Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold266
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 372371
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
File 1 of 3
Found at i:266 original size:24 final size:23
Alignment explanation
Indices: 237--295 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 23
227 GTTCGATTTG
237 AATTATTATTTGAATAATAAAATA
1 AATTATTATTTGAAT-ATAAAATA
* *
261 AATTATAAATTTTAATATAAAATA
1 AATTAT-TATTTGAATATAAAATA
*
285 AATTTTTATTT
1 AATTATTATTT
296 TTTATTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 4 0.13
24 19 0.63
25 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
AATTATTATTTGAATATAAAATA
Found at i:298 original size:25 final size:25
Alignment explanation
Indices: 239--299 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
229 TCGATTTGAA
*
239 TTATTATTTGAATAATAAAATAAATT
1 TTATT-TTTTAATAATAAAATAAATT
* **
265 ATAAATTTTAAT-ATAAAATAAATTT
1 TTATTTTTTAATAATAAAATAAA-TT
290 TTATTTTTTA
1 TTATTTTTTA
300 TTATTTTAAA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
24 10 0.37
25 15 0.56
26 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TTATTTTTTAATAATAAAATAAATT
Found at i:2521 original size:21 final size:21
Alignment explanation
Indices: 2497--2536 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2487 AATCTACAAT
**
2497 TTTTAAAAATCAAATCAAAAG
1 TTTTAAAAAAAAAATCAAAAG
2518 TTTTAAAAAAAAAATCAAA
1 TTTTAAAAAAAAAATCAAA
2537 TCAGAATCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.62, C:0.07, G:0.03, T:0.28
Consensus pattern (21 bp):
TTTTAAAAAAAAAATCAAAAG
Found at i:7142 original size:3 final size:3
Alignment explanation
Indices: 7134--7159 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7124 ACGACACTTG
7134 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7160 AAAATTTGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7577 original size:24 final size:25
Alignment explanation
Indices: 7523--7579 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
7513 TAAAATCTAG
7523 AATTTAAAAAATTAAATCAAAATTT
1 AATTTAAAAAATTAAATCAAAATTT
**
7548 TTTTTAAAAAATTAAATCAAAA-TT
1 AATTTAAAAAATTAAATCAAAATTT
7572 AATTTAAA
1 AATTTAAA
7580 TTTAAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 8 0.29
25 20 0.71
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.39
Consensus pattern (25 bp):
AATTTAAAAAATTAAATCAAAATTT
Found at i:9191 original size:13 final size:13
Alignment explanation
Indices: 9175--9204 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
9165 GGGATACAAG
9175 AGAGAGATGCTTA
1 AGAGAGATGCTTA
9188 AGAGAGATGCTTA
1 AGAGAGATGCTTA
9201 AGAG
1 AGAG
9205 GGATACAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.20
Consensus pattern (13 bp):
AGAGAGATGCTTA
Found at i:9302 original size:24 final size:24
Alignment explanation
Indices: 9274--9319 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9264 AAAAAAAATT
9274 AGCCACCAATTTTGACAAACAACA
1 AGCCACCAATTTTGACAAACAACA
* *
9298 AGCCACCATTTTTTACAAACAA
1 AGCCACCAATTTTGACAAACAA
9320 AAATAACCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.28, G:0.07, T:0.22
Consensus pattern (24 bp):
AGCCACCAATTTTGACAAACAACA
Found at i:9355 original size:28 final size:28
Alignment explanation
Indices: 9324--9378 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
9314 AAACAAAAAT
* *
9324 AACCACCATATTTGATAAATATAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
9352 AACCACCATATTTGACAAATACAAAGG
1 AACCACCATATTTGACAAATACAAAGG
9379 GTGATATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.49, C:0.18, G:0.11, T:0.22
Consensus pattern (28 bp):
AACCACCATATTTGACAAATACAAAGGA
Found at i:9422 original size:19 final size:19
Alignment explanation
Indices: 9398--9443 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
9388 GTTGACTAGA
*
9398 GATAGCCACCCACCATAAG
1 GATAGCCACACACCATAAG
9417 GATAGCCACACACCATAAG
1 GATAGCCACACACCATAAG
9436 GATAGCCA
1 GATAGCCA
9444 TCTACAAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.39, C:0.33, G:0.17, T:0.11
Consensus pattern (19 bp):
GATAGCCACACACCATAAG
Found at i:13943 original size:24 final size:24
Alignment explanation
Indices: 13907--13952 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
13897 AATAAAAAAT
* *
13907 AGCCACTAATTTTGATAAACAACA
1 AGCCACCAATTTTGAGAAACAACA
* *
13931 AGCCACCATTTTTTAGAAACAA
1 AGCCACCAATTTTGAGAAACAA
13953 AAATAATCAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (24 bp):
AGCCACCAATTTTGAGAAACAACA
Found at i:15300 original size:34 final size:34
Alignment explanation
Indices: 15261--15488 Score: 252
Period size: 34 Copynumber: 7.4 Consensus size: 34
15251 ATATACATGT
15261 TAACACACCTAACATTCTCACCAAATACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
15295 TAACACACCTAACATTCTCACC-TA-ACA-CACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
15326 T---A-A-C--A--TTCTCACCAAACACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
15351 TAACACACCTAACATTCTCACCAAATACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
15385 TAACACACCTAACATTCTCACC-TA-ACA-CACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
15416 T---A-A-C--A--TTCTCACCAAACACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
15441 TAACACACCTAACATTCTCACCAAATACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
15475 TAACACACCTAACA
1 TAACACACCTAACA
15489 AAGAAATTAA
Statistics
Matches: 164, Mismatches: 6, Indels: 48
0.75 0.03 0.22
Matches are distributed among these distances:
22 16 0.10
23 2 0.01
24 8 0.05
25 10 0.06
26 2 0.01
27 2 0.01
28 4 0.02
29 2 0.01
30 2 0.01
31 10 0.06
32 8 0.05
33 2 0.01
34 96 0.59
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (34 bp):
TAACACACCTAACATTCTCACCAAATACATCACC
Found at i:15318 original size:22 final size:22
Alignment explanation
Indices: 15290--15435 Score: 151
Period size: 22 Copynumber: 6.5 Consensus size: 22
15280 ACCAAATACA
15290 TCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTC
15312 TCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTC
*
15334 TCACCAAACACATCACCTAACA---
1 TCACC-TA-ACA-CACCTAACATTC
*
15356 -CACCTAACATTCTCACC-AA-ATAC
1 TCACCTAACA----CACCTAACATTC
15379 ATCACCTAACACACCTAACATTC
1 -TCACCTAACACACCTAACATTC
15402 TCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTC
*
15424 TCACCAAACACA
1 TCACCTAACACA
15436 TCACCTAACA
Statistics
Matches: 107, Mismatches: 4, Indels: 26
0.78 0.03 0.19
Matches are distributed among these distances:
19 3 0.03
20 2 0.02
21 10 0.09
22 67 0.63
23 4 0.04
24 3 0.03
25 18 0.17
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (22 bp):
TCACCTAACACACCTAACATTC
Found at i:15347 original size:56 final size:56
Alignment explanation
Indices: 15262--15435 Score: 241
Period size: 56 Copynumber: 3.1 Consensus size: 56
15252 TATACATGTT
* *
15262 AACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCT
1 AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACCA
15318 AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACCAA
1 AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACC-A
*
15375 ATACATCACCTAACA----CACCTAACATTC-TCACCTAACACACCTAACATTCTCACCA
1 A-ACA-CACCTAACATTCTCACCAAACA--CATCACCTAACACACCTAACATTCTCACCA
15430 AACACA
1 AACACA
15436 TCACCTAACA
Statistics
Matches: 110, Mismatches: 3, Indels: 13
0.87 0.02 0.10
Matches are distributed among these distances:
53 2 0.02
54 3 0.03
55 10 0.09
56 81 0.74
57 2 0.02
58 3 0.03
59 9 0.08
ACGTcount: A:0.41, C:0.40, G:0.00, T:0.20
Consensus pattern (56 bp):
AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACCA
Found at i:15414 original size:90 final size:90
Alignment explanation
Indices: 15261--15488 Score: 456
Period size: 90 Copynumber: 2.5 Consensus size: 90
15251 ATATACATGT
15261 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
1 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
15326 TAACATTCTCACCAAACACATCACC
66 TAACATTCTCACCAAACACATCACC
15351 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
1 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
15416 TAACATTCTCACCAAACACATCACC
66 TAACATTCTCACCAAACACATCACC
15441 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACA
1 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACA
15489 AAGAAATTAA
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 138 1.00
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (90 bp):
TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
TAACATTCTCACCAAACACATCACC
Found at i:15437 original size:56 final size:55
Alignment explanation
Indices: 15290--15462 Score: 226
Period size: 56 Copynumber: 3.1 Consensus size: 55
15280 ACCAAATACA
* * * **
15290 TCACCTAACACACCTAACATTCTCACC-TAACA-CACCTAACATTCTCACCAA-ACAC
1 TCACCTAACACACCTAACATTCTCACCAAAACATCACCTAACA--CAC-CTAACATTC
15345 ATCACCTAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTC
1 -TCACCTAACACACCTAACATTCTCACCAAA-ACATCACCTAACACACCTAACATTC
15402 TCACCTAACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTCTCACCAAA-ACATCACCTAACACACCTAACATTC
15458 TCACC
1 TCACC
15463 AAATACATCA
Statistics
Matches: 107, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
56 90 0.84
57 5 0.05
58 3 0.03
59 9 0.08
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (55 bp):
TCACCTAACACACCTAACATTCTCACCAAAACATCACCTAACACACCTAACATTC
Found at i:20195 original size:34 final size:34
Alignment explanation
Indices: 20156--20383 Score: 252
Period size: 34 Copynumber: 7.4 Consensus size: 34
20146 ATATACATGT
20156 TAACACACCTAACATTCTCACCAAATACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
20190 TAACACACCTAACATTCTCACC-TA-ACA-CACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
20221 T---A-A-C--A--TTCTCACCAAACACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
20246 TAACACACCTAACATTCTCACCAAATACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
20280 TAACACACCTAACATTCTCACC-TA-ACA-CACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
*
20311 T---A-A-C--A--TTCTCACCAAACACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
20336 TAACACACCTAACATTCTCACCAAATACATCACC
1 TAACACACCTAACATTCTCACCAAATACATCACC
20370 TAACACACCTAACA
1 TAACACACCTAACA
20384 AAGAAATTAA
Statistics
Matches: 164, Mismatches: 6, Indels: 48
0.75 0.03 0.22
Matches are distributed among these distances:
22 16 0.10
23 2 0.01
24 8 0.05
25 10 0.06
26 2 0.01
27 2 0.01
28 4 0.02
29 2 0.01
30 2 0.01
31 10 0.06
32 8 0.05
33 2 0.01
34 96 0.59
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (34 bp):
TAACACACCTAACATTCTCACCAAATACATCACC
Found at i:20213 original size:22 final size:22
Alignment explanation
Indices: 20185--20330 Score: 151
Period size: 22 Copynumber: 6.5 Consensus size: 22
20175 ACCAAATACA
20185 TCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTC
20207 TCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTC
*
20229 TCACCAAACACATCACCTAACA---
1 TCACC-TA-ACA-CACCTAACATTC
*
20251 -CACCTAACATTCTCACC-AA-ATAC
1 TCACCTAACA----CACCTAACATTC
20274 ATCACCTAACACACCTAACATTC
1 -TCACCTAACACACCTAACATTC
20297 TCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTC
*
20319 TCACCAAACACA
1 TCACCTAACACA
20331 TCACCTAACA
Statistics
Matches: 107, Mismatches: 4, Indels: 26
0.78 0.03 0.19
Matches are distributed among these distances:
19 3 0.03
20 2 0.02
21 10 0.09
22 67 0.63
23 4 0.04
24 3 0.03
25 18 0.17
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (22 bp):
TCACCTAACACACCTAACATTC
Found at i:20242 original size:56 final size:56
Alignment explanation
Indices: 20157--20330 Score: 241
Period size: 56 Copynumber: 3.1 Consensus size: 56
20147 TATACATGTT
* *
20157 AACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCT
1 AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACCA
20213 AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACCAA
1 AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACC-A
*
20270 ATACATCACCTAACA----CACCTAACATTC-TCACCTAACACACCTAACATTCTCACCA
1 A-ACA-CACCTAACATTCTCACCAAACA--CATCACCTAACACACCTAACATTCTCACCA
20325 AACACA
1 AACACA
20331 TCACCTAACA
Statistics
Matches: 110, Mismatches: 3, Indels: 13
0.87 0.02 0.10
Matches are distributed among these distances:
53 2 0.02
54 3 0.03
55 10 0.09
56 81 0.74
57 2 0.02
58 3 0.03
59 9 0.08
ACGTcount: A:0.41, C:0.40, G:0.00, T:0.20
Consensus pattern (56 bp):
AACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTCTCACCA
Found at i:20309 original size:90 final size:90
Alignment explanation
Indices: 20156--20383 Score: 456
Period size: 90 Copynumber: 2.5 Consensus size: 90
20146 ATATACATGT
20156 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
1 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
20221 TAACATTCTCACCAAACACATCACC
66 TAACATTCTCACCAAACACATCACC
20246 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
1 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
20311 TAACATTCTCACCAAACACATCACC
66 TAACATTCTCACCAAACACATCACC
20336 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACA
1 TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACA
20384 AAGAAATTAA
Statistics
Matches: 138, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 138 1.00
ACGTcount: A:0.41, C:0.39, G:0.00, T:0.20
Consensus pattern (90 bp):
TAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTCTCACCTAACACACC
TAACATTCTCACCAAACACATCACC
Found at i:20332 original size:56 final size:55
Alignment explanation
Indices: 20185--20357 Score: 226
Period size: 56 Copynumber: 3.1 Consensus size: 55
20175 ACCAAATACA
* * * **
20185 TCACCTAACACACCTAACATTCTCACC-TAACA-CACCTAACATTCTCACCAA-ACAC
1 TCACCTAACACACCTAACATTCTCACCAAAACATCACCTAACA--CAC-CTAACATTC
20240 ATCACCTAACACACCTAACATTCTCACCAAATACATCACCTAACACACCTAACATTC
1 -TCACCTAACACACCTAACATTCTCACCAAA-ACATCACCTAACACACCTAACATTC
20297 TCACCTAACACACCTAACATTCTCACCAAACACATCACCTAACACACCTAACATTC
1 TCACCTAACACACCTAACATTCTCACCAAA-ACATCACCTAACACACCTAACATTC
20353 TCACC
1 TCACC
20358 AAATACATCA
Statistics
Matches: 107, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
56 90 0.84
57 5 0.05
58 3 0.03
59 9 0.08
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (55 bp):
TCACCTAACACACCTAACATTCTCACCAAAACATCACCTAACACACCTAACATTC
Found at i:21688 original size:7 final size:8
Alignment explanation
Indices: 21674--21703 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
21664 TCCATTATAA
21674 CTTTTTTT
1 CTTTTTTT
21682 CTTTTTTTT
