Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2658
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 141595
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Found at i:362 original size:17 final size:16
Alignment explanation
Indices: 327--369 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
317 TAATTCAAAT
*
327 TATTTAAATTTTAAAA
1 TATTTATATTTTAAAA
*
343 TATTTATATTTTAATTA
1 TATTTATATTTTAA-AA
360 TATTTATATT
1 TATTTATATT
370 ATATTCTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTTATATTTTAAAA
Found at i:1689 original size:2 final size:2
Alignment explanation
Indices: 1682--1717 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1672 CTTTTTCTTA
1682 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1718 TCCTTTCTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1961 original size:17 final size:19
Alignment explanation
Indices: 1920--1962 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
1910 TTGTTGGAAT
*
1920 TGAATGTGAATGTTAAATA
1 TGAATATGAATGTTAAATA
*
1939 TAAATATGAAT-TT-AATA
1 TGAATATGAATGTTAAATA
1956 TGAATAT
1 TGAATAT
1963 ATGTATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 10 0.48
18 2 0.10
19 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (19 bp):
TGAATATGAATGTTAAATA
Found at i:3686 original size:23 final size:22
Alignment explanation
Indices: 3657--3709 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
3647 TACTAATTTA
**
3657 TTTATATTGTTATATATTTTATT
1 TTTATATTCATATATA-TTTATT
*
3680 TTTATATTCATATTTATTTATT
1 TTTATATTCATATATATTTATT
3702 TTATATAT
1 TT-TATAT
3710 AATTAATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (22 bp):
TTTATATTCATATATATTTATT
Found at i:3737 original size:15 final size:16
Alignment explanation
Indices: 3695--3739 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
3685 ATTCATATTT
3695 ATTTATTTTATATATA
1 ATTTATTTTATATATA
* *
3711 ATTAATTATATATA-A
1 ATTTATTTTATATATA
3726 ATTTATTTTATATA
1 ATTTATTTTATATA
3740 GTTAATTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTATTTTATATATA
Found at i:4112 original size:22 final size:22
Alignment explanation
Indices: 4069--4112 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
4059 AAGTGAATAG
* *
4069 TTTTTTTTAAAATGTATGTATT
1 TTTTTTTTAAAATATATATATT
4091 TTTTATTTTAAAA-ATATATATT
1 TTTT-TTTTAAAATATATATATT
4113 ATTATAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (22 bp):
TTTTTTTTAAAATATATATATT
Found at i:5493 original size:16 final size:16
Alignment explanation
Indices: 5472--5543 Score: 73
Period size: 16 Copynumber: 4.8 Consensus size: 16
5462 AAACTTTAAA
5472 TATTTAA-ATTTAAATT
1 TATTTAATATTT-AATT
5488 TATTTAATATTTAATT
1 TATTTAATATTTAATT
*
5504 TATTTATTATTT-ATT
1 TATTTAATATTTAATT
* *
5519 AATTTAAT-TATAA-T
1 TATTTAATATTTAATT
5533 TATTTAA-ATTT
1 TATTTAATATTT
5544 TTATTTAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
14 11 0.23
15 10 0.21
16 22 0.47
17 4 0.09
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTAATATTTAATT
Found at i:5513 original size:23 final size:22
Alignment explanation
Indices: 5470--5543 Score: 64
Period size: 23 Copynumber: 3.3 Consensus size: 22
5460 TGAAACTTTA
*
5470 AATATTTAAATTTA-AATTTATTT
1 AATATTT-AATTTATTA-TTATTT
5493 AATATTTAATTTATTTATTATTT
1 AATATTTAATTTA-TTATTATTT
* *
5516 ATTAATTTAA-TTATAATTATTT
1 AAT-ATTTAATTTATTATTATTT
5538 AA-ATTT
1 AATATTT
5544 TTATTTAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
20 4 0.09
22 15 0.34
23 18 0.41
24 7 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
AATATTTAATTTATTATTATTT
Found at i:5539 original size:19 final size:19
Alignment explanation
Indices: 5479--5539 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
5469 AAATATTTAA
5479 ATTTAAATTT-ATT-TAA-T
1 ATTT-AATTTAATTATAATT
* *
5496 ATTTAATTTATTTATTATT
1 ATTTAATTTAATTATAATT
5515 -TATTAATTTAATTATAATT
1 AT-TTAATTTAATTATAATT
5534 ATTTAA
1 ATTTAA
5540 ATTTTTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 5 0.14
17 6 0.17
18 3 0.09
19 20 0.57
20 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTAATTTAATTATAATT
Found at i:5552 original size:26 final size:27
Alignment explanation
Indices: 5479--5556 Score: 81
Period size: 26 Copynumber: 2.9 Consensus size: 27
5469 AAATATTTAA
*
5479 ATTTAAA--TTTATTTAATATTTAATTT
1 ATTTAAATTTTTATTTAAT-TATAATTT
*
5505 ATTTATTATTTATTAATTTAATTATAA-TT
1 ATTTA-AATTT-TT-ATTTAATTATAATTT
5534 ATTTAAATTTTTATTTAATTATA
1 ATTTAAATTTTTATTTAATTATA
5557 TAATCATATT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
26 16 0.36
27 3 0.07
28 4 0.09
29 8 0.18
30 6 0.14
31 7 0.16
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (27 bp):
ATTTAAATTTTTATTTAATTATAATTT
Found at i:5593 original size:17 final size:17
Alignment explanation
Indices: 5564--5612 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
5554 ATATAATCAT
*
5564 ATTTA-TAAGATATATGA
1 ATTTATTAA-ATATATAA
* *
5581 ATTTGTTAAATATTTAA
1 ATTTATTAAATATATAA
5598 ATTTATTAAATATAT
1 ATTTATTAAATATAT
5613 TTTTAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 23 0.88
18 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (17 bp):
ATTTATTAAATATATAA
Found at i:6499 original size:61 final size:61
Alignment explanation
Indices: 6434--6556 Score: 192
Period size: 61 Copynumber: 2.0 Consensus size: 61
6424 AAAATTAACT
* * * *
6434 TAGTTTCATAAAAAATAAAATTAATATAATAATATAGATAAGTGAAAATATATTAAAAATA
1 TAGTTTCATAAAAAATAAAACTAATATAATAATATAAATAAATAAAAATATATTAAAAATA
* *
6495 TAGTTTGATAAAAAATCAAACTAATATAATAATATAAATAAATAAAAATATATTAAAAATA
1 TAGTTTCATAAAAAATAAAACTAATATAATAATATAAATAAATAAAAATATATTAAAAATA
6556 T
1 T
6557 TTTTAATAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (61 bp):
TAGTTTCATAAAAAATAAAACTAATATAATAATATAAATAAATAAAAATATATTAAAAATA
Found at i:6685 original size:2 final size:2
Alignment explanation
Indices: 6678--6708 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6668 AAAGTTTTTG
6678 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6709 TTGTTTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7207 original size:20 final size:20
Alignment explanation
Indices: 7179--7218 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7169 TTCCTCTATT
*
7179 ATTTTTTTAAAATTTATTTA
1 ATTTATTTAAAATTTATTTA
**
7199 ATTTATTTAATTTTTATTTA
1 ATTTATTTAAAATTTATTTA
7219 TTAATATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
ATTTATTTAAAATTTATTTA
Found at i:7324 original size:17 final size:16
Alignment explanation
Indices: 7284--7334 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 16
7274 TATTTTTAGC
7284 ATAA-ATATAATTTTA
1 ATAATATATAATTTTA
*
7299 ATAATATATAATTATTT
1 ATAATATATAATT-TTA
*
7316 ATTATATATACATTTTA
1 ATAATATATA-ATTTTA
7333 AT
1 AT
7335 TTAATATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 4 0.13
