Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2647
Parameters: 2 7 7 80 10 50 1000
Length:  28602

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
412--436
7
3.6
7
100
0
50
56
0
0
44
0.99
380--420
22
1.9
21
90
5
64
70
0
0
29
0.87
1236--1300
5
13.2
5
72
15
55
35
3
0
61
1.12
1185--1300
24
5.0
24
73
15
84
42
1
2
53
1.25
1224--1268
14
3.1
14
87
3
54
37
0
0
62
0.96
1224--1276
20
2.7
19
88
5
70
37
0
0
62
0.96
1236--1302
11
6.2
11
75
17
61
35
2
0
61
1.12
1682--1721
20
2.0
20
85
9
55
50
0
0
50
1.00
1779--1839
11
5.3
11
72
18
52
39
1
0
59
1.08
1804--1849
24
1.9
24
86
8
67
50
0
0
50
1.00
2175--2213
20
1.9
21
85
15
55
33
12
10
43
1.77
2925--2962
3
12.7
3
100
0
76
68
0
0
31
0.90
3202--3246
18
2.6
19
76
16
53
48
0
2
48
1.13
3220--3278
21
2.8
23
71
23
58
49
0
0
50
1.00
4652--4739
29
3.1
29
80
8
83
56
0
0
43
0.99
4683--4732
23
2.1
24
82
10
59
62
0
0
38
0.96
4895--4919
2
12.5
2
100
0
50
48
0
0
52
1.00
5218--5246
2
14.5
2
100
0
58
48
0
0
51
1.00
8561--8607
23
2.2
22
88
11
71
46
0
0
53
1.00
8561--8599
18
2.1
19
90
9
62
48
0
0
51
1.00
8582--8656
27
3.0
26
73
11
75
48
0
0
52
1.00
15767--15821
27
1.9
29
82
10
69
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20860--20919
28
2.1
29
81
9
70
40
1
0
58
1.08
24934--24970
18
2.1
18
90
5
58
45
0
0
54
1.00
25512--25546
17
2.1
16
89
5
52
77
0
0
22
0.78
25522--25560
12
3.3
12
82
7
53
76
2
0
20
0.90
26829--26902
37
2.0
35
82
12
87
58
0
2
39
1.13
28165--28227
12
5.5
11
76
14
65
38
0
0
61
0.96
28165--28228
11
5.6
12
78
12
64
39
0
0
60
0.97
28164--28228
23
2.8
24
79
9
73
40
0
0
60
0.97
28251--28307
16
3.6
16
80
17
66
47
0
0
52
1.00
28251--28309
25
2.6
21
82
15
64
49
0
0
50
1.00

Tables:   1

The End!