1 C-TTTTTTT
21691 CTTTTTTT
1 CTTTTTTT
21699 CTTTT
1 CTTTT
21704 GAGATTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
CTTTTTTT
Found at i:21689 original size:9 final size:9
Alignment explanation
Indices: 21675--21703 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
21665 CCATTATAAC
21675 TTTTTTTCT
1 TTTTTTTCT
21684 TTTTTTTC-
1 TTTTTTTCT
21692 TTTTTTTCT
1 TTTTTTTCT
21701 TTT
1 TTT
21704 GAGATTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:22956 original size:22 final size:21
Alignment explanation
Indices: 22914--22957 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
22904 GTTGGTTAAG
**
22914 TTTTTTTTTTCTTTATTAGAT
1 TTTTTTTTTTCTTTAAGAGAT
22935 TTTTTTTTTTCATTTAAGAGAT
1 TTTTTTTTTTC-TTTAAGAGAT
22957 T
1 T
22958 CCAAGATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.18, C:0.05, G:0.07, T:0.70
Consensus pattern (21 bp):
TTTTTTTTTTCTTTAAGAGAT
Found at i:34048 original size:41 final size:41
Alignment explanation
Indices: 33984--34065 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
33974 CAAAGACAAT
* *
33984 GGAAATCAATTGGAGTAACTTTACA-AGTGATGGTATTTGAA
1 GGAAATCAATTGAAGTAACTTTACATA-TGATAGTATTTGAA
*
34025 GGAAATCAATT-AACGTAAGTTTACATATGATAGTATTTGAA
1 GGAAATCAATTGAA-GTAACTTTACATATGATAGTATTTGAA
34066 TATCATTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 1 0.03
41 34 0.94
42 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (41 bp):
GGAAATCAATTGAAGTAACTTTACATATGATAGTATTTGAA
Found at i:35038 original size:4 final size:4
Alignment explanation
Indices: 35031--35058 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
35021 GTATTATCTC
35031 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
35059 GTGAACCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:40351 original size:2 final size:2
Alignment explanation
Indices: 40344--40368 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
40334 AACAAGTTCA
40344 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
40369 CATTAGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:40425 original size:106 final size:104
Alignment explanation
Indices: 40309--40509 Score: 246
Period size: 106 Copynumber: 1.9 Consensus size: 104
40299 TTGAAAATAA
* * * *
40309 ATTTTCAACTTCATAGACATGATTCAACAAGTTCAATA-TAT-ATATATATATA-TATATATACA
1 ATTTTAAACTTCAAAGACATGATTCAACAAGTTCAATAGT-TCAAATA-AT-TAGT-TA-AAACA
* *
40371 TTAGAAATTTTAGTAGTACTAGGATTGGCCTAATCCATCTCTAG
61 TTACAAATTTTAGTAGTACTAGGACTGGCCTAATCCATCTCTAG
* * * *
40415 ATTTTAAACTTCAAAGACCTGATTGAATAAGTTCAATAGTTCAAATAATTAGTTAAAATATTACA
1 ATTTTAAACTTCAAAGACATGATTCAACAAGTTCAATAGTTCAAATAATTAGTTAAAACATTACA
40480 AATTTTAGTAGTACTAGGACTGGCCTAATC
66 AATTTTAGTAGTACTAGGACTGGCCTAATC
40510 ACTATGTAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
104 36 0.44
105 4 0.05
106 37 0.45
107 5 0.06
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.36
Consensus pattern (104 bp):
ATTTTAAACTTCAAAGACATGATTCAACAAGTTCAATAGTTCAAATAATTAGTTAAAACATTACA
AATTTTAGTAGTACTAGGACTGGCCTAATCCATCTCTAG
Found at i:42542 original size:25 final size:25
Alignment explanation
Indices: 42490--42542 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
42480 AAAAAATTTA
* *
42490 TATTATATTTATTATGAATATCTTT
1 TATTATATTTATTATGAATAACTGT
*
42515 TATTATATTTCATTA-GAATAAGTGT
1 TATTATATTT-ATTATGAATAACTGT
42540 TAT
1 TAT
42543 CTTGTTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.55
Consensus pattern (25 bp):
TATTATATTTATTATGAATAACTGT
Found at i:50520 original size:27 final size:27
Alignment explanation
Indices: 50478--50556 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
50468 TGGCATTCCT
* *
50478 TTTTAAGTCCATAACTCCATGGCAACC
1 TTTTAAGTCCACAACTCCGTGGCAACC
50505 TTTTAAGTCCACAACTCCGTGGCAACC
1 TTTTAAGTCCACAACTCCGTGGCAACC
* *
50532 TTATAAAGACCACAACTCCGTGGCA
1 TT-TTAAGTCCACAACTCCGTGGCA
50557 GCCCTTTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 27 0.57
28 20 0.43
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCAACC
Found at i:50550 original size:28 final size:27
Alignment explanation
Indices: 50490--50754 Score: 120
Period size: 28 Copynumber: 9.4 Consensus size: 27
50480 TTAAGTCCAT
* * *
50490 AACTCCATGGCAACCTTTTAAGTCCAC
1 AACTCCGTGGCAACCTTTAAAGACCAC
50517 AACTCCGTGGCAACCTTATAAAGACCAC
1 AACTCCGTGGCAACCTT-TAAAGACCAC
*
50545 AACTCCGTGGCAGCCCTTTTTAAAGACCAC
1 AACTCCGTGGCA-ACC--TTTAAAGACCAC
* *** *
50575 AAGTCAAAGGCATCCTTTCAAAGACCAC
1 AACTCCGTGGCAACCTTT-AAAGACCAC
* * *
50603 AAGTCAG-GG-ACACCTTTTCAAAGACCAA
1 AACTCCGTGGCA-ACC-TTT-AAAGACCAC
* * * *
50631 AAGTCAGTGGCACCCTTTCAAAGCCCAC
1 AACTCCGTGGCAACCTTT-AAAGACCAC
* ** * *
50659 AAGTTGGTGGCATCCTTTCAAAGCCCAC
1 AACTCCGTGGCAACCTTT-AAAGACCAC
* * * *
50687 AAATCAGTGGCATCCTTTCAAAGCCCAC
1 AACTCCGTGGCAACCTTT-AAAGACCAC
* * * * *
50715 AAGTCAGTGGCATCTTTTCAAAGCCCAC
1 AACTCCGTGGCAACCTTT-AAAGACCAC
* *
50743 AAGTCAGTGGCA
1 AACTCCGTGGCA
50755 TCTTTTCAAC
Statistics
Matches: 206, Mismatches: 23, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.00
27 23 0.11
28 153 0.74
29 8 0.04
30 19 0.09
31 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (27 bp):
AACTCCGTGGCAACCTTTAAAGACCAC
Found at i:50635 original size:56 final size:56
Alignment explanation
Indices: 50497--55730 Score: 4812
Period size: 56 Copynumber: 91.9 Consensus size: 56
50487 CATAACTCCA
* * * * * * *
50497 TGGCAACCTTTT--AAGTCCACAACTCCGTGGCAACCTTAT-AAAGACCACAACTCCG
1 TGGC-ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAG
* * ** *
50552 TGGCAGCCCTTTTTAAAGACCACAAGTCAAAGGCATCCTTTCAAAGACCACAAGTCAG
1 TGGCA--CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * **
50610 -GGACACCTTTTCAAAGACCAAAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTGG
1 TGG-CACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
50666 TGGCATCC-TTTCAAAGCCCACAAATCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
50722 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAACAAGGCTTCAAGCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-A-AA-G---C---CCACAAGTCAG
*
50787 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
50843 TGGCA-CTCTTT-AAAGCTCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
50898 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAATCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
50954 TGCCTAGCCAAGGTCCTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAG
1 TGGC-A-CC----T--TTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCAC-A---AG
51018 TGGCATG
53 T--CA-G
*
51025 TCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 T--G--GCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
51085 TGGCATCTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCCAAAGCCCACAAGTCAA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAG
* * * * * *
51142 TGGTACCCTTTT-AAAGCCCACAAATTACTGGCATCCTTTCAAAGCCCACAAGTTAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** *
51198 TGGCTTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGGCATTTCAAAGTA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAA-G----TC-----A
51263 G
56 G
* * *
51264 TGGCATCC-TTTCAAAGCCCACAAGTCAATGGCAT-CTCTTCAAAAACCCACAAGTCAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
51321 TGGCATCTTTTCAAAGCCCACAAGTCAGTAGCACCCTTT-AAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
51376 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
51432 TGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGT
1 TGGCACCT-TTTCAAAGCCCAC-A---AGT--CA-GT--G--GCATCCTTTCAAAGCCCACAAGT
51496 CAG
54 CAG
* * *
51499 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-ATCTTCAAAAGCTCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * *
51556 TGGCA-TTTTTCCAAAGCTCACAAGTCAATGGTACCCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTT-CAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
51612 TGGCATCC-TTTCAAAGCCCATAAGTTAATGGCTTCTTTTCAAA-CTCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC-CCACAAGTCAG
* * *
51668 TGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
51724 TGGCATCTCTTCAAAAACCCACAAGTCAATGGAATCTTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
51781 TGGCACCCTTT-AAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
51836 TGACATCTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCAC-A---AGT--CA-G
* *
51899 TCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 T--G--GCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
51959 TGGCATCTCTTCAAAAGCTCACAAGTTAGTGCCAT-TTTTCCAAAGCCCACAAGTCAA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAG
* * * *
52016 TGGTACCCTTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
52072 TCGCTTCC-TTTCAAAGCCCACAAGGT-AGTGGCACCCTTTCAAAGCCCACAAGTAAG
1 TGGC-ACCTTTTCAAAGCCCACAA-GTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
52128 TGGCATCC-TTTCGAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
52184 TGGCATCTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * *
52240 TGGCATCC-TTTCAAAACCCACAAGTCAGTGGCATCTTTTCGAAA-ACCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * *
52296 TGGCACCCTTTCCAAGCCTACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
52352 TGGCATCTCTTCAAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
52410 TGGCATCATTTCAAAGCCCACAAGTCAGCGGCACCCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * **
52466 TGGCATCC-TTTCAAATCACACAAGTTAGTGGCAT-CTCTTCAAAAGAACACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * *
52523 TGGCATCTCTTCAAAAGACCC-TAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAG-CCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
52580 TGGCATCTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
52636 TGGCATCC-TTTCAACGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
52692 TGGCATCC-TTTCAAAACTCACAAGTCAGTGGTATCCTTTCAACGCCCACAGGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* ** * *
52748 TGGCATCTTTTCAAAGCAAACAAGTCAATGGCATCTTTTCAAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * * * * * *
52805 TGGCATCTTTTCAAAGCCCATAAATGAGTGGCACCCTTTCAAAACCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
52861 TGACATCTTTTCAAAACACACAAGTTAGTGGCAT-CTCTTCAAAAGACCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * *
52918 TGGTATCTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
52975 TGGCATCTTTTCAAAGCCCACAAGTCAGTGACACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
53031 TGGCATCC-TTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
53087 TGGCATCTCTTTAAAAACCCACAAGTCAATGGCATCTCTTTAAAAACCCACAAGTCAA
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * * * * *
53145 TGGCATCTTTTTAAAACCCACAAGTCAGTGACACCCTTT-AAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
53200 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGACCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
53257 TGGCATCTCTTTAAAAGCCCACAAGT-ACTGGCAACTTTTCAAAGCCCACAAGTCAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
53313 TGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*** * * * *
53369 TAATACCCTTTCAAAGCCCACAAGTTAGTGGTATCCTTTTAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
53425 TGGCATCTTTTCAAAGCCCACAAGTCGGTGGTA-CCTTTTCAATGCCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
*
53481 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCTCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
53537 TGGCATCTCTTCAAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
53594 TGGCACCTTTTCAAAGCCTACAAGTTAGTAGCATCCTTTGAAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * * *
53650 TTGCATCTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCTAAGGCCCACAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * * * *
53707 TGGTACCCTTTT-AAATCCCATAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * * *
53763 TGGCTTCTTTTCAAAGCCCATAAGTAAGTGGCACCCTTTCAAAGCCCACAAGTAAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
53819 TGGCA-TTCTTTCAAAGTCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
53875 TGGCATCTTTTCAAAGCCCACAAGTTAGTAGCA-CTCTATGAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* ** * *
53931 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTTGAAGACCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
53987 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCATCTTTTCGAAA-ACCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * *
54043 TGGCACCCTTTCAAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * ** *
54099 TGGCATCTCTTCAAAAGCCCATAAGTCAGTGGCATATTTTCAAAGCCCACAAGTCAA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
54156 TGGCACCCTTTT-AAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * ** *
54212 TGGCATCC-TTTCAAAACCCACAGGTTAGTGGCAT-CTCTTCAAAAGAACACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * *
54269 TGGCATCTCTTCAAAAGACCATAAGTTAGTGGTATCCTTTCAAAACCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * * * *
54326 TGGCATCTTATCAAAGCTCATAAGTTAATGGCTTCTTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
54382 TGGCATCC-TTTCAAAGCCCACAAGTTAGTGACACCCTTTCAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
54438 TGGCATCC-TTTCAAAACTCACAAGTCAGTGGTATCATTACAAAGCGCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
54494 TGGCAACTTTTCAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAACTCATAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * *
54551 TGGCATCTTTTCAAAGCCCATAAATGAATGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
54607 TGACATCTTTTCAAAACCCACAAGTTAGTGGCAT-CTCTTCAAAAGACCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
54664 TGGCATCTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
54721 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATGCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
54777 TGGCATCC-TTTCAAAGCCCATAAGTGAGTGGCATCCTTTCAAAGCCCACAAGTCTA-
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTC-AG
* * * * *
54833 TGGCATCTCTTCAAAAG-CCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
54889 TGGCACCCTTT-AAAACCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
54944 TGACATCTCTTCGAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAAGT-AA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * * *
55001 TGGTAACTTTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * ** * *
55057 TGGCATCTTTTTAAAGCCCACAAGTTAGTAACACCCTTTCAAAG-CCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