16 8 0.27
17 15 0.50
18 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
ATAATATATAATTTTA
Found at i:8276 original size:3 final size:3
Alignment explanation
Indices: 8268--8297 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8258 GTGGTTTCTC
*
8268 ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8298 TAAATTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:11234 original size:2 final size:2
Alignment explanation
Indices: 11227--11269 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
11217 TGTCCAAAGG
11227 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11269 A
1 A
11270 AGCAATTGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12880 original size:21 final size:22
Alignment explanation
Indices: 12855--12899 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
12845 AATTCAATTC
*
12855 AAATTA-TTATTTAATAATAAA
1 AAATTATTTATTAAATAATAAA
*
12876 AAATTATTTATTAAATTATAAA
1 AAATTATTTATTAAATAATAAA
12898 AA
1 AA
12900 TATATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AAATTATTTATTAAATAATAAA
Found at i:16881 original size:30 final size:27
Alignment explanation
Indices: 16845--16903 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
16835 TTTAAAATTG
*
16845 TTAAATTAAATTAAAATTAATAAATATGAT
1 TTAAATT-AATT-AAATT-ATAAATATCAT
*
16875 TTAAATTAATTTAATTATAAATATCAT
1 TTAAATTAATTAAATTATAAATATCAT
16902 TT
1 TT
16904 TTATTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 12 0.44
28 4 0.15
29 4 0.15
30 7 0.26
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (27 bp):
TTAAATTAATTAAATTATAAATATCAT
Found at i:17734 original size:14 final size:14
Alignment explanation
Indices: 17715--17765 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 14
17705 ATTTTATTTA
17715 TTAATAATAAAAAT
1 TTAATAATAAAAAT
*
17729 TTAATAAT-ATAAT
1 TTAATAATAAAAAT
17742 TTAATCAAATTAAAAAT
1 TTAAT--AA-TAAAAAT
17759 TT-ATAAT
1 TTAATAAT
17766 TTATATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
13 10 0.32
14 10 0.32
15 2 0.06
16 3 0.10
17 6 0.19
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (14 bp):
TTAATAATAAAAAT
Found at i:20993 original size:21 final size:22
Alignment explanation
Indices: 20955--21000 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
20945 ATCTGTTGAA
* **
20955 ACTCCACCTGTTTTGGAGTA-T
1 ACTCCACCTGCTGCGGAGTACT
20976 ACTCCACCTGCTGCGGAGTACT
1 ACTCCACCTGCTGCGGAGTACT
20998 ACT
1 ACT
21001 TGTCTGAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (22 bp):
ACTCCACCTGCTGCGGAGTACT
Found at i:23424 original size:27 final size:26
Alignment explanation
Indices: 23387--23455 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 26
23377 ACATGTCATC
* * *
23387 ATTTTTGACAAATAAAAAGAAATCACT
1 ATTTTTAACAAATAAAAA-AAACCACA
*
23414 ATTTTTAACAAATATAAAATAACCACA
1 ATTTTTAACAAATA-AAAAAAACCACA
*
23441 ATTTTTAATAAATAA
1 ATTTTTAACAAATAA
23456 TGAGTAGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.03
27 31 0.86
28 4 0.11
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (26 bp):
ATTTTTAACAAATAAAAAAAACCACA
Found at i:23819 original size:20 final size:20
Alignment explanation
Indices: 23789--23854 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 20
23779 TTTTAATATT
23789 ATTTTAA-TTAATAAAATAA
1 ATTTTAAGTTAATAAAATAA
*
23808 ATTTTAAGTTAATTTAATATAA
1 ATTTTAAGTTAA--TAAAATAA
*
23830 A-TTT-AGATAA-AAAATTAA
1 ATTTTAAGTTAATAAAA-TAA
23848 ATTTTAA
1 ATTTTAA
23855 TTTATTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
17 3 0.08
18 4 0.11
19 10 0.26
20 10 0.26
21 3 0.08
22 8 0.21
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTTAAGTTAATAAAATAA
Found at i:23823 original size:29 final size:30
Alignment explanation
Indices: 23765--23825 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
23755 AATTTTAAAT
* *
23765 ATTAATTAAAATATTTTTAATATTATTTTA
1 ATTAATTAAAATAATTTTAATATTAATTTA
*
23795 ATTAA-TAAAATAAATTTTAA-GTTAATTTA
1 ATTAATTAAAAT-AATTTTAATATTAATTTA
23824 AT
1 AT
23826 ATAAATTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (30 bp):
ATTAATTAAAATAATTTTAATATTAATTTA
Found at i:23826 original size:40 final size:40
Alignment explanation
Indices: 23780--23869 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
23770 TTAAAATATT
23780 TTTAATATTATTTTA-ATTAATAAAA-TAAATTTTAAGTTAA
1 TTTAATATTATTTTAGA-TAA-AAAATTAAATTTTAAGTTAA
* * * *
23820 TTTAATATAAATTTAGATAAAAAATTAAATTTTAATTTAT
1 TTTAATATTATTTTAGATAAAAAATTAAATTTTAAGTTAA
23860 TTTAAT-TTAT
1 TTTAATATTAT
23870 AAATACTTAG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
39 6 0.14
40 35 0.83
41 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (40 bp):
TTTAATATTATTTTAGATAAAAAATTAAATTTTAAGTTAA
Found at i:24186 original size:8 final size:8
Alignment explanation
Indices: 24173--24227 Score: 53
Period size: 8 Copynumber: 7.1 Consensus size: 8
24163 GAAGGGAATC
24173 ATTTTTTT
1 ATTTTTTT
24181 A-TTTTTT
1 ATTTTTTT
24188 A--TTTTT
1 ATTTTTTT
*
24194 ATTTTTAT
1 ATTTTTTT
24202 ATTTATTTT
1 ATTT-TTTT
**
24211 ATTAATTT
1 ATTTTTTT
24219 ATTTTTTT
1 ATTTTTTT
24227 A
1 A
24228 AAAAATATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
6 6 0.16
7 7 0.18
8 19 0.50
9 6 0.16
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
ATTTTTTT
Found at i:24192 original size:6 final size:6
Alignment explanation
Indices: 24176--24224 Score: 55
Period size: 6 Copynumber: 7.8 Consensus size: 6
24166 GGGAATCATT
*
24176 TTTTTA TTTTTTA TTTTTA TTTTTA TATTTA -TTTTA TTAATTTA TTTTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT--TTTA TTTTT
24225 TTAAAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
5 4 0.11
6 21 0.57
7 6 0.16
8 6 0.16
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:24194 original size:13 final size:13
Alignment explanation
Indices: 24178--24225 Score: 64
Period size: 13 Copynumber: 3.8 Consensus size: 13
24168 GAATCATTTT
*
24178 TTTATTTTTTATT
1 TTTATTTTTTATA
24191 TTTA-TTTTTATA
1 TTTATTTTTTATA
24203 TTTATTTTATTA-A
1 TTTATTTT-TTATA
24216 TTTATTTTTT
1 TTTATTTTTT
24226 TAAAAAATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
12 13 0.41
13 16 0.50
14 3 0.09
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTATTTTTTATA
Found at i:24266 original size:29 final size:27
Alignment explanation
Indices: 24217--24270 Score: 81
Period size: 29 Copynumber: 1.9 Consensus size: 27
24207 TTTTATTAAT
24217 TTATTTTTTTAAAAAATATAATTTTGA
1 TTATTTTTTTAAAAAATATAATTTTGA
*
24244 TTATTTTATTTAATATAATATAATTTT
1 TTATTTT-TTTAA-AAAATATAATTTT
24271 AATTGTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 7 0.29
28 5 0.21
29 12 0.50
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (27 bp):
TTATTTTTTTAAAAAATATAATTTTGA
Found at i:25630 original size:2 final size:2
Alignment explanation
