genome.fa.s2652.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2652
Parameters: 2 7 7 80 10 50 1000
Length:  35264

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10975--11032	21	2.7	22	75	12	59	51	6	0	41	1.28
11036--11066	15	2.1	15	100	0	62	35	25	6	32	1.82
14254--14335	41	2.0	41	83	9	105	32	20	7	39	1.80
19215--19402	20	8.8	21	74	18	113	40	13	15	30	1.85
19218--19402	40	4.8	40	73	16	194	40	13	15	31	1.86
19163--19382	91	2.4	93	93	3	363	41	13	15	29	1.85
19329--19382	12	5.2	12	68	32	52	35	18	11	35	1.86
20100--20272	47	3.7	47	87	3	224	34	19	26	20	1.96
20193--20267	25	3.2	25	64	14	68	34	20	25	20	1.96
20100--20310	46	4.5	46	84	4	212	34	18	25	21	1.96
20100--20272	93	1.8	94	87	2	258	34	19	26	20	1.96
20424--22553	56	37.5	56	83	5	2379	24	16	28	30	1.97
20424--22553	84	25.0	84	83	5	2451	24	16	28	30	1.97
20424--22553	423	5.0	422	86	4	2626	24	16	28	30	1.97
20424--22338	28	67.8	28	83	4	2215	23	16	28	30	1.96
22253--22433	95	1.9	96	86	3	258	22	18	29	30	1.97
22193--22482	152	1.9	152	88	2	440	23	16	28	31	1.96
22345--22553	28	7.5	28	85	2	260	26	17	24	31	1.97
26272--26351	42	1.9	42	82	10	101	35	20	7	37	1.81
27588--27667	5	14.5	6	93	5	68	95	0	5	0	0.29
27599--27669	1	71.0	1	97	0	133	98	0	1	0	0.11
27794--27850	22	2.5	23	82	2	71	36	7	15	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31455--31710	20	11.7	20	72	18	172	42	12	15	30	1.83
31455--31671	91	2.4	90	92	2	362	42	11	15	30	1.82
31597--31710	40	2.8	40	94	2	194	38	14	14	32	1.86
32403--32582	48	3.8	49	81	11	178	32	16	28	22	1.96
32453--32590	47	2.9	46	84	11	170	31	13	31	23	1.93
32521--32591	22	3.1	22	65	11	61	33	14	29	22	1.93
32736--35261	28	89.6	27	78	10	1932	24	16	27	31	1.96

Tables:   1

The End!