55112 TGGTATCCTTTT-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGGCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
55168 TGGCACCTTTTCAATGCCCATAAGTTAGTGGCATCCTTTCAAAGCCCATAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
55224 TGGCATCTTTTCAAAGCTCACAAGTCAGTGGCAT-CTCTTCAAAAGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
** * * * *
55281 TGGCATATTTTCAAAGCCCACAAGTCAGTGCCA-CATTTTCAAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
*
55337 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGACCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * *
55394 TGGCATCTCTTCAAAAGACCACAAGTCAGTGGCATCTTTTTAAAGCCCACATGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * *
55451 TGGCATATTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
55507 TGGCA-TTCTTTCAAAGCCCAAAAGTCAGCGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
55563 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCATACCATTTCAAAGCCTACACAAATCAA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCAT-CC-TTTCAAAGCC--CACAAGTCAG
* * * * * *
55623 TGGCACCCTTCCAAAGCCCATAAGTCAGTGGCACCCTTTTAAAGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* ** * * *
55679 TGGTACCCCTTAAAAGCCCATAAGTCAGTGGCATCCCCTTTTAAAGCCCACA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCAT--CCTTTCAAAGCCCACA
55731 CAAGTCGGTG
Statistics
Matches: 4311, Mismatches: 648, Indels: 437
0.80 0.12 0.08
Matches are distributed among these distances:
54 8 0.00
55 366 0.08
56 2388 0.55
57 889 0.21
58 290 0.07
59 15 0.00
60 49 0.01
61 7 0.00
62 9 0.00
63 16 0.00
64 39 0.01
65 52 0.01
66 37 0.01
67 132 0.03
68 4 0.00
69 1 0.00
70 2 0.00
71 2 0.00
73 3 0.00
74 1 0.00
75 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (56 bp):
TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
Found at i:50678 original size:84 final size:84
Alignment explanation
Indices: 50583--55730 Score: 5009
Period size: 84 Copynumber: 60.2 Consensus size: 84
50573 ACAAGTCAAA
* * * *
50583 GGCATCCTTTCAAAGACCACAAGTCAG-GGACACCTTTTCAAAGACCAAAAGTCAGTGGCACCCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGG-CACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
*
50647 TTCAAAGCCCACAAGTTGGT
65 TTCAAAGCCCACAAGTTAGT
* *
50667 GGCATCCTTTCAAAGCCCACAAATCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
*
50731 TTCAAAGCCCACAAGTCAGT
65 TTCAAAGCCCACAAGTTAGT
* *
50751 GGCATCTTTTCAACAAGGCTTCAAGCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
1 GGCATCCTTTC-A-AA-G---C---CCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAG
* *
50815 TGGCATCTTTTCAAAGCCCACAAGTCAGT
56 TGGCATCCTTTCAAAGCCCACAAGTTAGT
* * * *
50844 GGCA-CTCTTT-AAAGCTCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTTAGTGGCATCT
1 GGCATC-CTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC
*
50906 TTTCAAAGCCCACAAGTCAGT
64 TTTCAAAGCCCACAAGTTAGT
* * * *
50927 GGCACCCTTTTAAAGCCCACAAATCAGTGCCTAGCCAAGGTCCTTTCAAAGCCCACAAGTCAGTG
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGC-A-CC----T--TTTCAAAGCCCACAAGTCAGTG
50992 GCA-CTCTTTCAAAGCCCACAAGTTAGT
58 GCATC-CTTTCAAAGCCCACAAGTTAGT
51019 GGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTC
1 -G---G-CA-T-----CCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTC
*
51083 AGTGGCAT-CTCTTCAAAAGCTCACAAGTTAGT
54 AGTGGCATCCT-TTC-AAAGCCCACAAGTTAGT
* * * * * *
51115 GGCAT-TTTTCCAAAGCCCACAAGTCAATGGTACCCTTTT-AAAGCCCACAAATTACTGGCATCC
1 GGCATCCTTT-CAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC
*
51178 TTTCAAAGCCCACAAGTTAAT
64 TTTCAAAGCCCACAAGTTAGT
* * *
51199 GGCTTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGGCATTTCAAAGTAG
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAA-G----TC-----AG
* *
51264 TGGCATCCTTTCAAAGCCCACAAGTCAAT
56 TGGCATCCTTTCAAAGCCCACAAGTTAGT
* * * * *
51293 GGCAT-CTCTTCAAAAACCCACAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAGTAGCACCC
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCC
*
51357 TTT-AAAGCCTACAAGTTAGT
64 TTTCAAAGCCCACAAGTTAGT
* *
51377 GGCATCCTTTCAAAGCCCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAGTGGCA-CTCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CT
51441 TTCAAAGCCCACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
51461 GGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTC
1 -G---G-CA-T-----CCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTC
* *
51525 AGTGGCAT-ATCTTCAAAAGCTCACAAGTTAGT
54 AGTGGCATCCT-TTC-AAAGCCCACAAGTTAGT
* * * * *
51557 GGCAT-TTTTCCAAAGCTCACAAGTCAATGGTACCCTTTT-AAAGCCCACAAGTTAGTGGCATCC
1 GGCATCCTTT-CAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* *
51620 TTTCAAAGCCCATAAGTTAAT
64 TTTCAAAGCCCACAAGTTAGT
* * * *
51641 GGCTTCTTTTCAAA-CTCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCT
1 GGCATCCTTTCAAAGC-CCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
51705 TTCAAAGCCCACAAGTCAAT
65 TTCAAAGCCCACAAGTTAGT
* * * * *
51725 GGCAT-CTCTTCAAAAACCCACAAGTCAATGGAATCTTTTCAAAGCCCACAAGTCAGTGGCACCC
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCC
*
51789 TTT-AAAGCCTACAAGTTAGT
64 TTTCAAAGCCCACAAGTTAGT
* *
51809 GGCATCCTTTCAAAGCCCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAGTGGCA-CTCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CT
51873 TTCAAAGCCCACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
*
51893 GGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCA
1 -G---G-CA-T-----CCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCA
*
51958 GTGGCAT-CTCTTCAAAAGCTCACAAGTTAGT
55 GTGGCATCCT-TTC-AAAGCCCACAAGTTAGT
* * * * *
51989 GCCAT-TTTTCCAAAGCCCACAAGTCAATGGTACCCTTTT-AAAGCCCACAAGTTAGTGGCATCC
1 GGCATCCTTT-CAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC
*
52052 TTTCAAAGCCCACAAGTTAAT
64 TTTCAAAGCCCACAAGTTAGT
* * * *
52073 CGCTTCCTTTCAAAGCCCACAAGGT-AGTGGCACCCTTTCAAAGCCCACAAGTAAGTGGCATCCT
1 GGCATCCTTTCAAAGCCCACAA-GTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
*
52137 TTCGAAGCCCACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
* *
52157 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTAGCA-CTCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CT
52221 TTCAAAGCCCACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
* * * * *
52241 GGCATCCTTTCAAAACCCACAAGTCAGTGGCATCTTTTCGAAA-ACCACAAGTTAGTGGCACCCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT
* * *
52305 TTCCAAGCCTACAAGTCAGT
65 TTCAAAGCCCACAAGTTAGT
* *
52325 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGCCCACAAGTCAGTGGCAT-CT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT
*
52389 CTTCAAAAGCCCACAAGTCAGT
65 -TTC-AAAGCCCACAAGTTAGT
* * *
52411 GGCATCATTTCAAAGCCCACAAGTCAGCGGCACCCTTTT-AAAGCCCACAAGTTAGTGGCATCCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
52475 TTCAAATCACACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
** * * *
52495 GGCAT-CTCTTCAAAAGAACACAAGTCAGTGGCATCTCTTCAAAAGACCC-TAAGTCAGTGGCAT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTC-AAAG-CCCACAAGTCAGTGGCAT
*
52558 CCTTTCAAAGCCCACAAGTCAGT
62 CCTTTCAAAGCCCACAAGTTAGT
* *
52581 GGCAT-CTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCT
1 GGCATCCTT-TCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
52645 TTCAACGCCCACAAGTCAGT
65 TTCAAAGCCCACAAGTTAGT
* * * * * *
52665 GGCACCCTTTTAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAACTCACAAGTCAGTGGTATCCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
52729 TTCAACGCCCACAGGTTAGT
65 TTCAAAGCCCACAAGTTAGT
* ** * * *
52749 GGCATCTTTTCAAAGCAAACAAGTCAATGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCATCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT
* * *
52814 TTCAAAGCCCATAAATGAGT
65 TTCAAAGCCCACAAGTTAGT
* * * * * * * * *
52834 GGCACCCTTTCAAAACCCATAAGTTAGTGACATCTTTTCAAAACACACAAGTTAGTGGCAT-CTC
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-
* *
52898 TTCAAAAGACCACAAGTCAGT
65 TTC-AAAGCCCACAAGTTAGT
* * * * *
52919 GGTAT-CTCTTCAAAAGACCACAGGTTAGTGGCATCC-TTTCAAAGCCCACAAGTTAGTGGCATC
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATC
* *
52982 TTTTCAAAGCCCACAAGTCAGT
63 CTTTCAAAGCCCACAAGTTAGT
* * * *
53004 GACACCCTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCATAAGTCAGTGGCATCCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
53068 TTCAAAGCCCACAAGTCAAT
65 TTCAAAGCCCACAAGTTAGT
* * * * * * * *
53088 GGCATCTCTTTAAAAACCCACAAGTCAATGGCATCTCTTTAAAAACCCACAAGTCAATGGCATCT
1 GGCATC-CTTTCAAAGCCCACAAGTCAGTGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
53153 TTTTAAAACCCACAAGTCAGT
64 TTTCAAAGCCCACAAGTTAGT
* * * *
53174 GACACCCTTT-AAAGCCTACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
*
53236 CTTCAAAAGACCACAAGTTAGT
65 -TTC-AAAGCCCACAAGTTAGT
* * * *
53258 GGCATCTCTTTAAAAGCCCACAAGT-ACTGGCAACTTTTCAAAGCCCACAAGTCAGTGGCACCCT
1 GGCATC-CTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
53322 TTCAAAGCCCACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
* * *** * * *
53342 GGCATCCTTTTAAAGCCCACAAGTTAGTAATACCCTTTCAAAGCCCACAAGTTAGTGGTATCCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
* *
53407 TTAAAGCCCACAAGTCAGT
66 TCAAAGCCCACAAGTTAGT
* * * * * *
53426 GGCATCTTTTCAAAGCCCACAAGTCGGTGGTACCTTTTCAATGCCCATAAGTTAGTGGCATCCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
*
53491 TCAAAGCCCACAAGTCAGT
66 TCAAAGCCCACAAGTTAGT
* * * *
53510 GGCATCCTTTCAAAGCTCACAAGTCAGTGGCATCTCTTCAAAAGCCCACAAGTTAGTGGCATCCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT
*
53575 TTCAAAGCCCACAAGTCAGT
65 TTCAAAGCCCACAAGTTAGT
* * * * * * *
53595 GGCA-CCTTTTCAAAGCCTACAAGTTAGTAGCATCC-TTTGAAAGCCTACAAGTTAGTTGCAT-C
1 GGCATCC-TTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC
*
53657 TCTTCAAAAGCTCACAAGTTAGT
64 T-TTC-AAAGCCCACAAGTTAGT
* * * * * * *
53680 GGCAT-TTTTCTAAGGCCCACAAGTTAGTGGTACCCTTTT-AAATCCCATAAGTTAGTGGCATCC
1 GGCATCCTTTC-AAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC
*
53743 TTTCAAAGCCCACAAGTTAAT
64 TTTCAAAGCCCACAAGTTAGT
* * * * * * *
53764 GGCTTCTTTTCAAAGCCCATAAGTAAGTGGCACCCTTTCAAAGCCCACAAGTAAGTGGCATTCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
*
53829 TCAAAGTCCACAAGTTAGT
66 TCAAAGCCCACAAGTTAGT
* * *
53848 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGTAGCA-CTCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CT
* *
53912 ATGAAAGCCCACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
* ** * * *
53932 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTTGAAGACCACAAGTTAGTGGCACCCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
* *
53997 TCAAAGCCCACAAGTCAAT
66 TCAAAGCCCACAAGTTAGT
* * * * * *
54016 GGCATCTTTTCGAAA-ACCACAAGTTAGTGGCACCCTTTCAAAGCCTACAAGTTAGTGGCATCCT
1 GGCATCCTTTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* *
54080 TTCAAAGCCTACAAGTCAGT
65 TTCAAAGCCCACAAGTTAGT
* ** * *
54100 GGCAT-CTCTTCAAAAGCCCATAAGTCAGTGGCATATTTTCAAAGCCCACAAGTCAATGGCACCC
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCC
* *
54164 TTTTAAAGCCCACAAGTCAGT
64 TTTCAAAGCCCACAAGTTAGT
* * * * * *
54185 GGCACCCTTTTAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAACCCACAGGTTAGTGGCAT-CT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
**
54248 CTTCAAAAGAACACAAGTTAGT
65 -TTC-AAAGCCCACAAGTTAGT
* * * * *
54270 GGCAT-CTCTTCAAAAGACCATAAGTTAGTGGTATCC-TTTCAAAACCCACAAGTCAGTGGCAT-
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATC
* * *
54332 CTTATCAAAGCTCATAAGTTAAT
63 CTT-TCAAAGCCCACAAGTTAGT
* * * * * *
54355 GGCTTCTTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTTAGTGACACCCT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
54419 TTCAAAGCCCACAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
* * * * * * * * * *
54439 GGCATCCTTTCAAAACTCACAAGTCAGTGGTATCATTACAAAGCGCACAAGTTAGTGGCAACTTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
*
54504 TCAAAGCCCACAAGTCAGT
66 TCAAAGCCCACAAGTTAGT
* * * * * * * * *
54523 GGCAT-CTCTTCAAAAACTCATAAGTCAGTGGCATCTTTTCAAAGCCCATAAATGAATGGCACCC
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCC
54587 TTTCAAAGCCCACAAGTTAGT
64 TTTCAAAGCCCACAAGTTAGT
* * * * * * *
54608 GACATCTTTTCAAAACCCACAAGTTAGTGGCATCTCTTCAAAAGACCACAAGTCAGTGGCAT-CT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT
* *
54672 CTTCAAAAGACCACAGGTTAGT
65 -TTC-AAAGCCCACAAGTTAGT
* * *
54694 GGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATGCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
54759 TCAAAGCCCACAAGTTAGT
66 TCAAAGCCCACAAGTTAGT
* *
54778 GGCATCCTTTCAAAGCCCATAAGTGAGTGGCATCC-TTTCAAAGCCCACAAGTCTA-TGGCAT-C
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTC-AGTGGCATCC
* * *
54840 TCTTCAAAAG-CCAAAAGTCAAT
64 T-TTC-AAAGCCCACAAGTTAGT
* * * * *
54862 GGCATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTT-AAAACCTACAAGTTAGTGGCATCCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
54926 TCAAAGCCCACAAGTTAGT
66 TCAAAGCCCACAAGTTAGT
* * * * * * * *
54945 GACAT-CTCTTCGAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAAGT-AATGGTAAC
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATC
* * *
55008 TTTTCAAAACCCACAAGTCAGT
63 CTTTCAAAGCCCACAAGTTAGT
* * * * * ** *
55030 GGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTTAAAGCCCACAAGTTAGTAACACCCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
55095 TCAAAG-CCACAAGTTAGT
66 TCAAAGCCCACAAGTTAGT
* * * * *
55113 GGTATCCTTTTAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGGCCACAAGTTAGTGGCA-CCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCC-T
* *
55177 TTCAATGCCCATAAGTTAGT
65 TTCAAAGCCCACAAGTTAGT
* * *
55197 GGCATCCTTTCAAAGCCCATAAGTCAGTGGCATCTTTTCAAAGCTCACAAGTCAGTGGCAT-CTC
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-
* *
55261 TTCAAAAGCCTACAAGTCAGT
65 TTC-AAAGCCCACAAGTTAGT
** * * * *
55282 GGCATATTTTCAAAGCCCACAAGTCAGTGCCACATTTTCAAAGCCTACAAGTTAGTGGCATCCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
*
55347 TCAAAGCCCACAAGTCAGT
66 TCAAAGCCCACAAGTTAGT
* * * *
55366 GGCAT-CTCTTCAAAAGACCACAAGTCAGTGGCATCTCTTCAAAAGACCACAAGTCAGTGGCATC
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATC
* * *
55430 TTTTTAAAGCCCACATGTTAGT
63 CTTTCAAAGCCCACAAGTTAGT
** * * * *
55452 GGCATATTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTAGTGGCATTCTT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
* * *
55517 TCAAAGCCCAAAAGTCAGC
66 TCAAAGCCCACAAGTTAGT
* * *
55536 GGCATCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCATACCA
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCAT-CC-
* * *
55601 TTTCAAAGCCTACACAAATCAAT
64 TTTCAAAGCC--CACAAGTTAGT
* * * * * * *
55624 GGCACCCTTCCAAAGCCCATAAGTCAGTGGCACCCTTTT-AAAGCCTACAAGTCAGTGGTACCCC
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
55688 TTAAAAGCCCATAAGTCAGT
65 TTCAAAGCCCACAAGTTAGT
*
55708 GGCATCCCCTTTTAAAGCCCACA
1 GGCAT--CCTTTCAAAGCCCACA
55731 CAAGTCGGTG
Statistics
Matches: 4266, Mismatches: 592, Indels: 410
0.81 0.11 0.08
Matches are distributed among these distances:
82 11 0.00
83 381 0.09
84 1945 0.46
85 994 0.23
86 419 0.10
87 13 0.00
88 55 0.01
89 11 0.00
90 10 0.00
91 8 0.00
92 47 0.01
93 75 0.02
94 42 0.01
95 177 0.04
96 50 0.01
97 2 0.00
102 3 0.00
103 23 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (84 bp):
GGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT
TCAAAGCCCACAAGTTAGT
Found at i:50755 original size:28 final size:28
Alignment explanation
Indices: 50560--51023 Score: 470
Period size: 28 Copynumber: 16.0 Consensus size: 28
50550 CGTGGCAGCC
* * **
50560 CTTTTTAAAGACCACAAGTCAAAGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
* * *
50588 CCTTTCAAAGACCACAAGTCAG-GGACAC
1 CTTTTCAAAGCCCACAAGTCAGTGG-CAT
* * *
50616 CTTTTCAAAGACCAAAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
* **
50644 CCTTTCAAAGCCCACAAGTTGGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
* *
50672 CCTTTCAAAGCCCACAAATCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
*
50700 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
50728 CTTTTCAAAGCCCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
*
50756 CTTTTCAACAAGGCTTCAAGCCACAAGTTAGTGGCAT
1 CTTTTC-A-AA-G---C---CCACAAGTCAGTGGCAT
*
50793 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
50821 CTTTTCAAAGCCCACAAGTCAGTGGCA-
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
* *
50848 CTCTTT-AAAGCTCACAAGTTAGTGGCAT
1 CT-TTTCAAAGCCCACAAGTCAGTGGCAT
* *
50876 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
*
50904 CTTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-T
*
50933 CTTTT-AAAGCCCACAAATCAGTGCCTAGCCAAGGT
1 CTTTTCAAAGCCCACAAGTCAGTG----G-C-A--T
*
50968 CCTTTCAAAGCCCACAAGTCAGTGGCA-
1 CTTTTCAAAGCCCACAAGTCAGTGGCAT
*
50995 CTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CT-TTTCAAAGCCCACAAGTCAGTGGCAT
51024 GTCAGTAGCA
Statistics
Matches: 376, Mismatches: 35, Indels: 49
0.82 0.08 0.11
Matches are distributed among these distances:
27 27 0.07
28 284 0.76
29 8 0.02
30 3 0.01
31 3 0.01
32 2 0.01
33 1 0.00
34 3 0.01
35 6 0.02
36 18 0.05
37 21 0.06
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (28 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:51040 original size:39 final size:39
Alignment explanation
Indices: 50985--51062 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
50975 AAGCCCACAA
* * *
50985 GTCAGTGGCACTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
51024 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
51063 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:51066 original size:28 final size:28
Alignment explanation
Indices: 51024--51249 Score: 258
Period size: 28 Copynumber: 8.0 Consensus size: 28
51014 TTAGTGGCAT
* *
51024 GTCAGTAGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
51052 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
51080 GTCAGTGGCAT-CTCTTCAAAAGCTCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
51109 GTTAGTGGCAT-TTTTCCAAAGCCCACAA
1 GTCAGTGGCATCCTTT-CAAAGCCCACAA
* * * *
51137 GTCAATGGTACCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * *
51165 ATTACTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
51193 GTTAATGGCTTCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
51221 GTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
51249 G
1 G
51250 GCATTTCAAA
Statistics
Matches: 167, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
27 2 0.01
28 140 0.84
29 25 0.15
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.24
Consensus pattern (28 bp):
GTCAGTGGCATCCTTTCAAAGCCCACAA
Found at i:51297 original size:28 final size:28
Alignment explanation
Indices: 51258--51465 Score: 262
Period size: 28 Copynumber: 7.5 Consensus size: 28
51248 AGGCATTTCA
51258 AAGT-AGTGGCATCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCAC
* *
51285 AAGTCAATGGCAT-CTCTTCAAAAACCCAC
1 AAGTCAGTGGCATCCT-TTC-AAAGCCCAC
* *
51314 AAGTCAATGGCATCTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCAC
* * *
51342 AAGTCAGTAGCACCCTTT-AAAGCCTAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCAC
*
51369 AAGTTAGTGGCATCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCAC
* *
51397 AAGTCAGTGACATCTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCAC
51425 AAGTCAGTGGCA-CTCTTTCAAAGCCCAC
1 AAGTCAGTGGCATC-CTTTCAAAGCCCAC
*
51453 AAGTTAGTGGCAT
1 AAGTCAGTGGCAT
51466 GTCAGTAGCA
Statistics
Matches: 155, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
27 30 0.19
28 100 0.65
29 24 0.15
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (28 bp):
AAGTCAGTGGCATCCTTTCAAAGCCCAC
Found at i:51482 original size:39 final size:39
Alignment explanation
Indices: 51427--51504 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
51417 AAGCCCACAA
* * *
51427 GTCAGTGGCACTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
51466 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
51505 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:51508 original size:28 final size:28
Alignment explanation
Indices: 51466--51897 Score: 489
Period size: 28 Copynumber: 15.4 Consensus size: 28
51456 TTAGTGGCAT
* *
51466 GTCAGTAGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
51494 GTCAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
51522 GTCAGTGGCAT-ATCTTCAAAAGCTCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * *
51551 GTTAGTGGCAT-TTTTCCAAAGCTCACAA
1 GTCAGTGGCATCCTTT-CAAAGCCCACAA
* * * *
51579 GTCAATGGTACCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
51607 GTTAGTGGCATCCTTTCAAAGCCCATAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
51635 GTTAATGGCTTCTTTTCAAA-CTCCACAA
1 GTCAGTGGCATCCTTTCAAAGC-CCACAA
*
51663 GTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
51691 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
51719 GTCAATGGCAT-CTCTTCAAAAACCCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * *
51748 GTCAATGGAATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
51776 GTCAGTGGCACCCTTT-AAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
51803 GTTAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
51831 GTCAGTGACATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
51859 GTCAGTGGCA-CTCTTTCAAAGCCCACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
*
51887 GTTAGTGGCAT
1 GTCAGTGGCAT
51898 GTCAGTAGCA
Statistics
Matches: 342, Mismatches: 50, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
27 29 0.08
28 263 0.77
29 49 0.14
30 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (28 bp):
GTCAGTGGCATCCTTTCAAAGCCCACAA
Found at i:51914 original size:39 final size:39
Alignment explanation
Indices: 51859--51936 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
51849 AAGCCCACAA
* * *
51859 GTCAGTGGCACTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
51898 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
51937 CTTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:51942 original size:28 final size:28
Alignment explanation
Indices: 51911--55730 Score: 3848
Period size: 28 Copynumber: 135.5 Consensus size: 28
51901 AGTAGCACCC
51911 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
51939 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
51967 CTTCAAAAGCTCACAAGTTAGTGCCAT-T
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * *
51995 TTTCCAAAGCCCACAAGTCAATGGTACCCT
1 TTT-CAAAGCCCACAAGTCAGTGGCA-TCT
* *
52025 TTT-AAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * * *
52052 TTTCAAAGCCCACAAGTTAATCGCTTCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
52080 TTTCAAAGCCCACAAGGT-AGTGGCACCC
1 TTTCAAAGCCCACAA-GTCAGTGGCATCT
* *
52108 TTTCAAAGCCCACAAGTAAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
52136 TTTCGAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
52164 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
52192 TTTCAAAGCCCACAAGTCAGTAGCA-CT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
52219 CTTTCAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
*
52248 TTTCAAAACCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
52276 TTTCGAAA-ACCACAAGTTAGTGGCACCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * *
52304 TTTCCAAGCCTACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
52332 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
52360 CTTCAAAAGCCCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* *
52389 CTTCAAAAGCCCACAAGTCAGTGGCATCA
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* *
52418 TTTCAAAGCCCACAAGTCAGCGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCA-TCT
* *
52447 TTT-AAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
52474 TTTCAAATCACACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* **
52502 CTTCAAAAGAACACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * *
52531 CTTCAAAAGACCC-TAAGTCAGTGGCATCC
1 TTTC-AAAG-CCCACAAGTCAGTGGCATCT
52560 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
52588 TATCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
52616 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
52644 TTTCAACGCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCA-TCT
* *
52673 TTT-AAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
52700 TTTCAAAACTCACAAGTCAGTGGTATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
52728 TTTCAACGCCCACAGGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
** *
52756 TTTCAAAGCAAACAAGTCAATGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
52784 TTTCAAAAGCCCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * * *
52813 TTTCAAAGCCCATAAATGAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
52841 TTTCAAAACCCATAAGTTAGTGACATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
52869 TTTCAAAACACACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
52897 CTTCAAAAGACCACAAGTCAGTGGTATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * * *
52926 CTTCAAAAGACCACAGGTTAGTGGCATCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
*
52955 TTTCAAAGCCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
52983 TTTCAAAGCCCACAAGTCAGTGACACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
53011 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
53039 TTTCAAAGCCCATAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
53067 TTTCAAAGCCCACAAGTCAATGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53095 CTTTAAAAACCCACAAGTCAATGGCATCT
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53124 CTTTAAAAACCCACAAGTCAATGGCATCT
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * * *
53153 TTTTAAAACCCACAAGTCAGTGACACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53181 TTT-AAAGCCTACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
53208 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53236 CTTCAAAAGACCACAAGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * *
53265 CTTTAAAAGCCCACAAGT-ACTGGCAACT
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
53293 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
53321 TTTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTTCAAAGCCCACAAGTCAGTGGCAT-CT
* *** * *
53350 TTT-AAAGCCCACAAGTTAGTAATACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
53377 TTTCAAAGCCCACAAGTTAGTGGTATCCT
1 TTTCAAAGCCCACAAGTCAGTGGCAT-CT
53406 TTT-AAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53433 TTTCAAAGCCCACAAGTCGGTGGTACCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
53461 TTTCAATGCCCATAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
53489 TTTCAAAGCCCACAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
53517 TTTCAAAGCTCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53545 CTTCAAAAGCCCACAAGTTAGTGGCATCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
*
53574 TTTCAAAGCCCACAAGTCAGTGGCACCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
53602 TTTCAAAGCCTACAAGTTAGTAGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
53630 TTTGAAAGCCTACAAGTTAGTTGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53658 CTTCAAAAGCTCACAAGTTAGTGGCAT-T
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * *
53686 TTTCTAAGGCCCACAAGTTAGTGGTACCCT
1 TTTC-AAAGCCCACAAGTCAGTGGCA-TCT
* * * *
53716 TTT-AAATCCCATAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53743 TTTCAAAGCCCACAAGTTAATGGCTTCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
53771 TTTCAAAGCCCATAAGTAAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
53799 TTTCAAAGCCCACAAGTAAGTGGCAT-T
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
53826 CTTTCAAAGTCCACAAGTTAGTGGCATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
53855 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
53883 TTTCAAAGCCCACAAGTTAGTAGCA-CT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
53910 CTATGAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
53939 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
** * * * *
53967 TTTTGAAGACCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
53995 TTTCAAAGCCCACAAGTCAATGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
54023 TTTCGAAA-ACCACAAGTTAGTGGCACCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * *
54051 TTTCAAAGCCTACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
54079 TTTCAAAGCCTACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
54107 CTTCAAAAGCCCATAAGTCAGTGGCATAT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* *
54136 TTTCAAAGCCCACAAGTCAATGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCA-TCT
*
54165 TTT-AAAGCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCA-TCT
* *
54193 TTT-AAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
54220 TTTCAAAACCCACAGGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* ** *
54248 CTTCAAAAGAACACAAGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * * * *
54277 CTTCAAAAGACCATAAGTTAGTGGTATCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