Indices: 25623--25649 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25613 TCAGTTGTGC
25623 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
25650 ACTGAGTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25904 original size:19 final size:18
Alignment explanation
Indices: 25880--25935 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
25870 GGGGAATTTT
*
25880 TTTTTTTTATCTTTTTCTA
1 TTTTTTTTATCTTTAT-TA
*
25899 TTTTTTTATTTCTTTATTA
1 TTTTTTT-TATCTTTATTA
*
25918 TTTATTTTTATATTTATT
1 TTT-TTTTTATCTTTATT
25936 TCATTAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 20 0.65
20 11 0.35
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTTTATCTTTATTA
Found at i:25934 original size:27 final size:25
Alignment explanation
Indices: 25897--25952 Score: 80
Period size: 23 Copynumber: 2.3 Consensus size: 25
25887 TATCTTTTTC
* *
25897 TATTTTTTTATTTCTTT-ATT-ATT
1 TATTTTTATATTTATTTCATTAATT
25920 TATTTTTATATTTATTTCATTAATT
1 TATTTTTATATTTATTTCATTAATT
25945 TATTTTTA
1 TATTTTTA
25953 AAATAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 15 0.52
24 3 0.10
25 11 0.38
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (25 bp):
TATTTTTATATTTATTTCATTAATT
Found at i:26040 original size:20 final size:20
Alignment explanation
Indices: 25950--26041 Score: 53
Period size: 20 Copynumber: 4.2 Consensus size: 20
25940 TAATTTATTT
*
25950 TTAAAATAAATATAATTTTAA
1 TTAATATAAATATAA-TTTAA
* *
25971 TTACTATTATTTAATATAATATAA
1 TTA--A-TA-TAAATATAATTTAA
*
25995 TTTTAATATAAATATGTTATTT--
1 --TTAATATAAATA--TAATTTAA
26017 TTAATATAAATATAATTTAA
1 TTAATATAAATATAATTTAA
26037 TTAAT
1 TTAAT
26042 TATTTTTTAG
Statistics
Matches: 54, Mismatches: 7, Indels: 21
0.66 0.09 0.26
Matches are distributed among these distances:
18 5 0.09
20 17 0.31
21 3 0.06
22 5 0.09
23 3 0.06
24 10 0.19
25 8 0.15
26 3 0.06
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (20 bp):
TTAATATAAATATAATTTAA
Found at i:26049 original size:31 final size:31
Alignment explanation
Indices: 25933--26112 Score: 153
Period size: 31 Copynumber: 5.8 Consensus size: 31
25923 TTTTATATTT
* *
25933 ATTTCATTAATTTATT-TTTAAAATAAATATA
1 ATTTAATTAA-TTATTATTTAATATAAATATA
*
25964 ATTTTAATT-ACTATTATTTAATAT-AATATA
1 A-TTTAATTAATTATTATTTAATATAAATATA
*
25994 ATTTTAATATAAATATGTTATTTTTAATATAAATATA
1 A-TTTAAT-T-AAT-TATTA--TTTAATATAAATATA
* *
26031 ATTTAATTAATTATTTTTTAGTATAAATATA
1 ATTTAATTAATTATTATTTAATATAAATATA
*
26062 A-TT--TTAATTATTATTTAA-ATAAATAAA
1 ATTTAATTAATTATTATTTAATATAAATATA
26089 ATTTAAATT--TTATTATTTAATATA
1 ATTT-AATTAATTATTATTTAATATA
26113 TAATTTTAAT
Statistics
Matches: 124, Mismatches: 11, Indels: 29
0.76 0.07 0.18
Matches are distributed among these distances:
27 9 0.07
28 15 0.12
29 11 0.09
30 23 0.19
31 27 0.22
32 6 0.05
33 4 0.03
34 7 0.06
35 1 0.01
36 14 0.11
37 7 0.06
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (31 bp):
ATTTAATTAATTATTATTTAATATAAATATA
Found at i:26136 original size:27 final size:26
Alignment explanation
Indices: 26013--26135 Score: 88
Period size: 27 Copynumber: 4.5 Consensus size: 26
26003 TAAATATGTT
26013 ATTTTTAATATAAATATAATTTAATTAATTA
1 ATTTTTAAT-TAAATATAA-TT--TTAA-TA
* * *
26044 TTTTTTAGTATAAATATAATTTTAATT
1 ATTTTTAAT-TAAATATAATTTTAATA
* *
26071 ATTATTTAAATAAATA-AAATTTAA-A
1 ATT-TTTAATTAAATATAATTTTAATA
* *
26096 TTTTATTATTTAATATATAATTTTAATA
1 ATTT-TTAATTAA-ATATAATTTTAATA
26124 ATTTTTAATTAA
1 ATTTTTAATTAA
26136 TTATTATATA
Statistics
Matches: 73, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
24 1 0.01
25 8 0.11
26 10 0.14
27 23 0.32
28 12 0.16
30 2 0.03
31 17 0.23
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.54
Consensus pattern (26 bp):
ATTTTTAATTAAATATAATTTTAATA
Found at i:30894 original size:2 final size:2
Alignment explanation
Indices: 30887--30915 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
30877 TTATTTCCAC
30887 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
30916 TACACTAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34595 original size:47 final size:47
Alignment explanation
Indices: 34526--34621 Score: 147
Period size: 47 Copynumber: 2.0 Consensus size: 47
34516 CATGGTCACA
* * *
34526 ATCACCACAACTTTAATTGAATGATTTGAGTCGTAGGCCCAAGCCCT
1 ATCACCACAACATTAATTGAATGACTTGAGTCGTAAGCCCAAGCCCT
* *
34573 ATCACCATAACATTAATTGAATGACTTGAGTTGTAAGCCCAAGCCCT
1 ATCACCACAACATTAATTGAATGACTTGAGTCGTAAGCCCAAGCCCT
34620 AT
1 AT
34622 ACCTTTTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (47 bp):
ATCACCACAACATTAATTGAATGACTTGAGTCGTAAGCCCAAGCCCT
Found at i:34783 original size:11 final size:12
Alignment explanation
Indices: 34737--34783 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
34727 AATTTAATCA
34737 ATTTAAATTATT
1 ATTTAAATTATT
* **
34749 ATTTAAATCAAAA
1 ATTTAAAT-TATT
34762 ATTTAAATTATT
1 ATTTAAATTATT
34774 ATTT-AATTAT
1 ATTTAAATTAT
34784 AAATATTATA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
11 6 0.21
12 13 0.46
13 9 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (12 bp):
ATTTAAATTATT
Found at i:34821 original size:32 final size:31
Alignment explanation
Indices: 34762--34830 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
34752 TAAATCAAAA
*
34762 ATTTAAATTATTATTTAATTATAAATATTAT
1 ATTTAAAATATTATTTAATTATAAATATTAT
* * *
34793 ATTTAAAATATTTTTTTAATTTTTAATATTAT
1 ATTTAAAATA-TTATTTAATTATAAATATTAT
34825 -TTTAAA
1 ATTTAAA
34831 TAATAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 15 0.45
32 18 0.55
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (31 bp):
ATTTAAAATATTATTTAATTATAAATATTAT
Found at i:35323 original size:24 final size:24
Alignment explanation
Indices: 35272--35326 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 24
35262 TTTATATATT
35272 TTTATTTAAATTTAAATAAAAATA
1 TTTATTTAAATTTAAATAAAAATA
*
35296 -TTATTTTAA-TT-AATAAATAATGA
1 TTTATTTAAATTTAAATAAA-AAT-A
35319 TTTATTTA
1 TTTATTTA
35327 TACTAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 6 0.23
22 5 0.19
23 9 0.35
24 6 0.23
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
TTTATTTAAATTTAAATAAAAATA
Found at i:37776 original size:50 final size:50
Alignment explanation
Indices: 37716--38174 Score: 684
Period size: 50 Copynumber: 9.2 Consensus size: 50
37706 TATACTTAGA
* *
37716 GTCAACAATTATGGCCACTTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* *
37766 ATCAACAATTATGGCCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* * *
37816 GTCAACAATTATGGCCACCTCCATTTATTGTCAAAGGTTGGTGAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* * * *
37866 GTTAACAATTATGACCACCTCCTTTTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* *
37916 GTCAACAATTATGGCTACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* *
37966 GTCAACAATTATGGTCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
*
38016 GTCAACAATTATGGCCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* * * *
38066 GTCAACAATTATAGCCATCTCTCTCTATTGTCAAAGGTTGGTAAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
* * * * * *
38116 GTTAACAATTACGACCACCTCTCTCTATTGTCAAAGGTTGGTGAAGGATA
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
38166 GTCAACAAT
1 GTCAACAAT
38175 GGCAACAACT
Statistics
Matches: 372, Mismatches: 37, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 372 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (50 bp):
GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
Found at i:41432 original size:13 final size:13
Alignment explanation
Indices: 41414--41438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41404 CATAAAATGT
41414 TGTATCGATACAA
1 TGTATCGATACAA
41427 TGTATCGATACA
1 TGTATCGATACA
41439 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:41522 original size:13 final size:13
Alignment explanation
Indices: 41504--41528 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41494 ATTACTCACA
41504 TGTATCGATACAT
1 TGTATCGATACAT
41517 TGTATCGATACA
1 TGTATCGATACA
41529 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41593 original size:52 final size:52
Alignment explanation
Indices: 41537--41661 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
41527 CACTGATCTT
*
41537 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
41589 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
41641 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
41662 CTTTTCATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:46220 original size:50 final size:50
Alignment explanation
Indices: 46161--46569 Score: 665
Period size: 50 Copynumber: 8.2 Consensus size: 50
46151 TATACTTAGA
*
46161 GTCAACAATTATGGCCAGCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
* * *
46211 GTCAACAATTATGGTCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
* *
46261 GTTAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTAAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
*
46311 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTAAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
* *
46361 GTCAACAATTATGGCCACCTCCTTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
46411 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
*
46461 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATC
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
* * * * * * *
46511 GTTAACAATTACGACCACCTCTCTTTATTGTCAAAGGTTGGTGAAGGATA
1 GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
46561 GTCAACAAT
1 GTCAACAAT
46570 AACAACAACT
Statistics
Matches: 335, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 335 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (50 bp):
GTCAACAATTATGGCCACCTCCCTCTATTGTCAAAGGTTGGTGAAGAATT
Found at i:46765 original size:24 final size:23
Alignment explanation
Indices: 46738--46792 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
46728 AAATTTTGTA
*
46738 ATATTTTTATATTATAATTATATT
1 ATATTTTTATATT-TAATTATAAT
* *
46762 ATATTTGTATATTTTATTATAAT
1 ATATTTTTATATTTAATTATAAT
46785 -TATTTTTA
1 ATATTTTTA
46793 AAATATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 7 0.26
23 8 0.30
24 12 0.44
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (23 bp):
ATATTTTTATATTTAATTATAAT
Found at i:46774 original size:13 final size:12
Alignment explanation
Indices: 46742--46887 Score: 61
Period size: 11 Copynumber: 11.8 Consensus size: 12
46732 TTTGTAATAT
46742 TTTTATATTATA
1 TTTTATATTATA
*
46754 -ATTATATTATA
1 TTTTATATTATA
*
46765 TTTGTATATTTTA
1 TTT-TATATTATA
*
46778 TTATA-ATTAT-
1 TTTTATATTATA
*
46788 TTTTAAAATATTTTA
1 TTTT---ATATTATA
*
46803 TATTTATA-TAAA
1 T-TTTATATTATA
* *
46815 TTTTAAAATAT-
1 TTTTATATTATA
46826 TTTTAATATT-TA
1 TTTT-ATATTATA
* *
46838 TATTATATGATA
1 TTTTATATTATA
*
46850 TTTTAATTATTTTA
1 TTTT-A-TATTATA
46864 TTTATATAATTATA
1 TTT-TAT-ATTATA
*
46878 TTTAATATTA
1 TTTTATATTA
46888 ATTGCTGTAC
Statistics
Matches: 98, Mismatches: 20, Indels: 32
0.65 0.13 0.21
Matches are distributed among these distances:
10 3 0.03
11 28 0.29
12 23 0.23
13 18 0.18
14 21 0.21
15 2 0.02
16 3 0.03
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.60
Consensus pattern (12 bp):
TTTTATATTATA
Found at i:46799 original size:38 final size:38
Alignment explanation
Indices: 46757--46859 Score: 95
Period size: 38 Copynumber: 2.7 Consensus size: 38
46747 TATTATAATT
* *
46757 ATATTATATTTGTATATTTTATTATAATTATTTTTAAA
1 ATATTATATTTATATATTTTATTATAAATATTTTTAAA
** *
46795 ATATTTTATATTTATATAAATT-TTA-AAATATTTTTAAT
1 ATA--TTATATTTATATATTTTATTATAAATATTTTTAAA
46833 AT-TTATATTATATGATATTTTAATTAT
1 ATATTATATT-TAT-ATATTTT-ATTAT
46860 TTTATTTATA
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
35 7 0.14
36 3 0.06
37 5 0.10
38 16 0.31
39 6 0.12
40 14 0.27
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (38 bp):
ATATTATATTTATATATTTTATTATAAATATTTTTAAA
Found at i:47901 original size:18 final size:18
Alignment explanation
Indices: 47840--47901 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 18
47830 TTGTTTTAAC
* *
47840 AAAATAATAATAAAATTA
1 AAAATAATAATTAAATAA
*
47858 ATAAT-A-AATTAAATAA
1 AAAATAATAATTAAATAA
** *
47874 ATTATTATAATTAAATAA
1 AAAATAATAATTAAATAA
47892 AAAATAATAA
1 AAAATAATAA
47902 ATTGACCTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
16 12 0.34
17 2 0.06
18 21 0.60
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAATAATAATTAAATAA
Found at i:48791 original size:20 final size:20
Alignment explanation
Indices: 48752--48791 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
48742 TAAGTTATTG
*
48752 AAAAAATAAAGATAATAAAA
1 AAAAAATAAACATAATAAAA
48772 AAAAAATAAAACATAA-AAAA
1 AAAAAAT-AAACATAATAAAA
48792 TTTAACGAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (20 bp):
AAAAAATAAACATAATAAAA
Found at i:49012 original size:27 final size:27
Alignment explanation
Indices: 48980--49054 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
48970 ATAAGCCATA
48980 ATTTTTGATAAACAAAAAGGAACCACC
1 ATTTTTGATAAACAAAAAGGAACCACC
* * * *
49007 ATTTTTGATAAATACAAAGTAACCACT
1 ATTTTTGATAAACAAAAAGGAACCACC
* *
49034 ATTGTTGACAAACACAAAAGG
1 ATTTTTGATAAACA-AAAAGG
49055 TGACTTTTGT
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
27 34 0.89
28 4 0.11
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.25
Consensus pattern (27 bp):
ATTTTTGATAAACAAAAAGGAACCACC
Found at i:55417 original size:24 final size:26
Alignment explanation
Indices: 55389--55441 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
55379 TTTTTATTAT
55389 TAATATTTA-TATAAT-TAATTATAA
1 TAATATTTATTATAATATAATTATAA
*
