genome.fa.s2650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2650
Parameters: 2 7 7 80 10 50 1000
Length:  36847

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--152	42	2.0	43	93	2	145	28	20	25	25	1.99
174--352	28	6.4	29	75	14	155	21	16	29	32	1.95
198--352	83	1.9	84	85	9	219	20	16	29	33	1.94
7534--7640	20	5.7	19	75	18	91	28	14	14	42	1.86
7571--7601	13	2.4	13	88	0	53	29	12	16	41	1.85
7534--7636	53	1.9	52	83	11	129	28	14	15	41	1.86
9939--10133	51	3.8	51	79	6	171	30	23	9	36	1.87
10091--10261	79	2.2	78	86	9	251	25	27	15	30	1.96
16444--17084	61	10.4	61	83	7	713	24	26	19	29	1.98
16444--17084	123	5.2	122	83	5	754	24	26	19	29	1.98
17068--17574	43	11.5	44	79	12	442	20	29	13	36	1.91
17109--17603	178	2.8	178	92	1	789	19	28	12	39	1.88
18562--18588	13	2.1	13	100	0	54	29	14	14	40	1.86
18439--18628	53	3.6	53	68	12	142	28	16	14	40	1.88
18539--18608	33	2.1	33	89	0	104	27	18	12	41	1.87
18570--18629	20	3.0	20	85	7	86	31	18	10	40	1.84
20910--21138	51	4.6	50	83	6	252	29	26	10	33	1.89
21075--21295	76	2.9	76	91	2	343	26	26	14	32	1.95
21227--21346	51	2.4	51	84	8	163	27	25	13	33	1.93
21151--21395	130	1.9	127	86	5	350	27	24	13	34	1.93
26771--26890	52	2.3	52	94	0	204	29	17	18	35	1.94
26771--26910	52	2.7	52	85	4	176	30	17	19	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26986--27010	13	1.9	13	100	0	50	32	16	16	36	1.90
26964--27030	33	2.0	33	85	0	89	41	13	10	34	1.79
27746--27872	67	1.9	68	81	4	159	39	10	25	25	1.87
27885--28601	49	14.7	49	83	6	913	29	17	26	25	1.97
28594--28704	33	3.5	32	88	8	165	19	17	35	27	1.94
28708--28936	33	6.9	34	90	4	319	33	13	34	18	1.90
28904--28957	27	2.0	27	92	0	90	27	18	33	20	1.96

Tables:   1

The End!