*
54306 TTTCAAAACCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * * * *
54334 TATCAAAGCTCATAAGTTAATGGCTTCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
54362 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
54390 TTTCAAAGCCCACAAGTTAGTGACACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
54418 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
54446 TTTCAAAACTCACAAGTCAGTGGTATCA
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
54474 TTACAAAGCGCACAAGTTAGTGGCAACT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
54502 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
54530 CTTCAAAAACTCATAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * * * *
54559 TTTCAAAGCCCATAAATGAATGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
54587 TTTCAAAGCCCACAAGTTAGTGACATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
54615 TTTCAAAACCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
54643 CTTCAAAAGACCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * * *
54672 CTTCAAAAGACCACAGGTTAGTGGCATCC
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
*
54701 TTTCAAAGCCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
54729 TTTCAAAGCCCACAAGTCAGTGGCATGC-
1 TTTCAAAGCCCACAAGTCAGTGGCAT-CT
* *
54757 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
54785 TTTCAAAGCCCATAAGTGAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
54813 TTTCAAAGCCCACAAGTCTA-TGGCATCT
1 TTTCAAAGCCCACAAGTC-AGTGGCATCT
* * *
54841 CTTCAAAAG-CCAAAAGTCAATGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* *
54869 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
54897 TTT-AAAACCTACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
54924 TTTCAAAGCCCACAAGTTAGTGACATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
54952 CTTCGAAAGACCACAAGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * *
54981 CTTTAAAAGCCCACAAGT-AATGGTAACT
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
55009 TTTCAAAACCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
55037 TTTCAAAGCCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * ** * *
55065 TTTTAAAGCCCACAAGTTAGTAACACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
55093 TTTCAAAG-CCACAAGTTAGTGGTATCCT
1 TTTCAAAGCCCACAAGTCAGTGGCAT-CT
55121 TTT-AAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
55148 TTTCAAAGGCCACAAGTTAGTGGCACCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * * *
55176 TTTCAATGCCCATAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
55204 TTTCAAAGCCCATAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
*
55232 TTTCAAAGCTCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
55260 CTTCAAAAGCCTACAAGTCAGTGGCATAT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
*
55289 TTTCAAAGCCCACAAGTCAGTGCCA-CAT
1 TTTCAAAGCCCACAAGTCAGTGGCATC-T
* * *
55317 TTTCAAAGCCTACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
55345 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
55373 CTTCAAAAGACCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* *
55402 CTTCAAAAGACCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTCAGTGGCATCT
* * * *
55431 TTTTAAAGCCCACATGTTAGTGGCATAT
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
55459 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
55487 TTTCAAAGCCCATAAGTTAGTGGCAT-T
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
55514 CTTTCAAAGCCCAAAAGTCAGCGGCATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
55543 TTTCAAAGCCCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* *
55571 TTTCAAAGCCCACAAGTCAATGGCATACCA
1 TTTCAAAGCCCACAAGTCAGTGGCAT--CT
* * * *
55601 TTTCAAAGCCTACACAAATCAATGGCACCC
1 TTTCAAAGCC--CACAAGTCAGTGGCATCT
* * *
55631 TTCCAAAGCCCATAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACAAGTCAGTGGCA-TCT
* * * *
55660 TTT-AAAGCCTACAAGTCAGTGGTACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCT
* * *
55687 CTTAAAAGCCCATAAGTCAGTGGCATCCCCT
1 TTTCAAAGCCCACAAGTCAGTGGCAT---CT
55718 TTT-AAAGCCCACA
1 TTTCAAAGCCCACA
55731 CAAGTCGGTG
Statistics
Matches: 3199, Mismatches: 518, Indels: 148
0.83 0.13 0.04
Matches are distributed among these distances:
27 151 0.05
28 2363 0.74
29 625 0.20
30 43 0.01
31 3 0.00
32 14 0.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCATCT
Found at i:55915 original size:25 final size:25
Alignment explanation
Indices: 55887--55961 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
55877 ATTAGCTCAA
55887 TGTCGCTAGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
* * * *
55912 TGTC-C-A-CCTT-TATTAGCTCAA
1 TGTCGCTAGCCTTGAATCAGCACAT
*
55933 TGTCGCTGGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
55958 TGTC
1 TGTC
55962 CACTTTTCCC
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
21 11 0.30
22 5 0.14
23 1 0.03
24 5 0.14
25 15 0.41
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (25 bp):
TGTCGCTAGCCTTGAATCAGCACAT
Found at i:55931 original size:46 final size:47
Alignment explanation
Indices: 55844--56055 Score: 259
Period size: 48 Copynumber: 4.5 Consensus size: 47
55834 AAGTCCGATA
* * *
55844 TCGCTGGCATTGAATCAGCATATTG-GCACCTTT-ATTAGCTCAATG
1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATG
*
55889 TCGCTAGCCTTGAATCAGCACATTGTCCACCTTT-ATTAGCTCAATG
1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATG
* *
55935 TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATG
1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTT-CATTAGCTCAATG
* * * * *
55983 TCGCTGGCCTTGAATCATCACATTGTCAACTTTTCCCTTAGCTCGATG
1 TCGCTGGCCTTGAATCAGCACATTGTCCACCTTT-CATTAGCTCAATG
* **
56031 TCGTTGGCCTTGAATTGGCACATTG
1 TCGCTGGCCTTGAATCAGCACATTG
56056 GCACTCTTCT
Statistics
Matches: 150, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
45 22 0.15
46 51 0.34
48 77 0.51
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (47 bp):
TCGCTGGCCTTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATG
Found at i:55936 original size:21 final size:22
Alignment explanation
Indices: 55869--55938 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
55859 CAGCATATTG
55869 GCACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
* * * *
55891 GCTAGCCTTGAATCAGCACATTGTC
1 GC-A-CCTT-TATTAGCTCAATGTC
55916 -CACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
55937 GC
1 GC
55939 TGGCCTTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 11 0.31
22 7 0.19
23 2 0.06
24 5 0.14
25 11 0.31
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (22 bp):
GCACCTTTATTAGCTCAATGTC
Found at i:56005 original size:94 final size:92
Alignment explanation
Indices: 55844--56055 Score: 255
Period size: 94 Copynumber: 2.3 Consensus size: 92
55834 AAGTCCGATA
* * *
55844 TCGCTGGCATTGAATCAGCATATTGGCACCTTTATTAGCTCAATGTCGCTAGCCTTGAATCAGCA
1 TCGCTGGCCTTGAATCAGCACATTGCCACCTTTATTAGCTCAATGTCGCTAGCCTTGAATCAGCA
*
55909 CATTGTCCACCTTT-ATTAGCTCAATG
66 CATTGTCAACCTTTCATTAGCTCAATG
* * *
55935 TCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATGTCGCTGGCCTTGAATCA
1 TCGCTGGCCTTGAATCAGCACATTG-CCACCTTT--ATTAGCTCAATGTCGCTAGCCTTGAATCA
* * * *
56000 TCACATTGTCAACTTTTCCCTTAGCTCGATG
63 GCACATTGTCAACCTTT-CATTAGCTCAATG
* **
56031 TCGTTGGCCTTGAATTGGCACATTG
1 TCGCTGGCCTTGAATCAGCACATTG
56056 GCACTCTTCT
Statistics
Matches: 102, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
91 23 0.23
92 6 0.06
94 41 0.40
96 32 0.31
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (92 bp):
TCGCTGGCCTTGAATCAGCACATTGCCACCTTTATTAGCTCAATGTCGCTAGCCTTGAATCAGCA
CATTGTCAACCTTTCATTAGCTCAATG
Found at i:56778 original size:20 final size:19
Alignment explanation
Indices: 56753--56918 Score: 123
Period size: 20 Copynumber: 8.8 Consensus size: 19
56743 TTTTACCCAG
56753 ATGTATCGATACAGTTTTCA
1 ATGTATCGATACA-TTTTCA
* *
56773 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTCA
56793 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATT-TTCA
56813 ATGTATCGATACATTTT--
1 ATGTATCGATACATTTTCA
*** *
56830 AT-T-TTTTTAC----CCA
1 ATGTATCGATACATTTTCA
56843 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACA-TTTTCA
* * *
56864 ATGTATCAATACATGTATGA
1 ATGTATCGATACAT-TTTCA
56884 ATGTATCGATACATTATTCA
1 ATGTATCGATACATT-TTCA
*
56904 ATGTATCGTTACATT
1 ATGTATCGATACATT
56919 CTATCTTTTT
Statistics
Matches: 113, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
14 2 0.02
15 5 0.04
16 5 0.04
17 2 0.02
19 6 0.05
20 91 0.81
21 2 0.02
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (19 bp):
ATGTATCGATACATTTTCA
Found at i:56869 original size:51 final size:48
Alignment explanation
Indices: 56792--56968 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 48
56782 TACATGTATG
* *
56792 AATGTATCGATACATTCTTCAATGTATCGATACATTTTATTTTTTTACCC
1 AATGTATCGATACATTTTTCAATGTATCGATACATTCTATTTTTTT--CC
* * *
56842 AGATGTATCGATACATTTTTCAATGTATCAATACA-TGTA------T-G
1 A-ATGTATCGATACATTTTTCAATGTATCGATACATTCTATTTTTTTCC
* *
56883 AATGTATCGATACATTATTCAATGTATCGTTACATTCTATCTTTTTTTCC
1 AATGTATCGATACATTTTTCAATGTATCGATACATTCTA--TTTTTTTCC
56933 AAATGTATCGATACATTTTTCAATGTATCGATACAT
1 -AATGTATCGATACATTTTTCAATGTATCGATACAT
56969 CTAGTTAAAA
Statistics
Matches: 104, Mismatches: 11, Indels: 23
0.75 0.08 0.17
Matches are distributed among these distances:
40 30 0.29
41 4 0.04
44 1 0.01
49 1 0.01
50 4 0.04
51 64 0.62
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.44
Consensus pattern (48 bp):
AATGTATCGATACATTTTTCAATGTATCGATACATTCTATTTTTTTCC
Found at i:56897 original size:91 final size:92
Alignment explanation
Indices: 56742--56968 Score: 377
Period size: 91 Copynumber: 2.5 Consensus size: 92
56732 AAAAGTCACA
*
56742 TTTTTACCCAGATGTATCGATACAGTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
* *
56807 TCTTCAATGTATCGATACATTTTAT-T
66 TATTCAATGTATCGATACATTCTATCT
*
56833 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCAATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
*
56898 TATTCAATGTATCGTTACATTCTATCT
66 TATTCAATGTATCGATACATTCTATCT
* *
56925 TTTTT-TCCAAATGTATCGATACATTTTTCAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACAT
56969 CTAGTTAAAA
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
91 121 0.95
92 6 0.05
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (92 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TATTCAATGTATCGATACATTCTATCT
Found at i:56951 original size:21 final size:20
Alignment explanation
Indices: 56927--56968 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
56917 TTCTATCTTT
56927 TTTTCCAAATGTATCGATACA
1 TTTTCC-AATGTATCGATACA
*
56948 TTTTTCAATGTATCGATACA
1 TTTTCCAATGTATCGATACA
56968 T
1 T
56969 CTAGTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.43
Consensus pattern (20 bp):
TTTTCCAATGTATCGATACA
Found at i:60639 original size:23 final size:23
Alignment explanation
Indices: 60613--60669 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
60603 TTATAATAAC
*
60613 TTAAACTCGATTTAATCCGAATA
1 TTAAACTCGATTTAATCCAAATA
* * *
60636 TTAAACTC-AATTAATTCAAATG
1 TTAAACTCGATTTAATCCAAATA
60658 TTAAACTCGATT
1 TTAAACTCGATT
60670 GCTCTGTTAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (23 bp):
TTAAACTCGATTTAATCCAAATA
Found at i:62117 original size:41 final size:41
Alignment explanation
Indices: 62053--62134 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
62043 CAAAGACAAT
* *
62053 GGAAATCAATTGGAGTAACTTTACA-AGTGATGGTATTTGAA
1 GGAAATCAATTGAAGTAACTTTACATA-TGATAGTATTTGAA
*
62094 GGAAATCAATT-AACGTAAGTTTACATATGATAGTATTTGAA
1 GGAAATCAATTGAA-GTAACTTTACATATGATAGTATTTGAA
62135 TATCATTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 1 0.03
41 34 0.94
42 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (41 bp):
GGAAATCAATTGAAGTAACTTTACATATGATAGTATTTGAA
Found at i:65876 original size:28 final size:29
Alignment explanation
Indices: 65853--68010 Score: 2100
Period size: 28 Copynumber: 76.0 Consensus size: 29
65843 TTAAGCTCAT
* *
65853 AAGTTAGTGGCATCCTTTT-AAAGCCCAA
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* ** *
65881 AAGTTAGTAACAT-CTTTTCAAAGCCCAT
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
65909 AAGTCAGTGG-AACCTTTTCAAAGTCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
65937 AAGTTAGTGGCAT-CTTTTCAAAACCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
65965 AAGTCAATGGCATCC-TTTCAAAGCCCAA
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
65993 AAGTCAGTGGCAT-CTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
66021 AAGTCAGTGGCA--CTCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCT-TTTCAAAGCCCAC
* * ***** * *
66049 AAGTTAGTGGCAT-GTTAGGGGCACCCTTTCAA
1 AAGTCAGTGGCATCCTT-TTCAAAGCC---CAC
** ** *
66081 AACCCACAAGT-TAATGGCATCCTTTCAAAGCCCAC
1 AA--GTC-AGTGGCAT--C--CTTTTCAAAGCCCAC
* * *
66116 AAGTCAGCGGCAT-CTCTTCAAAAACCCAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
*
66145 AAGTCAGTGACAT-CTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66173 AAGTCAGTGCCACCCTTTT-AAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66201 AAGTTAGTGGCAT-CATTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66229 AAGTTAGTGGCAT-CTTTTCAAAGCTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66257 AAGTCAGTGGTA-CCTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66285 AAGTTAGTGGCAT-CTTTTCAAAGCCGAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66313 AAGTTAGTGGCATCC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
66341 AAGTTAGTGGCATCC-ATTCAAAGCCAAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
66369 AAGTCAGTGGCAT-CTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * * *
66397 AAATTAGTGGCAT-CTCTTCAAAAGCCTAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
66426 AAGTCAGTGGCAT-CTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66454 AAGTCAATGGCA-CCATTTT-AAAGCCCAT
1 AAGTCAGTGGCATCC-TTTTCAAAGCCCAC
*
66482 AAGTTAGTGGCATCC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* **
66510 AAGTCAGTGGCAT-CTCTTTAAAAGAACAC
1 AAGTCAGTGGCATCCT-TTTCAAAGCCCAC
* * * **
66539 AGGTTAGTGGCAT-CTCTTCAAAATACCAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
66568 AAGTCAGTGGCATCC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
66596 AAATTAATGGCATCC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66624 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66652 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