55413 TAATATTTATTATATTATAATTATAA
1 TAATATTTATTATAATATAATTATAA
55439 TAA
1 TAA
55442 GCATCACGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 9 0.35
25 5 0.19
26 12 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TAATATTTATTATAATATAATTATAA
Found at i:57299 original size:116 final size:116
Alignment explanation
Indices: 57095--57328 Score: 459
Period size: 116 Copynumber: 2.0 Consensus size: 116
57085 AAAAAGAAGA
57095 AGCAAGACGGGTGGGAACACTTGAAAAAGTAAAGAGCTCATGGTGGGAAAAATCCGATTGTGATC
1 AGCAAGACGGGTGGGAACACTTGAAAAAGTAAAGAGCTCATGGTGGGAAAAATCCGATTGTGATC
57160 CTTAGTTCTATCATAAAGATATTACTTTTAGATTTTCTTGCCAAGGAAAGC
66 CTTAGTTCTATCATAAAGATATTACTTTTAGATTTTCTTGCCAAGGAAAGC
57211 AGCAAGACGGGTGGGAACACTTGAAAAAGTAAAGAGCTCATGGTGGGAAAAATCCGATTGTGATC
1 AGCAAGACGGGTGGGAACACTTGAAAAAGTAAAGAGCTCATGGTGGGAAAAATCCGATTGTGATC
*
57276 CTTAGTTCTATTATAAAGATATTACTTTTAGATTTTCTTGCCAAGGAAAGC
66 CTTAGTTCTATCATAAAGATATTACTTTTAGATTTTCTTGCCAAGGAAAGC
57327 AG
1 AG
57329 AAGTTACAAA
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.28
Consensus pattern (116 bp):
AGCAAGACGGGTGGGAACACTTGAAAAAGTAAAGAGCTCATGGTGGGAAAAATCCGATTGTGATC
CTTAGTTCTATCATAAAGATATTACTTTTAGATTTTCTTGCCAAGGAAAGC
Found at i:62062 original size:20 final size:20
Alignment explanation
Indices: 62015--62089 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
62005 AAAAAGACAT
*
62015 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
62034 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
62055 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
62075 AATGTATCGATACAT
1 AATGTATCGATACAT
62090 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:62083 original size:40 final size:39
Alignment explanation
Indices: 62012--62089 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
62002 GGTAAAAAGA
* *
62012 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
62051 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
62090 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:62667 original size:32 final size:32
Alignment explanation
Indices: 62618--63262 Score: 1114
Period size: 32 Copynumber: 20.2 Consensus size: 32
62608 AATATGGTGA
* * **
62618 TTTGAAAAGGGTTGCCACTGACTTGCATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
62650 TTTTAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
62682 TTTGAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
62714 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
62746 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
62778 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
62810 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
62842 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
62874 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
62906 TTTGGAATGGGTTGCCACCGACTTGTGTGGGT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
62938 TTTGAAATGGGTTGCCACCGACTTGTGTGGGG
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
62970 TTTGAAATGGGTTGCCACCGACTTGTGTGGGG
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
63002 TTTGAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
63034 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
63066 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
63098 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
63130 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
63162 TTTGAAATGAGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
63194 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
63226 TTTGAAATGGGTTGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
63256 TTTGAAA
1 TTTGAAA
63263 GGGATGAACA
Statistics
Matches: 589, Mismatches: 24, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
30 14 0.02
31 1 0.00
32 574 0.97
ACGTcount: A:0.16, C:0.18, G:0.35, T:0.32
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:64505 original size:14 final size:14
Alignment explanation
Indices: 64486--64523 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
64476 GACCCTTCTA
64486 TTTTTTGCTTTT-TT
1 TTTTTTG-TTTTGTT
64500 TTTTTTGTTTTGTT
1 TTTTTTGTTTTGTT
64514 TTTTTT-TTTT
1 TTTTTTGTTTT
64524 TTGGGTGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.35
14 15 0.65
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (14 bp):
TTTTTTGTTTTGTT
Found at i:64524 original size:19 final size:19
Alignment explanation
Indices: 64488--64523 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
64478 CCCTTCTATT
64488 TTTTGCTTTTTTTTTTTTG
1 TTTTGCTTTTTTTTTTTTG
64507 TTTTG-TTTTTTTTTTTT
1 TTTTGCTTTTTTTTTTTT
64524 TTGGGTGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (19 bp):
TTTTGCTTTTTTTTTTTTG
Found at i:70418 original size:21 final size:20
Alignment explanation
Indices: 70392--70430 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
70382 TTTTGGAGCA
70392 AGGTTTCGTAAAGCTCTTTAT
1 AGGTTTCGTAAAGC-CTTTAT
70413 AGGTTTCGTAAAGCCTTT
1 AGGTTTCGTAAAGCCTTT
70431 GTTGATTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (20 bp):
AGGTTTCGTAAAGCCTTTAT
Found at i:78565 original size:20 final size:20
Alignment explanation
Indices: 78518--78592 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
78508 AAAAAGACAT
*
78518 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
78537 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
78558 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
78578 AATGTATCGATACAT
1 AATGTATCGATACAT
78593 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:78586 original size:40 final size:39
Alignment explanation
Indices: 78515--78592 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
78505 GGTAAAAAGA
* *
78515 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
78554 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
78593 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:80340 original size:16 final size:16
Alignment explanation
Indices: 80319--80349 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80309 TAGATAATAG
80319 TTATTTTATTATAATT
1 TTATTTTATTATAATT
*
80335 TTATTTTATTTTAAT
1 TTATTTTATTATAAT
80350 AAACTAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTATTTTATTATAATT
Found at i:81680 original size:20 final size:21
Alignment explanation
Indices: 81637--81681 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
81627 TCCATTAAAT
*
81637 TAAATTAATGTTTAAAATATA
1 TAAATTAATATTTAAAATATA
81658 TAAA-TAATATTTAAAAGTA-A
1 TAAATTAATATTTAAAA-TATA
81678 TAAA
1 TAAA
81682 ATTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (21 bp):
TAAATTAATATTTAAAATATA
Found at i:82454 original size:7 final size:7
Alignment explanation
Indices: 82434--82464 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
82424 TCAAATTTAG
82434 ATTTAAA
1 ATTTAAA
