	29	13	31	1.94
41579--41888	125	2.5	126	84	4	432	25	29	13	31	1.94
41885--42025	27	4.9	27	70	16	120	19	31	13	34	1.91
41902--42835	34	28.9	33	74	13	727	19	31	12	36	1.89
42067--42120	27	2.0	27	81	0	63	25	29	11	33	1.91
41902--42831	288	3.2	282	80	9	1009	19	31	13	36	1.90
42256--42313	27	2.1	27	93	0	98	22	29	15	32	1.95
42125--42830	227	3.1	223	75	13	674	19	31	13	36	1.90
42645--42769	27	4.2	27	77	20	115	17	30	14	37	1.90
42832--43616	49	16.8	48	73	14	448	26	25	18	29	1.98
42939--43273	39	7.9	39	70	18	215	26	27	19	26	1.99
42891--43321	87	4.9	87	90	0	655	26	26	19	27	1.99
43239--43616	101	3.8	98	79	4	334	25	24	17	32	1.97
43234--43573	150	2.3	147	80	5	360	25	24	17	32	1.97
49509--49632	52	2.4	51	93	4	205	29	17	18	34	1.94
49509--49652	52	2.8	50	84	13	177	30	17	18	33	1.94
49641--49665	13	1.9	13	100	0	50	36	16	16	32	1.90
49705--49774	33	2.1	33	89	0	104	40	14	11	34	1.82
49730--49754	13	1.9	13	100	0	50	32	16	16	36	1.90
50510--50534	12	2.1	12	100	0	50	84	0	0	16	0.63
50539--50595	21	2.7	21	97	0	105	33	10	19	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50651--50718	19	3.9	19	78	21	85	35	11	14	38	1.83
50672--50696	13	1.9	13	100	0	50	36	16	16	32	1.90
50653--50715	32	2.0	32	96	0	117	34	12	15	36	1.86
50758--50783	13	2.0	13	100	0	52	30	15	15	38	1.88
50738--50804	33	2.0	33	88	0	98	25	14	16	43	1.86
53243--53318	27	2.8	28	89	2	109	23	34	21	21	1.97
53301--53468	52	3.2	52	78	9	166	29	25	13	32	1.93
53454--53523	28	2.6	27	81	4	77	22	31	20	25	1.98
53132--53534	211	1.9	212	88	3	616	27	27	13	31	1.94

Tables:   1

The End!