66680 AAGTTAGTGGCATCC-TTTCAAAACTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66708 AAGTCAATGGCATTC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66736 AATTCAGTGGCAT-CTTTTCGAAA-CCCAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
*
66764 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66792 AAGTTAGTGGCATCC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66820 AAGTCAGTGGCATCC-TCTCAAAGCTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66848 AAGTTAGTGGCAT-CTCTTCAAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
*
66877 AAGTCAGTGGCAT-CTCTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66905 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
66933 AAGTTAGTGGCATCC-TTTCAAAGCTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
66961 AAGTCAGTGGCAT--TTCTTCAAAAGACCAC
1 AAGTCAGTGGCATCCTT-TTC-AAAGCCCAC
* *
66990 AAGTTAGTGGCATCC-TTT-AAATGCCCAA
1 AAGTCAGTGGCATCCTTTTCAAA-GCCCAC
*
67018 AAGTAAGTGGCAT-CTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67046 AAGTTAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67074 AAGTTAGTGGCATCC-TTTGAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67102 AAGTTAGTGGCATCC-TTTCGAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67130 AAGTCAGTGGCAT-CTCTTTAAAAGCCCAC
1 AAGTCAGTGGCATCCT-TTTCAAAGCCCAC
67159 AAGTCAGTGGCAT-CTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
67187 AAGTCAGTGGCACCCATTT-AAATCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
67215 AAATTAGTGACATCC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
67243 AAGTCAGTGTCAT-CTCTTCAAAAGACCAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
* *
67272 AAGTTAGTGGCAT-CTCTTTAAAAGCCCAC
1 AAGTCAGTGGCATCCT-TTTCAAAGCCCAC
* *
67301 AAGTCAGTGACAACC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67329 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
67357 AAGTTAGTGGCATCC-TTTCAAAACTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67385 AAGTCAATGGCATCC-TTTCAAAGCTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67413 AAGTTAGTGGTATCCTTTT-AAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67441 AAGTCAGTGGCATTC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67469 AAGTTAGTGGCA-CCTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
67497 AAGTTAATGGCATCCTTTT-AAAGCCTAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67525 AAGTCAGTGGCAT-CTCTTCAAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
67554 AAGTCAGTGGCAT-CTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * * *
67582 AAGTCAATGGCA-CCCTTTCAATGCCTAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67610 AAGTTAGTGGCATCC-TTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * * *
67638 AAGTCAATGGCAT-CTCTTCAAAAGACTAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
* **
67667 AAGTCAGTGGCAT-CTCTTCAAAAAACCAC
1 AAGTCAGTGGCATCCTTTTC-AAAGCCCAC
* *
67696 AAGTCAGTGGCATCC-TTTCAAAACCAAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67724 AAGTTAGTGGCAT-CTTTTCAATGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67752 AAGTCAGTGGCA-CCCTTTCAATGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * *
67780 AAGTTAGTGGCATCC-CTTCAAAGCTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67808 AAGTCAGTGGCATCC-TTTCAAAGGCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* *
67836 AAGTTAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
* * * *
67864 AAGTTAATGGTA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67892 AAGTCAGTGGCATACCCTTTCAAAGCCTACAC
1 AAGTCAGTGGCAT-CCTTTTCAAAGCC--CAC
* * * *
67924 AAATCAGTGGCA-CCCTTCCAAAGCTCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
*
67952 AAGTCAGTGGCA-CCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTTCAAAGCCCAC
67980 AAGTCAGTGGCATCCCCTTTT-AAAGCCCAC
1 AAGTCAGTGGCAT--CCTTTTCAAAGCCCAC
68010 A
1 A
68011 CAAGTCGATA
Statistics
Matches: 1799, Mismatches: 242, Indels: 176
0.81 0.11 0.08
Matches are distributed among these distances:
27 49 0.03
28 1339 0.74
29 330 0.18
30 40 0.02
31 5 0.00
32 20 0.01
33 3 0.00
34 2 0.00
35 7 0.00
38 3 0.00
39 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (29 bp):
AAGTCAGTGGCATCCTTTTCAAAGCCCAC
Found at i:65910 original size:56 final size:56
Alignment explanation
Indices: 65853--68010 Score: 2364
Period size: 56 Copynumber: 38.0 Consensus size: 56
65843 TTAAGCTCAT
* * * * ** *
65853 AAGTTAGTGGCATCCTTTTAAAGCCCAAAAGTTAGTAACATCTTTTCAAAGCCCAT
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * *
65909 AAGTCAGTGG-AACCTTTTCAAAGTCCACAAGTTAGTGGCATCTTTTCAAAACCCAC
1 AAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* *
65965 AAGTCAATGGCATCCTTTCAAAGCCCAAAAGTCAGTGGCATCTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * *
66021 AAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTTAGGGGCACCCTTTCAAAACC
1 AAGTCAGTGGCATC-CTTTCAAAGCCCAC-A---AGT--CA-G-T---GGCATCTTTTCAAAGCC
66085 CAC
54 CAC
* * * * *
66088 AAGTTAATGGCATCCTTTCAAAGCCCACAAGTCAGCGGCATCTCTTCAAAAACCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCAC
* * * *
66145 AAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAGTGCCACCCTTTT-AAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCAC
* * * *
66201 AAGTTAGTGGCATCATTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCTCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * *
66257 AAGTCAGTGGTA-CCTTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCGAC
1 AAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * ** *
66313 AAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCATTCAAAGCCAAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
66369 AAGTCAGTGGCATCTTTTCAAAGCCCACAAATTAGTGGCATCTCTTCAAAAGCCTAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCAC
* * * *
66426 AAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCACCATTTT-AAAGCCCAT
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-TTTTCAAAGCCCAC
* * **
66482 AAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTCTTTAAAAGAACAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCT-TTTCAAAGCCCAC
* * ** *
66539 AGGTTAGTGGCAT-CTCTTCAAAATACCACAAGTCAGTGGCATCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
66596 AAATTAATGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
66652 AAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAACTCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * *
66708 AAGTCAATGGCATTCTTTCAAAGCCCACAATTCAGTGGCATCTTTTCGAAA-CCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCAC
* * *
66764 AAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * *
66820 AAGTCAGTGGCATCCTCTCAAAGCTCACAAGTTAGTGGCATCTCTTCAAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCAC
* *
66877 AAGTCAGTGGCAT-CTCTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCT-TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * *
66933 AAGTTAGTGGCATCCTTTCAAAGCTCACAAGTCAGTGGCAT-TTCTTCAAAAGACCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTT-TTC-AAAGCCCAC
* * *
66990 AAGTTAGTGGCATCCTTT-AAATGCCCAAAAGTAAGTGGCATCTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAA-GCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
67046 AAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTGAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * *
67102 AAGTTAGTGGCATCCTTTCGAAGCCCACAAGTCAGTGGCATCTCTTTAAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCT-TTTCAAAGCCCAC
* * * *
67159 AAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACCCATTT-AAATCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCAC
* * * * * *
67215 AAATTAGTGACATCCTTTCAAAGCCCACAAGTCAGTGTCATCTCTTCAAAAGACCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCAC
* * * * *
67272 AAGTTAGTGGCATCTCTTTAAAAGCCCACAAGTCAGTGACAACCTTTCAAAGCCCAC
1 AAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
67329 AAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAACTCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * *
67385 AAGTCAATGGCATCCTTTCAAAGCTCACAAGTTAGTGGTATCCTTTT-AAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CTTTTCAAAGCCCAC
* * *
67441 AAGTCAGTGGCATTCTTTCAAAGCCCACAAGTTAGTGGCACCTTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
67497 AAGTTAATGGCATCCTTTTAAAGCCTACAAGTCAGTGGCATCTCTTCAAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCAC
* * * * * *
67554 AAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCACCCTTTCAATGCCTAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
67610 AAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCATCTCTTCAAAAGACTAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCAC
** * * *
67667 AAGTCAGTGGCAT-CTCTTCAAAAAACCACAAGTCAGTGGCATCCTTTCAAAACCAAC
1 AAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * * *
67724 AAGTTAGTGGCATCTTTTCAATGCCCACAAGTCAGTGGCACCCTTTCAATGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
67780 AAGTTAGTGGCATCCCTTCAAAGCTCACAAGTCAGTGGCATCCTTTCAAAGGCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * * * *
67836 AAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAATGGTACCCTTTCAAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
* * * * *
67892 AAGTCAGTGGCATACCCTTTCAAAGCCTACACAAATCAGTGGCACCCTTCCAAAGCTCAC
1 AAGTCAGTGGCAT--CCTTTCAAAGCC--CACAAGTCAGTGGCATCTTTTCAAAGCCCAC
*
67952 AAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCCCTTTT-AAAGCCCAC
1 AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT---CTTTTCAAAGCCCAC
68010 A
1 A
68011 CAAGTCGATA
Statistics
Matches: 1793, Mismatches: 253, Indels: 110
0.83 0.12 0.05
Matches are distributed among these distances:
55 23 0.01
56 1132 0.63
57 424 0.24
58 118 0.07
59 3 0.00
60 41 0.02
61 2 0.00
62 2 0.00
63 4 0.00
64 1 0.00
66 1 0.00
67 41 0.02
68 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (56 bp):
AAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCAC
Found at i:68195 original size:25 final size:25
Alignment explanation
Indices: 68167--68241 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
68157 ATCAACTCAA
68167 TGTCGCTGGCCTTGAATCAGCACAT
1 TGTCGCTGGCCTTGAATCAGCACAT
* * * * *
68192 TGT--CT-ACCTT-TATTAGCTCAA
1 TGTCGCTGGCCTTGAATCAGCACAT
*
68213 TGTCGTTGGCCTTGAATCAGCACAT
1 TGTCGCTGGCCTTGAATCAGCACAT
68238 TGTC
1 TGTC
68242 CACTTTCCCT
Statistics
Matches: 35, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
21 10 0.29
22 4 0.11
23 3 0.09
24 4 0.11
25 14 0.40
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (25 bp):
TGTCGCTGGCCTTGAATCAGCACAT
Found at i:68203 original size:46 final size:45
Alignment explanation
Indices: 68128--68294 Score: 201
Period size: 46 Copynumber: 3.6 Consensus size: 45
68118 CTGATATCGT
* * * * * *
68128 TGGCATTGAATTAGCATATTGGCACCTTTATCAACTCAATGTCGC
1 TGGCCTTGAATCAGCACATTGTCACCTTTATTAGCTCAATGTCGC
*
68173 TGGCCTTGAATCAGCACATTGTCTACCTTTATTAGCTCAATGTCGT
1 TGGCCTTGAATCAGCACATTGTC-ACCTTTATTAGCTCAATGTCGC
* *
68219 TGGCCTTGAATCAGCACATTGTC-CACTTTCCCTTAGCTCAATGTTGC
1 TGGCCTTGAATCAGCACATTGTCAC-CTTT--ATTAGCTCAATGTCGC
*
68266 TGGCCTTGAATCAGCACATTGTCAACTTT
1 TGGCCTTGAATCAGCACATTGTCACCTTT
68295 TCCCTTAGCA
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
44 1 0.01
45 23 0.22
46 42 0.40
47 40 0.38
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (45 bp):
TGGCCTTGAATCAGCACATTGTCACCTTTATTAGCTCAATGTCGC
Found at i:68269 original size:93 final size:94
Alignment explanation
Indices: 68162--68334 Score: 258
Period size: 93 Copynumber: 1.8 Consensus size: 94
68152 CCTTTATCAA
* *
68162 CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCTACCTTT-ATTAGCTCAATGTCGTTGGCCTT
1 CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCAACCTTTCATTAGCACAATGTCGTTGGCCTT
68226 GAATCAGCACATTGTCCACTTTCCCTTAG
66 GAATCAGCACATTGTCCACTTTCCCTTAG
* * * *
68255 CTCAATGTTGCTGGCCTTGAATCAGCACATTGTCAACTTTTCCCTTAGCACGATGTCGTTGGCCT
1 CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCAACCTTT-CATTAGCACAATGTCGTTGGCCT
**
68320 TGAATTGGCACATTG
65 TGAATCAGCACATTG
68335 GTACTCCTCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
93 38 0.54
95 32 0.46
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (94 bp):
CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCAACCTTTCATTAGCACAATGTCGTTGGCCTT
GAATCAGCACATTGTCCACTTTCCCTTAG
Found at i:68273 original size:47 final size:47
Alignment explanation
Indices: 68162--68334 Score: 224
Period size: 47 Copynumber: 3.7 Consensus size: 47
68152 CCTTTATCAA
* *
68162 CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCTACCTTT--ATTAG
1 CTCAATGTCGCTGGCCTTGAATCAGCACATTGTC-AACTTTCCCTTAG
* *
68208 CTCAATGTCGTTGGCCTTGAATCAGCACATTGTCCACTTTCCCTTAG
1 CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCAACTTTCCCTTAG
*
68255 CTCAATGTTGCTGGCCTTGAATCAGCACATTGTCAACTTTTCCCTTAG
1 CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCAAC-TTTCCCTTAG
* * * **
68303 CACGATGTCGTTGGCCTTGAATTGGCACATTG
1 CTCAATGTCGCTGGCCTTGAATCAGCACATTG
68335 GTACTCCTCT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
45 4 0.04
46 33 0.30
47 38 0.34
48 36 0.32
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (47 bp):
CTCAATGTCGCTGGCCTTGAATCAGCACATTGTCAACTTTCCCTTAG
Found at i:69057 original size:20 final size:20
Alignment explanation
Indices: 69032--69219 Score: 166
Period size: 20 Copynumber: 8.8 Consensus size: 20
69022 TTTTACCTAG
69032 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
* *
69052 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
* *
69072 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
69092 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
69112 ATGTATCGATACATTCTATTTTTTTACCTA
1 ATGTATCGATACATTC-------TT--C-A
*
69142 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTCTTCA
* *
69163 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
69183 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
69203 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
69220 GTCTTTTTTA
Statistics
Matches: 144, Mismatches: 9, Indels: 30
0.79 0.05 0.16
Matches are distributed among these distances:
19 2 0.01
20 117 0.81
21 3 0.02
22 1 0.01
24 2 0.01
27 2 0.01
29 1 0.01
30 1 0.01
31 15 0.10
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:69069 original size:12 final size:12
Alignment explanation
Indices: 69052--69105 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 12
69042 ACATTCTTCA