82441 A-TTAAA
1 ATTTAAA
82447 ATTTAAA
1 ATTTAAA
82454 ATTTAAA
1 ATTTAAA
82461 ATTT
1 ATTT
82465 TTTTAAGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
ATTTAAA
Found at i:82693 original size:27 final size:25
Alignment explanation
Indices: 82663--82716 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
82653 AAATCAAGTA
*
82663 TTTAATATTTTATCAACA-AATCTAATT
1 TTTAAT-TTTT-TCAA-AGAATATAATT
82690 TTTAATTTTTTCAAAGAATATAATT
1 TTTAATTTTTTCAAAGAATATAATT
82715 TT
1 TT
82717 ATCTTTTCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 1 0.04
25 14 0.56
26 4 0.16
27 6 0.24
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (25 bp):
TTTAATTTTTTCAAAGAATATAATT
Found at i:83023 original size:16 final size:16
Alignment explanation
Indices: 83002--83041 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
82992 CTTATTAACT
*
83002 TTTAACTCTTATTTAG
1 TTTAACTCATATTTAG
83018 TTTAACTCATATTTA-
1 TTTAACTCATATTTAG
*
83033 ATTAACTCA
1 TTTAACTCA
83042 CTTGAAGAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.33, C:0.15, G:0.03, T:0.50
Consensus pattern (16 bp):
TTTAACTCATATTTAG
Found at i:84762 original size:20 final size:20
Alignment explanation
Indices: 84737--84779 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
84727 CAAGCAGCAT
84737 CATATCCCCAAACATTTATC
1 CATATCCCCAAACATTTATC
84757 CATATCCCCAAACATTTATC
1 CATATCCCCAAACATTTATC
84777 CAT
1 CAT
84780 CACGATACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.30
Consensus pattern (20 bp):
CATATCCCCAAACATTTATC
Found at i:94258 original size:20 final size:19
Alignment explanation
Indices: 94181--94256 Score: 98
Period size: 20 Copynumber: 3.8 Consensus size: 19
94171 TTTTTACCCA
94181 AATGTATCGATACATTTTT
1 AATGTATCGATACATTTTT
* * *
94200 CAATGTATCGATATATGTATG
1 -AATGTATCGATACAT-TTTT
94221 AATGTATCGATACATTCTTT
1 AATGTATCGATACATT-TTT
94241 AATGTATCGATACATT
1 AATGTATCGATACATT
94257 CTATCTTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.94
21 2 0.04
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (19 bp):
AATGTATCGATACATTTTT
Found at i:94280 original size:31 final size:31
Alignment explanation
Indices: 94242--94318 Score: 145
Period size: 31 Copynumber: 2.5 Consensus size: 31
94232 ACATTCTTTA
94242 ATGTATCGATACATTCTATCTTTTTACCCAG
1 ATGTATCGATACATTCTATCTTTTTACCCAG
*
94273 ATGTATCGATACATTCTGTCTTTTTACCCAG
1 ATGTATCGATACATTCTATCTTTTTACCCAG
94304 ATGTATCGATACATT
1 ATGTATCGATACATT
94319 ATTCAATGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.42
Consensus pattern (31 bp):
ATGTATCGATACATTCTATCTTTTTACCCAG
Found at i:96827 original size:14 final size:15
Alignment explanation
Indices: 96808--96842 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
96798 TTCTTTATTG
*
96808 TTATTTTGTGTAA-A
1 TTATTTTATGTAACA
96822 TTATTTTATGTAACA
1 TTATTTTATGTAACA
96837 TTATTT
1 TTATTT
96843 CACCTATTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.29, C:0.03, G:0.09, T:0.60
Consensus pattern (15 bp):
TTATTTTATGTAACA
Found at i:100678 original size:2 final size:2
Alignment explanation
Indices: 100671--100700 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
100661 AAGATTAAGT
100671 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100701 CACATCCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:100824 original size:169 final size:168
Alignment explanation
Indices: 100538--100864 Score: 609
Period size: 169 Copynumber: 1.9 Consensus size: 168
100528 TTACTTCATG
*
100538 CACAAGAACTTTGTTTCCTTGTAATTTCCAAATTTTGGATCATATGTTTGGATACCACAAATACA
1 CACAAGAACTTTGTTTCCTTGTAATTTCAAAATTTTGGATCATATGTTTGGATACCACAAATACA
* *
100603 ATCAAAGAGTACAGGAAATAAATTGTCTAATTGTTAACAAGAACTTTGATTTTTCAGAAAGATTA
66 ATCAAAGAGAACAGGAAATAAATTGCCTAATTGTTAACAAGAACTTTGATTTTTCAGAAAGATTA
100668 AGTTATATATATATATATATATATATATATATACACATC
131 AGTTATATATATATATATATA-ATATATATATACACATC
*
100707 CACAAGCACTTTGTTTCCTTGTAATTTCAAAATTTTGGATCATATGTTTGGATACCACAAATACA
1 CACAAGAACTTTGTTTCCTTGTAATTTCAAAATTTTGGATCATATGTTTGGATACCACAAATACA
100772 ATCAAAGAGAACAGGAAATAAATTGCCTAATTGTTAACAAGAACTTTGATTTTTCAGAAAGATTA
66 ATCAAAGAGAACAGGAAATAAATTGCCTAATTGTTAACAAGAACTTTGATTTTTCAGAAAGATTA
100837 AGTTATATATATATATATATAATATATA
131 AGTTATATATATATATATATAATATATA
100865 ATTGAATTTC
Statistics
Matches: 154, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
168 7 0.05
169 147 0.95
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (168 bp):
CACAAGAACTTTGTTTCCTTGTAATTTCAAAATTTTGGATCATATGTTTGGATACCACAAATACA
ATCAAAGAGAACAGGAAATAAATTGCCTAATTGTTAACAAGAACTTTGATTTTTCAGAAAGATTA
AGTTATATATATATATATATAATATATATATACACATC
Found at i:101505 original size:28 final size:30
Alignment explanation
Indices: 101432--101505 Score: 82
Period size: 28 Copynumber: 2.5 Consensus size: 30
101422 TTATTATTAT
*
101432 TTAAAAATAATATTAAAATTATATTTTATAA
1 TTAAAATTAAT-TTAAAATTATATTTTATAA
* * *
101463 TTAAATTTAA-ATAAAATT-TATTTTTTAA
1 TTAAAATTAATTTAAAATTATATTTTATAA
101491 -TAAAATTAATTTAAA
1 TTAAAATTAATTTAAA
101506 TTAAATATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
27 8 0.22
28 13 0.36
29 7 0.19
31 8 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
TTAAAATTAATTTAAAATTATATTTTATAA
Found at i:101785 original size:32 final size:32
Alignment explanation
Indices: 101724--101813 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 32
101714 ATAAATATTT
* *
101724 ATATATTTTATTATATTATAA-TTATATTTA-AA
1 ATATTTTTTATTATA-TAAAATTTA-ATTTATAA
*
101756 ATATTTTTTATTTATATAAAATTTAATTTATTA
1 ATATTTTTTA-TTATATAAAATTTAATTTATAA
* * *
101789 ATAATTTATATTATATAAATTTTAA
1 ATATTTTTTATTATATAAAATTTAA
101814 AATTTTTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
32 32 0.65
33 17 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (32 bp):
ATATTTTTTATTATATAAAATTTAATTTATAA
Found at i:101809 original size:31 final size:29
Alignment explanation
Indices: 101762--101873 Score: 95
Period size: 31 Copynumber: 3.6 Consensus size: 29
101752 TAAAATATTT
101762 TTTAT-TTATATAAAATTT-AATTTATTAATAA
1 TTTATATTATAT-AAATTTAAATTT-TT-AT-A
101793 TTTATATTATATAAATTTTAAAATTTTTATA
1 TTTATATTATATAAA-TTT-AAATTTTTATA
*
101824 TTTATATTATATAATATTTTAATATTTTTTTA
1 TTTATATTATATAA-A-TTTAA-ATTTTTATA
101856 TATTATATTCATA-AAATT
1 T-TTATATT-ATATAAATT
101874 ATATATAATA
Statistics
Matches: 72, Mismatches: 1, Indels: 16
0.81 0.01 0.18
Matches are distributed among these distances:
31 27 0.38
32 26 0.36
33 11 0.15
34 8 0.11
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (29 bp):
TTTATATTATATAAATTTAAATTTTTATA
Found at i:101840 original size:16 final size:15
Alignment explanation
Indices: 101718--101842 Score: 62
Period size: 16 Copynumber: 8.0 Consensus size: 15
101708 AATTTAATAA
101718 ATATTTAT-ATATTT
1 ATATTTATAATATTT
* *
101732 -TATTATATTATAATT