69052 ATGTATCGATAC
1 ATGTATCGATAC
69064 ATGTAT-G--A-
1 ATGTATCGATAC
69072 ATGTATCGATAC
1 ATGTATCGATAC
69084 ATGTAT-G--A-
1 ATGTATCGATAC
69092 ATGTATCGATAC
1 ATGTATCGATAC
69104 AT
1 AT
69106 TCTTCAATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 16
0.68 0.00 0.32
Matches are distributed among these distances:
8 12 0.35
9 4 0.12
11 4 0.12
12 14 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:69207 original size:91 final size:93
Alignment explanation
Indices: 69052--69271 Score: 363
Period size: 91 Copynumber: 2.4 Consensus size: 93
69042 ACATTCTTCA
* * *
69052 ATGTATCGATACATGTATGAATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTA
1 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTA
*
69117 TCGATACATTCTAT-TTTTTTA-CCTAG
66 TCGATACATTCTATCTTTTTTATCCCAG
69143 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTA
1 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTA
*
69208 TCGATACATTCTGTCTTTTTTATTTCCCAG
66 TCGATACATTCTATCTTTTTTA--TCCCAG
69238 ATGTATCGATACATTTTTCAATGTATCGATACAT
1 ATGTATCGATACATTTTTCAATGTATCGATACAT
69272 CTAGTTAAAA
Statistics
Matches: 120, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
91 75 0.62
92 7 0.06
95 38 0.32
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (93 bp):
ATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTA
TCGATACATTCTATCTTTTTTATCCCAG
Found at i:74163 original size:41 final size:41
Alignment explanation
Indices: 74099--74180 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 41
74089 CAAAGACAAT
* *
74099 GGAAATCAATTGGAGTAACTTTACA-AGTGATGGTATTTGAA
1 GGAAATCAATTGAAGTAACTTTACATA-TGATAGTATTTGAA
*
74140 GGAAATCAATT-AACGTAAGTTTACATATGATAGTATTTGAA
1 GGAAATCAATTGAA-GTAACTTTACATATGATAGTATTTGAA
74181 TATCATTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 1 0.03
41 34 0.94
42 1 0.03
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (41 bp):
GGAAATCAATTGAAGTAACTTTACATATGATAGTATTTGAA
Found at i:77914 original size:15 final size:15
Alignment explanation
Indices: 77894--77924 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
77884 TTTTGTCAAA
77894 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
77909 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
77924 T
1 T
77925 ACGAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (15 bp):
TCAAGTAAGATTGTG
Found at i:90667 original size:8 final size:9
Alignment explanation
Indices: 90655--90697 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
90645 AATAAAAGAA
90655 AAAAAATTG
1 AAAAAATTG
90664 AAAAAATTG
1 AAAAAATTG
**
90673 AAAAGAAAGG
1 AAAA-AATTG
*
90683 AAAAAAGTG
1 AAAAAATTG
90692 AAAAAA
1 AAAAAA
90698 AAATTATTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
9 22 0.76
10 7 0.24
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (9 bp):
AAAAAATTG
Found at i:90676 original size:19 final size:18
Alignment explanation
Indices: 90663--90698 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
90653 AAAAAAAATT
*
90663 GAAAAAATTGAAAAGAAAG
1 GAAAAAAGTGAAAA-AAAG
90682 GAAAAAAGTGAAAAAAA
1 GAAAAAAGTGAAAAAAA
90699 AATTATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 3 0.19
19 13 0.81
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.08
Consensus pattern (18 bp):
GAAAAAAGTGAAAAAAAG
Found at i:92242 original size:14 final size:14
Alignment explanation
Indices: 92223--92251 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
92213 ACCAATTTAT
92223 TCTAAAATAATGAA
1 TCTAAAATAATGAA
92237 TCTAAAATAATGAA
1 TCTAAAATAATGAA
92251 T
1 T
92252 ATATTTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.31
Consensus pattern (14 bp):
TCTAAAATAATGAA
Found at i:93968 original size:15 final size:15
Alignment explanation
Indices: 93948--93977 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
93938 TGAGGAAGAT
93948 CTAAAAATATATTTC
1 CTAAAAATATATTTC
93963 CTAAAAATATATTTC
1 CTAAAAATATATTTC
93978 AACCAACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
CTAAAAATATATTTC
Found at i:94150 original size:22 final size:22
Alignment explanation
Indices: 94125--94170 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
94115 TTATTAAATT
*
94125 ATAACATTAAATT-TTTATATTA
1 ATAA-ATTAAATTATTTACATTA
*
94147 ATAAATTAAGTTATTTACATTA
1 ATAAATTAAATTATTTACATTA
94169 AT
1 AT
94171 TTTATTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAAATTAAATTATTTACATTA
Found at i:94275 original size:2 final size:2
Alignment explanation
Indices: 94268--94294 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
94258 TGACATCTGC
94268 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
94295 AATAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94352 original size:22 final size:24
Alignment explanation
Indices: 94327--94386 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
94317 ATTTAAAAAG
*
94327 ATTAATAA-AAATAATT-TAATTT
1 ATTAATAATAAAAAATTATAATTT
94349 ATTAATAATAAAAAATTAATAATTT
1 ATTAATAATAAAAAATT-ATAATTT
* *
94374 AATATTAATAAAA
1 ATTAATAATAAAA
94387 TTAAATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.25
23 7 0.22
25 17 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
ATTAATAATAAAAAATTATAATTT
Found at i:94372 original size:30 final size:30
Alignment explanation
Indices: 94336--94416 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
94326 GATTAATAAA
*
94336 AATAATTTAAT-TTATTAATAATAAAAAATT
1 AATAATTTAATATTAATAA-AATAAAAAATT
* *
94366 AATAATTTAATATTAATAAAATTAAATATT
1 AATAATTTAATATTAATAAAATAAAAAATT
*
94396 TATAATTT-ATA-TAA-AAAATAA
1 AATAATTTAATATTAATAAAATAA
94417 TATTAAATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
27 6 0.13
28 3 0.07
29 3 0.07
30 27 0.60
31 6 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATTTAATATTAATAAAATAAAAAATT
Found at i:94380 original size:14 final size:14
Alignment explanation
Indices: 94336--94404 Score: 57
Period size: 14 Copynumber: 4.6 Consensus size: 14
94326 GATTAATAAA
94336 AATAATTTAATTTATT
1 AATAATTTAA--TATT
** *
94352 AATAATAAAAAATT
1 AATAATTTAATATT
94366 AATAATTTAATATT
1 AATAATTTAATATT
*
94380 AATAAAATTAAATATT
1 AAT--AATTTAATATT
*
94396 TATAATTTA
1 AATAATTTA
94405 TATAAAAAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
14 22 0.52
16 20 0.48
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATAATTTAATATT
Found at i:94387 original size:23 final size:23
Alignment explanation
Indices: 94350--94431 Score: 66
Period size: 22 Copynumber: 3.6 Consensus size: 23
94340 ATTTAATTTA
*
94350 TTAATAATAA-AAAATTAATAAT
1 TTAATATTAATAAAATTAATAAT
*
94372 TTAATATTAATAAAATTAAATATT
1 TTAATATTAATAAAATT-AATAAT
94396 TATAAT-TTATATAAAA--AATAAT
1 T-TAATATTA-ATAAAATTAATAAT
94418 ATTAA-ATTTAATAA
1 -TTAATA-TTAATAA
94432 TTCAAATATG
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
22 21 0.42
23 10 0.20
24 9 0.18
25 10 0.20
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TTAATATTAATAAAATTAATAAT
Found at i:94401 original size:25 final size:25
Alignment explanation
Indices: 94327--94411 Score: 70
Period size: 24 Copynumber: 3.4 Consensus size: 25
94317 ATTTAAAAAG
* *
94327 ATTAATAAAAATAATTTAATTTATTAAT
1 ATTAATAAAATTAA-AT-ATTTA-TAAT
* *
94355 AATAA-AAAATT-AATAATT-TAAT
1 ATTAATAAAATTAAATATTTATAAT
94377 ATTAATAAAATTAAATATTTATAAT
1 ATTAATAAAATTAAATATTTATAAT
94402 -TTATATAAAA
1 ATTA-ATAAAA
94412 AATAATATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
22 8 0.17
23 6 0.13
24 12 0.26
25 11 0.23
26 1 0.02
27 5 0.11
28 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTAATAAAATTAAATATTTATAAT
Found at i:94744 original size:5 final size:5
Alignment explanation
Indices: 94729--94799 Score: 56
Period size: 6 Copynumber: 13.2 Consensus size: 5
94719 AGAGTTGGTC
*
94729 ATTTAA ATTTA ATTTAA ATATA ATATTA ATATT- ATTTA TATTTA TATTT-
1 ATTT-A ATTTA ATTT-A ATTTA AT-TTA AT-TTA ATTTA -ATTTA -ATTTA
94778 ATTTA ATTTTA ATTTA ATTTA A
1 ATTTA A-TTTA ATTTA ATTTA A
94800 AATATAATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
4 6 0.11
5 21 0.37
6 30 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTTA
Found at i:94745 original size:11 final size:11
Alignment explanation
Indices: 94729--94800 Score: 62
Period size: 11 Copynumber: 6.6 Consensus size: 11
94719 AGAGTTGGTC
94729 ATTTAAATTTA
1 ATTTAAATTTA
*
94740 ATTTAAATATA
1 ATTTAAATTTA
94751 ATATT-AATATT-
1 AT-TTAAAT-TTA
*
94762 ATTTATATTTA
1 ATTTAAATTTA
94773 TATTT--ATTTA
1 -ATTTAAATTTA
*
94783 ATTTTAATTTA
1 ATTTAAATTTA
94794 ATTTAAA
1 ATTTAAA
94801 ATATAATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
9 4 0.08
10 9 0.18
11 30 0.60
12 7 0.14
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
ATTTAAATTTA
Found at i:94788 original size:16 final size:16
Alignment explanation
Indices: 94729--94809 Score: 62
Period size: 16 Copynumber: 5.0 Consensus size: 16
94719 AGAGTTGGTC
94729 ATTTAA-ATTTAATTT
1 ATTTAATATTTAATTT
*
94744 AAATATAATA-TTAATATT
1 --ATTTAATATTTAAT-TT
94762 ATTT-ATATTTATATTT
1 ATTTAATATTTA-ATTT
94778 ATTTAAT-TTTAATTT
1 ATTTAATATTTAATTT
* *
94793 AATTTAAAATATAATTT
1 -ATTTAATATTTAATTT
94810 TTAAATTTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
15 7 0.13
16 22 0.42
17 21 0.40
18 3 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTAATATTTAATTT
Found at i:94836 original size:54 final size:54
Alignment explanation
Indices: 94729--94836 Score: 123
Period size: 54 Copynumber: 2.0 Consensus size: 54
94719 AGAGTTGGTC
* * *
94729 ATTTAAATTTAATTTAAATATAATATTAATATTATTTATATTTATATTTATTTA
1 ATTTAAATTTAATTTAAATATAATATTAATATTATTAAAATTTATATTAATTTA
* *
94783 ATTTTAATTTAATTTAAAATATAATTTTTAA-ATT-TTAAAATTTA-ATTAAATTTA
1 ATTTAAATTTAATTT-AAATATAA-TATTAATATTATTAAAATTTATATT-AATTTA
94837 TTTGTATTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
53 3 0.07
54 27 0.59
55 11 0.24
56 5 0.11
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (54 bp):
ATTTAAATTTAATTTAAATATAATATTAATATTATTAAAATTTATATTAATTTA
Found at i:95772 original size:5 final size:6
Alignment explanation
Indices: 95748--95777 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
95738 CTCGTCAACG
95748 TATTTT ATATTTT TATTTT TATTTT TATTT
1 TATTTT -TATTTT TATTTT TATTTT TATTT
95778 ACTTGGAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
TATTTT
Found at i:98421 original size:34 final size:34
Alignment explanation
Indices: 98382--98491 Score: 148
Period size: 34 Copynumber: 3.2 Consensus size: 34
98372 TAAAATATCT
* *
98382 TGCTCACTTAACACATTACCTAACGCACCTAATA
1 TGCTCACTTAACACATCACCTAACACACCTAATA
* * *
98416 TGCTCACCTAACACATCACTTAATACACCTAATA
1 TGCTCACTTAACACATCACCTAACACACCTAATA
* *
98450 TGCTTCACTTAACACACCACCTAACACAGCTAATA
1 TGC-TCACTTAACACATCACCTAACACACCTAATA
98485 TGCTCAC
1 TGCTCAC
98492 CTAATACACC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
34 36 0.55
35 29 0.45
ACGTcount: A:0.35, C:0.34, G:0.05, T:0.25
Consensus pattern (34 bp):
TGCTCACTTAACACATCACCTAACACACCTAATA
Found at i:98495 original size:22 final size:23
Alignment explanation
Indices: 98467--98546 Score: 108
Period size: 26 Copynumber: 3.4 Consensus size: 23
98457 CTTAACACAC
*
98467 CACCTAACACAGCTAATATGC-T
1 CACCTAACACACCTAATATGCTT
*
98489 CACCTAATACACCTAATATGCTT
1 CACCTAACACACCTAATATGCTT
98512 CACCTAACATACCACCTAATATGCTT
1 CACCTAAC--A-CACCTAATATGCTT
98538 CACCTAACA
1 CACCTAACA
98547 TACCACCTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
22 19 0.37
23 8 0.16
24 1 0.02
25 1 0.02
26 22 0.43
ACGTcount: A:0.36, C:0.34, G:0.05, T:0.25
Consensus pattern (23 bp):
CACCTAACACACCTAATATGCTT
Found at i:98517 original size:14 final size:14
Alignment explanation
Indices: 98498--98544 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
98488 TCACCTAATA
98498 CACCTAATATGCTT
1 CACCTAATATGCTT
* *
98512 CACCTAACATAC--
1 CACCTAATATGCTT
98524 CACCTAATATGCTT
1 CACCTAATATGCTT
98538 CACCTAA
1 CACCTAA
98545 CATACCACCT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 10 0.37
14 17 0.63
ACGTcount: A:0.34, C:0.34, G:0.04, T:0.28
Consensus pattern (14 bp):
CACCTAATATGCTT
Found at i:98529 original size:12 final size:12
Alignment explanation
Indices: 98512--98558 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
98502 TAATATGCTT
98512 CACCTAACATAC
1 CACCTAACATAC
* *
98524 CACCTAATATGC
1 CACCTAACATAC
98536 TTCACCTAACATAC
1 --CACCTAACATAC
98550 CACCTAACA
1 CACCTAACA
98559 CAGCTAATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 19 0.66
14 10 0.34
ACGTcount: A:0.38, C:0.38, G:0.02, T:0.21
Consensus pattern (12 bp):
CACCTAACATAC
Found at i:98531 original size:26 final size:26
Alignment explanation
Indices: 98479--98556 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
98469 CCTAACACAG
98479 CTAATATGC-TCACCT-A-ATA-CAC
1 CTAATATGCTTCACCTAACATACCAC
98501 CTAATATGCTTCACCTAACATACCAC
1 CTAATATGCTTCACCTAACATACCAC
98527 CTAATATGCTTCACCTAACATACCAC
1 CTAATATGCTTCACCTAACATACCAC
98553 CTAA
1 CTAA
98557 CACAGCTAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
22 9 0.17
23 6 0.12
24 1 0.02
25 3 0.06
26 33 0.63
ACGTcount: A:0.36, C:0.33, G:0.04, T:0.27
Consensus pattern (26 bp):
CTAATATGCTTCACCTAACATACCAC
Found at i:98575 original size:22 final size:22
Alignment explanation
Indices: 98538--98605 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 22
98528 TAATATGCTT
*
98538 CACCTAACATAC-CACCTAACA
1 CACCTAATATACTCACCTAACA
* *
98559 CAGCTAATATGCTCACCTAACA
1 CACCTAATATACTCACCTAACA
* *
98581 CACCTAATATATTTACCTAACA
1 CACCTAATATACTCACCTAACA
98603 CAC
1 CAC
98606 TTAACAAAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 9 0.23
22 30 0.77
ACGTcount: A:0.40, C:0.35, G:0.03, T:0.22
Consensus pattern (22 bp):
CACCTAATATACTCACCTAACA
Found at i:103338 original size:34 final size:34
Alignment explanation
Indices: 103299--103416 Score: 173
Period size: 34 Copynumber: 3.4 Consensus size: 34
103289 TAAAATATCT
* *
103299 TGCTCACCTAACACATTACTTAACACACCTAATA
1 TGCTCACCTAACACATCACCTAACACACCTAATA
* *
103333 TGCTCACTTAACACATCACCTAACACGCCTAATA
1 TGCTCACCTAACACATCACCTAACACACCTAATA
*
103367 TGCTTCACCTAACACACCACCTAACACACCTAATA
1 TGC-TCACCTAACACATCACCTAACACACCTAATA
*
103402 TGCTCACCTACCACA
1 TGCTCACCTAACACA
103417 CCTAATATGT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
34 44 0.59
35 31 0.41
ACGTcount: A:0.36, C:0.37, G:0.04, T:0.23
Consensus pattern (34 bp):
TGCTCACCTAACACATCACCTAACACACCTAATA
Found at i:103389 original size:12 final size:12
Alignment explanation