1 ATATT-TATAATATTT
*
101747 ATATTTAAAATATTTT
1 ATATTTATAATA-TTT
* *
101763 TTATTTATATAAAATTT
1 ATA-TT-TATAATATTT
101780 A-ATTTATTAATAATTT
1 ATATTTA-TAAT-ATTT
101796 ATATTATATAA-ATTTT
1 ATATT-TATAATA-TTT
* *
101812 AAAATTT-TTATATTT
1 -ATATTTATAATATTT
101827 ATATTATATAATATTT
1 ATATT-TATAATATTT
101843 TAATATTTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 28
0.67 0.10 0.23
Matches are distributed among these distances:
13 4 0.05
14 9 0.11
15 22 0.27
16 26 0.31
17 15 0.18
18 7 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATTTATAATATTT
Found at i:101856 original size:23 final size:24
Alignment explanation
Indices: 101815--101864 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
101805 AAATTTTAAA
*
101815 ATTTTTATATTTATATTATATAAT
1 ATTTTAATATTTATATTATATAAT
* *
101839 ATTTTAATATTT-TTTTATATTAT
1 ATTTTAATATTTATATTATATAAT
101862 ATT
1 ATT
101865 CATAAAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (24 bp):
ATTTTAATATTTATATTATATAAT
Found at i:102122 original size:3 final size:3
Alignment explanation
Indices: 102114--102157 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
102104 GGATTAGCAA
102114 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
102158 AAGATATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:102278 original size:14 final size:15
Alignment explanation
Indices: 102226--102293 Score: 57
Period size: 15 Copynumber: 4.4 Consensus size: 15
102216 TTTTTTATTA
102226 TTAAATATTAAAAATAT
1 TTAAA-ATT-AAAATAT
* * *
102243 TTACATTTAATCATAT
1 TTAAAATTAA-AATAT
*
102259 TCAAAA-TAAAATAT
1 TTAAAATTAAAATAT
*
102273 TTAAAATTAAAAAAT
1 TTAAAATTAAAATAT
102288 TTAAAA
1 TTAAAA
102294 AAACTTTTAT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
14 9 0.22
15 18 0.45
16 9 0.22
17 4 0.10
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.38
Consensus pattern (15 bp):
TTAAAATTAAAATAT
Found at i:104572 original size:18 final size:17
Alignment explanation
Indices: 104559--104619 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
104549 ATTTATGTTT
*
104559 AAATAAATTATTATTTC
1 AAATAAAATATTATTTC
104576 AAATAAAATATTAATTT-
1 AAATAAAATATT-ATTTC
* *
104593 ATATTAAAATTTTATTT-
1 A-AATAAAATATTATTTC
104610 AAATATAAAT
1 AAATA-AAAT
104620 TAAAAGTTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
16 3 0.08
17 21 0.57
18 13 0.35
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AAATAAAATATTATTTC
Found at i:107245 original size:44 final size:45
Alignment explanation
Indices: 107195--107286 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
107185 TAATTTAATC
*
107195 AAGTAATTATAAC-AAAAAATTAACTCA-TCATACATAAAGGATGT
1 AAGTAATTATAACAAAAAAACTAACTCACT-ATACATAAAGGATGT
* * *
107239 AAGTAATTTTAACAAAAAAACTAACTTACTATACATAAATGATGT
1 AAGTAATTATAACAAAAAAACTAACTCACTATACATAAAGGATGT
107284 AAG
1 AAG
107287 CCTATTAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
44 12 0.29
45 29 0.69
46 1 0.02
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.28
Consensus pattern (45 bp):
AAGTAATTATAACAAAAAAACTAACTCACTATACATAAAGGATGT
Found at i:110646 original size:26 final size:26
Alignment explanation
Indices: 110612--110686 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 26
110602 ATAAAGCATC
*
110612 ATAATTATATTTAA-AATTT-TATAAAT
1 ATAAATATA-TTAATAATTTATAT-AAT
*
110638 ATAAATATATTAATAATTTATATTAT
1 ATAAATATATTAATAATTTATATAAT
*
110664 ATAAAT-TA-TGATATATTTATATA
1 ATAAATATATTAATA-ATTTATATA
110687 TTGGTATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
24 4 0.10
25 14 0.33
26 21 0.50
27 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
ATAAATATATTAATAATTTATATAAT
Found at i:110672 original size:14 final size:14
Alignment explanation
Indices: 110614--110672 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
110604 AAAGCATCAT
110614 AATTATATT-TA-A
1 AATTATATTATATA
* *
110626 AATTTTATAAATATA
1 AATTATAT-TATATA
110641 AA-TATATTA-ATA
1 AATTATATTATATA
*
110653 ATTTATATTATATA
1 AATTATATTATATA
110667 AATTAT
1 AATTAT
110673 GATATATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
12 11 0.31
13 8 0.22
14 14 0.39
15 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
AATTATATTATATA
Found at i:112389 original size:23 final size:23
Alignment explanation
Indices: 112363--112406 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
112353 GTTAGGGATT
112363 TTGATTTATGACTTAAAATCAAA
1 TTGATTTATGACTTAAAATCAAA
*
112386 TTGATTTGTGACTTAAAATCA
1 TTGATTTATGACTTAAAATCA
112407 GTGGGTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (23 bp):
TTGATTTATGACTTAAAATCAAA
Found at i:113070 original size:23 final size:21
Alignment explanation
Indices: 113035--113080 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
113025 AATATAATTT
113035 AATTAAATTAATTT-ACATAAA
1 AATTAAATTAATTTAAC-TAAA
113056 AATTAATATTAAATTTAACTAAA
1 AATTAA-ATT-AATTTAACTAAA
113079 AA
1 AA
113081 AATATAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.27
22 3 0.14
23 11 0.50
24 2 0.09
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (21 bp):
AATTAAATTAATTTAACTAAA
Found at i:115675 original size:20 final size:21
Alignment explanation
Indices: 115652--115700 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
115642 ATAATTTTTA
*
115652 TTTTTAAATATATTT-TTA-AT
1 TTTTTAAATAT-TTTAATATAT
*
115672 TTTTTTAATATTTTAATATAT
1 TTTTTAAATATTTTAATATAT
115693 TTTTTAAA
1 TTTTTAAA
115701 AATAACATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 12 0.50
21 9 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTTTAAATATTTTAATATAT
Found at i:117778 original size:22 final size:22
Alignment explanation
Indices: 117753--117821 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
117743 TTAAGATAAA
117753 TAAATTATTTTGAATAAAATTT
1 TAAATTATTTTGAATAAAATTT
*
117775 TAAATT-TTGTTTAAT-AAA---
1 TAAATTATT-TTGAATAAAATTT
*
117793 CAAATTAATTTTGAATAAAATTT
1 TAAATT-ATTTTGAATAAAATTT
117816 ATAAAT
1 -TAAAT
117822 AAACTTGTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
18 5 0.14
19 5 0.14
20 5 0.14
21 5 0.14
22 11 0.31
24 4 0.11
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.46
Consensus pattern (22 bp):
TAAATTATTTTGAATAAAATTT
Found at i:117781 original size:19 final size:19
Alignment explanation
Indices: 117759--117821 Score: 56
Period size: 19 Copynumber: 3.1 Consensus size: 19
117749 TAAATAAATT
117759 ATTTTGAATAAAATTTTAA
1 ATTTTGAATAAAATTTTAA
**
117778 ATTTTGTTTAATAAACAAATT-A
1 ATTTTG---AATAAA-ATTTTAA
117800 ATTTTGAATAAAATTTATAA
1 ATTTTGAATAAAATTT-TAA
117820 AT
1 AT
117822 AAACTTGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 11
0.69 0.08 0.22
Matches are distributed among these distances:
18 2 0.06
19 13 0.38
20 3 0.09
22 13 0.38
23 3 0.09
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.46
Consensus pattern (19 bp):
ATTTTGAATAAAATTTTAA
Found at i:118666 original size:23 final size:23
Alignment explanation
Indices: 118632--118675 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
118622 GTTAGGGATT
118632 TTGATTTATGACTTAAAATCAAA
1 TTGATTTATGACTTAAAATCAAA
*
118655 TTGATTTGTGACTTAAAATCA
1 TTGATTTATGACTTAAAATCA
118676 GTGGGTGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (23 bp):
TTGATTTATGACTTAAAATCAAA
Found at i:124817 original size:29 final size:29
Alignment explanation
Indices: 124762--124852 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
124752 TTAATATATA
* * *
124762 TTAAGTGTCTATTTAAGTATAAATTAAAAG
1 TTAA-TGTTTATTTAGGTACAAATTAAAAG
* *
124792 TT-ATGATTTATTTAGGTACAAGTTAAATG
1 TTAATG-TTTATTTAGGTACAAATTAAAAG
* *
124821 TTAATGTTTATTT-GGTACAAATGAAAAA
1 TTAATGTTTATTTAGGTACAAATTAAAAG
124849 TTAA
1 TTAA
124853 GAGATAATTA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
28 17 0.34
29 28 0.56
30 5 0.10
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (29 bp):
TTAATGTTTATTTAGGTACAAATTAAAAG
Found at i:125362 original size:2 final size:2
Alignment explanation
Indices: 125355--125392 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
125345 AATTCCAATG
125355 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
125393 TGAAAGGGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125978 original size:19 final size:19
Alignment explanation
Indices: 125935--125985 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
125925 CAACTTGTAA
*
125935 AATAAAATTATAACTAATAT
1 AATAAAA-TATAAATAATAT
* *
125955 TATAAAATATAAATATTAT
1 AATAAAATATAAATAATAT
*
125974 AATAAAAAATAA
1 AATAAAATATAA
125986 TTGGTCGAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAAAATATAAATAATAT
Found at i:126302 original size:35 final size:35
Alignment explanation
Indices: 126256--126328 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
126246 ATAATCTAAG
* *
126256 ATTTTGTCATAAAATGACTTTATTTGATTCAAAAT
1 ATTTTATCATAAAATGACCTTATTTGATTCAAAAT
*
126291 ATTTTATCATAAGATGACCTTATTTGATTCAAAAT
1 ATTTTATCATAAAATGACCTTATTTGATTCAAAAT
126326 ATT
1 ATT
126329 ACTAAAATTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (35 bp):
ATTTTATCATAAAATGACCTTATTTGATTCAAAAT
Found at i:127956 original size:2 final size:2
Alignment explanation
Indices: 127949--127975 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
127939 TTGCTTATTT
127949 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
127976 TGAAAATCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:133311 original size:42 final size:42
Alignment explanation
Indices: 133259--133356 Score: 117
Period size: 42 Copynumber: 2.3 Consensus size: 42
133249 TTTCTAATAT
* * * *
133259 AAACACCACTAAATTTAAAAATTTAACGGTATTTAT-ATTTCA
1 AAACGCCACTAAATTTAAAAATTTAACGGCATTCATAAATT-A
* *
133301 AAACGCCACTAAATTTATATATTTAACGGCATTCATAAATTA
1 AAACGCCACTAAATTTAAAAATTTAACGGCATTCATAAATTA
*
133343 AAATGCCACTAAAT
1 AAACGCCACTAAAT
133357 ATTCAAATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 45 0.94
43 3 0.06
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.33
Consensus pattern (42 bp):
AAACGCCACTAAATTTAAAAATTTAACGGCATTCATAAATTA
Found at i:133367 original size:42 final size:40
Alignment explanation
Indices: 133259--133367 Score: 103
Period size: 42 Copynumber: 2.6 Consensus size: 40
133249 TTTCTAATAT
* * * *
133259 AAACACCACTAAATTTAAAAATTTAACGGTATTTATATTTCA
1 AAACGCCACTAAATTT--AAATTTAACGGCATTCATAATTCA
133301 AAACGCCACTAAATTTATATATTTAACGGCATTCATAAATT-A
1 AAACGCCACTAAATTTA-A-ATTTAACGGCATTCAT-AATTCA
*
133343 AAATGCCACTAAATATTCAAATTTA
1 AAACGCCACTAAAT-TT-AAATTTA
133368 GTGACATTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
40 1 0.02
41 1 0.02
42 48 0.84
43 6 0.11
44 1 0.02
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.34
Consensus pattern (40 bp):
AAACGCCACTAAATTTAAATTTAACGGCATTCATAATTCA
Found at i:133399 original size:43 final size:43
Alignment explanation
Indices: 133350--133453 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
133340 TTAAAATGCC
*
133350 ACTAAATATTCAAATTTAGTGACATTTTCGATG-TATAAACGCT
1 ACTAAATATTCAAATTTAGTGACATTTT-GAAGCTATAAACGCT
* * * * *
133393 GCTAAATACAT-AAATTTAGTGACGTTTTTAAGCTATAAATGCT
1 ACTAAATA-TTCAAATTTAGTGACATTTTGAAGCTATAAACGCT
133436 ACTAAATATTCAAATTTA
1 ACTAAATATTCAAATTTA
133454 ATGGTGTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
42 3 0.06
43 46 0.92
44 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (43 bp):
ACTAAATATTCAAATTTAGTGACATTTTGAAGCTATAAACGCT
Found at i:133747 original size:2 final size:2
Alignment explanation
Indices: 133740--133770 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
133730 TAGAAGGAAT
133740 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
133771 CCTTCATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:133895 original size:21 final size:21
Alignment explanation
Indices: 133858--133909 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
133848 ATTATTTAAT
133858 TTTTAAATAAGTTTTTTATTA
1 TTTTAAATAAGTTTTTTATTA
133879 TATTTAAATAA-TTTTTTATTA
1 T-TTTAAATAAGTTTTTTATTA
*
133900 TTTCAAATAA
1 TTTTAAATAA
133910 AATATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 8 0.28
21 12 0.41
22 9 0.31
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTAAATAAGTTTTTTATTA
Found at i:133976 original size:29 final size:30
Alignment explanation
Indices: 133925--133985 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
133915 TAATTTACAC
** *
133925 TAAAAGTTTATTTAGGTATAAGTTAAAAGT
1 TAAAAGTTTATTTAAATACAAGTTAAAAGT
*
133955 TAAAA-TTTATTTAAATACAAGTTAAATGT
1 TAAAAGTTTATTTAAATACAAGTTAAAAGT
133984 TA
1 TA
133986 CTGTTTATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 22 0.81
30 5 0.19
ACGTcount: A:0.46, C:0.02, G:0.11, T:0.41
Consensus pattern (30 bp):
TAAAAGTTTATTTAAATACAAGTTAAAAGT
Found at i:136045 original size:19 final size:19
Alignment explanation
Indices: 136017--136060 Score: 60
Period size: 16 Copynumber: 2.5 Consensus size: 19
136007 ATACATAATA
136017 AGAA-ACATTATTATTACT
1 AGAATACATTATTATTACT
136035 AGAATAC---ATTATTACT
1 AGAATACATTATTATTACT
136051 AGAATACATT
1 AGAATACATT
136061 GCAAATACGG
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
16 16 0.73
18 4 0.18
19 2 0.09
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (19 bp):
AGAATACATTATTATTACT
Found at i:136047 original size:16 final size:16
Alignment explanation
Indices: 136026--136060 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
136016 AAGAAACATT
136026 ATTATTACTAGAATAC
1 ATTATTACTAGAATAC
136042 ATTATTACTAGAATAC
1 ATTATTACTAGAATAC
136058 ATT
1 ATT
136061 GCAAATACGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTATTACTAGAATAC
Done.