Indices: 103372--103396 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
103362 TAATATGCTT
103372 CACCTAACACAC
1 CACCTAACACAC
103384 CACCTAACACAC
1 CACCTAACACAC
103396 C
1 C
103397 TAATATGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.52, G:0.00, T:0.08
Consensus pattern (12 bp):
CACCTAACACAC
Found at i:103416 original size:22 final size:22
Alignment explanation
Indices: 103384--103438 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
103374 CCTAACACAC
103384 CACCTAACACACCTAATATGCT
1 CACCTAACACACCTAATATGCT
* *
103406 CACCTACCACACCTAATATGTT
1 CACCTAACACACCTAATATGCT
*
103428 TACCTAACACA
1 CACCTAACACA
103439 TTTAACAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.36, G:0.04, T:0.24
Consensus pattern (22 bp):
CACCTAACACACCTAATATGCT
Found at i:105973 original size:19 final size:18
Alignment explanation
Indices: 105949--106030 Score: 83
Period size: 18 Copynumber: 4.5 Consensus size: 18
105939 TAATCTGTGT
105949 TTCTTAAAAAATCTAATGA
1 TTCTTAAAAAATCT-ATGA
* * *
105968 TTCTTAGAAAATCTGTAA
1 TTCTTAAAAAATCTATGA
* * *
105986 TTCCTAGAAAATCTAAGA
1 TTCTTAAAAAATCTATGA
*
106004 TTCTTAAAATATCTATGA
1 TTCTTAAAAAATCTATGA
*
106022 TTCCTAAAA
1 TTCTTAAAA
106031 TCTATAATTT
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
18 38 0.75
19 13 0.25
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (18 bp):
TTCTTAAAAAATCTATGA
Found at i:105982 original size:37 final size:35
Alignment explanation
Indices: 105953--106030 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 35
105943 CTGTGTTTCT
105953 TAAAAAATCTAATGATTCTTAGAAAATCTGTAATTCC
1 TAAAAAATCTAA-GATTCTTA-AAAATCTGTAATTCC
* * *
105990 TAGAAAATCTAAGATTCTTAAAATATCTATGATTCC
1 TAAAAAATCTAAGATTCTTAAAA-ATCTGTAATTCC
106026 TAAAA
1 TAAAA
106031 TCTATAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 3 0.08
36 22 0.61
37 11 0.31
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.35
Consensus pattern (35 bp):
TAAAAAATCTAAGATTCTTAAAAATCTGTAATTCC
Found at i:107679 original size:26 final size:26
Alignment explanation
Indices: 107640--107689 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
107630 AATGTTAGTG
107640 TTTGCTCCTCTTTTTCTTCGATATTA
1 TTTGCTCCTCTTTTTCTTCGATATTA
*
107666 TTTGCTCCTTTTTTTCTTCGATAT
1 TTTGCTCCTCTTTTTCTTCGATAT
107690 CATATTTCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.10, C:0.22, G:0.08, T:0.60
Consensus pattern (26 bp):
TTTGCTCCTCTTTTTCTTCGATATTA
Found at i:108772 original size:18 final size:17
Alignment explanation
Indices: 108699--108826 Score: 73
Period size: 19 Copynumber: 7.4 Consensus size: 17
108689 ATTATTAGGG
108699 TTAAAAATCTATGAT--
1 TTAAAAATCTATGATCC
* *
108714 TACAAAAATCTATGAT-T
1 T-TAAAAATCTATGATCC
** * *
108731 TTAGGAATCTGTGATTC
1 TTAAAAATCTATGATCC
108748 TTAAAAAATCTAATGATCC
1 TT-AAAAATCT-ATGATCC
* *
108767 TTAAAAAATCTGTGATTC
1 TT-AAAAATCTATGATCC
* *
108785 TTAAAAACTTTAAGATTCC
1 TTAAAAA-TCTATGA-TCC
* *
108804 TAAAAAATCTATGATTC
1 TTAAAAATCTATGATCC
108821 TTAAAA
1 TTAAAA
108827 TTTGTAATTT
Statistics
Matches: 85, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
15 1 0.01
16 23 0.27
17 15 0.18
18 22 0.26
19 24 0.28
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.37
Consensus pattern (17 bp):
TTAAAAATCTATGATCC
Found at i:108808 original size:36 final size:37
Alignment explanation
Indices: 108736--108826 Score: 132
Period size: 37 Copynumber: 2.5 Consensus size: 37
108726 TGATTTTAGG
108736 AATCTGTGATTCTTAAAAAATCTAATGATCCTTAAAA
1 AATCTGTGATTCTTAAAAAATCTAATGATCCTTAAAA
* *
108773 AATCTGTGATTCTTAAAAACTTTAA-GATTCC-TAAAA
1 AATCTGTGATTCTTAAAAAATCTAATGA-TCCTTAAAA
*
108809 AATCTATGATTCTTAAAA
1 AATCTGTGATTCTTAAAA
108827 TTTGTAATTT
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
36 24 0.48
37 26 0.52
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (37 bp):
AATCTGTGATTCTTAAAAAATCTAATGATCCTTAAAA
Found at i:109906 original size:14 final size:15
Alignment explanation
Indices: 109887--109916 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
109877 GGAGACTAAA
109887 ATTTTTATTTA-CTT
1 ATTTTTATTTATCTT
109901 ATTTTTATTTATCTT
1 ATTTTTATTTATCTT
109916 A
1 A
109917 ATAAAAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (15 bp):
ATTTTTATTTATCTT
Found at i:110887 original size:23 final size:23
Alignment explanation
Indices: 110860--110905 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
110850 ACCTCTCAAT
*
110860 TTCTTCAAGA-ATTATACCCCAAA
1 TTCTT-AAGAGATTATAACCCAAA
*
110883 TTCTTAAGAGATTGTAACCCAAA
1 TTCTTAAGAGATTATAACCCAAA
110906 GTTGAATGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (23 bp):
TTCTTAAGAGATTATAACCCAAA
Found at i:112258 original size:31 final size:33
Alignment explanation
Indices: 112222--112291 Score: 108
Period size: 31 Copynumber: 2.2 Consensus size: 33
112212 AGATTAAGTG
* *
112222 AAATATGAATCAATAAACAA-T-TTGATGTAGA
1 AAATATGAATCAATAAACAAGTATTCATGTAAA
112253 AAATATGAATCAATAAACAAGTATTCATGTAAA
1 AAATATGAATCAATAAACAAGTATTCATGTAAA
112286 AAATAT
1 AAATAT
112292 ATTGCATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 20 0.57
32 1 0.03
33 14 0.40
ACGTcount: A:0.54, C:0.07, G:0.10, T:0.29
Consensus pattern (33 bp):
AAATATGAATCAATAAACAAGTATTCATGTAAA
Found at i:114037 original size:33 final size:33
Alignment explanation
Indices: 113994--114069 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 33
113984 GCCTTAAATA
* *
113994 ATACTCATGTATCGATACAAAGAACTCAGTATCG
1 ATACT-ATGTATAGATACAAAGAACGCAGTATCG
* * *
114028 ATACTATGTATAGATACTAAGGACGCAGTGTCG
1 ATACTATGTATAGATACAAAGAACGCAGTATCG
114061 ATACATATG
1 ATAC-TATG
114070 GGTTTTCTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
33 27 0.75
34 9 0.25
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (33 bp):
ATACTATGTATAGATACAAAGAACGCAGTATCG
Found at i:120065 original size:52 final size:52
Alignment explanation
Indices: 119987--120115 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
119977 CGAAATATGA
*
119987 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
120039 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
* *
120091 AAATTCGCCTGTATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
120116 AAGATTAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
Found at i:120125 original size:52 final size:52
Alignment explanation
Indices: 119987--120135 Score: 183
Period size: 52 Copynumber: 2.9 Consensus size: 52
119977 CGAAATATGA
* *** *
119987 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTCGCCTGCATGTATCGATACAAGATATAGTGTATCGATACATCTAGGC
* ***
120039 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTAGGC
1 AAATTCGCCTGCATGTATCGATACAAGATATAGTGTATCGATACATCTAGGC
* *
120091 AAATTCGCCTGTATGTATCGATACAAAGAT-TAGTGTATCAATACA
1 AAATTCGCCTGCATGTATCGATAC-AAGATATAGTGTATCGATACA
120136 ATGTATCGAT
Statistics
Matches: 89, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
52 87 0.98
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTCGCCTGCATGTATCGATACAAGATATAGTGTATCGATACATCTAGGC
Found at i:120194 original size:19 final size:18
Alignment explanation
Indices: 120170--120267 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
120160 TAGCTTATAT
120170 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
120189 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
120202 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
120221 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
120234 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
120254 TGTATCGATACAAA
1 TGTATCGATACAAA
120268 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:120207 original size:13 final size:13
Alignment explanation
Indices: 120189--120245 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
120179 ACAAAACTTA
120189 TGTATCGATACAT
1 TGTATCGATACAT
120202 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
120220 ATGTATCGATACAT
1 -TGTATCGATACAT
120234 TGTATCGATACA
1 TGTATCGATACA
120246 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:120209 original size:32 final size:32
Alignment explanation
Indices: 120168--120265 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
120158 AGTAGCTTAT
*
120168 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
120200 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
120232 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
120265 A
1 A
120266 AATCGTTGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:122608 original size:13 final size:13
Alignment explanation
Indices: 122590--122615 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
122580 ACAAAGATCG
122590 ATGTATCGATACA
1 ATGTATCGATACA
122603 ATGTATCGATACA
1 ATGTATCGATACA
122616 TTTGAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:122678 original size:13 final size:13
Alignment explanation
Indices: 122660--122711 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
122650 AGCTTCATAG
122660 CGATACATTGTAT
1 CGATACATTGTAT
122673 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
122692 CGATACATTGTAT
1 CGATACATTGTAT
122705 CGATACA
1 CGATACA
122712 AATTGTTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:127038 original size:34 final size:35
Alignment explanation
Indices: 126969--127041 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 35
126959 GGTATTTATG
*
126969 GAAAGAATAAGCACAAAAGAATATAAATGAGCTTT
1 GAAAGAATAAGCACAAAAGAATATAAAAGAGCTTT
* **
127004 GAAAGAAT-AGCA-ACAAATAATATAAAAGCTCTTT
1 GAAAGAATAAGCACA-AAAGAATATAAAAGAGCTTT
127038 GAAA
1 GAAA
127042 TGTAAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 1 0.03
34 24 0.73
35 8 0.24
ACGTcount: A:0.55, C:0.10, G:0.15, T:0.21
Consensus pattern (35 bp):
GAAAGAATAAGCACAAAAGAATATAAAAGAGCTTT
Found at i:127417 original size:20 final size:19
Alignment explanation
Indices: 127373--127423 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
127363 ACTTTTTAAG
* *
127373 ATGTATCGATACTATGAGC
1 ATGTATCGATACTAAGAAC
*
127392 ATGTATCGATACTAAGCAAT
1 ATGTATCGATACTAAG-AAC
127412 ATGTATCGATAC
1 ATGTATCGATAC
127424 ATCTCGGTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (19 bp):
ATGTATCGATACTAAGAAC
Found at i:132160 original size:6 final size:6
Alignment explanation
Indices: 132149--132189 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
132139 CCGGAAATGA
132149 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAG
1 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAG
132190 TTTTCGTTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (6 bp):
AAGAGG
Found at i:133994 original size:24 final size:24
Alignment explanation
Indices: 133966--134011 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
133956 AATAAAAATT
133966 AGCCACCAATTTTGACAAACAACA
1 AGCCACCAATTTTGACAAACAACA
*
133990 AGCCACCAATTTTTACAAACAA
1 AGCCACCAATTTTGACAAACAA
134012 AAATAACCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.28, G:0.07, T:0.20
Consensus pattern (24 bp):
AGCCACCAATTTTGACAAACAACA
Found at i:134049 original size:28 final size:28
Alignment explanation
Indices: 134016--134098 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
134006 AAACAAAAAT
*
134016 AACCACCATATTTGACAAATATAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
134044 AACCACCATATTTGACAAATACAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
*
134072 AACTACCATATTTGACAAATACAAAGG
1 AACCACCATATTTGACAAATACAAAGG
134099 GTGGTATTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.20
Consensus pattern (28 bp):
AACCACCATATTTGACAAATACAAAGGA
Found at i:136029 original size:21 final size:22
Alignment explanation
Indices: 135991--136036 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
135981 ATCTGTTGAA
* **
135991 ACTCCACCTGTTTTGGAGTA-T
1 ACTCCACCTGCTGCGGAGTACT
136012 ACTCCACCTGCTGCGGAGTACT
1 ACTCCACCTGCTGCGGAGTACT
136034 ACT
1 ACT
136037 TGTCTGAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (22 bp):
ACTCCACCTGCTGCGGAGTACT
Found at i:138610 original size:24 final size:24
Alignment explanation
Indices: 138582--138627 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
138572 AATAAAAATT
138582 AGCCACCAATTTTGACAAACAACA
1 AGCCACCAATTTTGACAAACAACA
*
138606 AGCCACCAATTTTTACAAACAA
1 AGCCACCAATTTTGACAAACAA
138628 AAATAACCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.28, G:0.07, T:0.20
Consensus pattern (24 bp):
AGCCACCAATTTTGACAAACAACA
Found at i:138665 original size:28 final size:28
Alignment explanation
Indices: 138632--138714 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
138622 AAACAAAAAT
*
138632 AACCACCATATTTGACAAATATAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
138660 AACCACCATATTTGACAAATACAAAGGA
1 AACCACCATATTTGACAAATACAAAGGA
*
138688 AACTACCATATTTGACAAATACAAAGG
1 AACCACCATATTTGACAAATACAAAGG
138715 GTGGTATTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.20
Consensus pattern (28 bp):
AACCACCATATTTGACAAATACAAAGGA
Found at i:139803 original size:26 final size:26
Alignment explanation
Indices: 139764--139823 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
139754 GGGTTTGGGG
* * *
139764 AAGAAAGAACAAAAAAGGAA-GAAAA
1 AAGAAAAAAAAAAAAAAGAAGGAAAA
*
139789 ATAGAAAAAAAAAAAAAAGAAGGAAAG
1 A-AGAAAAAAAAAAAAAAGAAGGAAAA
139816 AAGAAAAA
1 AAGAAAAA
139824 GAAGGAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.03
26 23 0.79
27 5 0.17
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (26 bp):
AAGAAAAAAAAAAAAAAGAAGGAAAA
Found at i:139840 original size:20 final size:17
Alignment explanation
Indices: 139802--139837 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
139792 GAAAAAAAAA
139802 AAAAAGAAGGAAAGAAG
1 AAAAAGAAGGAAAGAAG
*
139819 AAAAAGAAGGAAATAAG
1 AAAAAGAAGGAAAGAAG
139836 AA
1 AA
139838 GAATAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (17 bp):
AAAAAGAAGGAAAGAAG
Found at i:140809 original size:15 final size:15
Alignment explanation
Indices: 140789--140817 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
140779 ATATTTCATG
140789 TTTTTTT-AAAAATA
1 TTTTTTTGAAAAATA
140803 TTTTTTTGAAAAATA
1 TTTTTTTGAAAAATA
140818 CATGAAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TTTTTTTGAAAAATA
Found at i:143213 original size:17 final size:18
Alignment explanation
Indices: 143188--143226 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
143178 AAAAAACAAT
143188 AAAAAAAA-CTTGATTGG
1 AAAAAAAACCTTGATTGG
*
143205 AAAATAAACCTTGATTGG
1 AAAAAAAACCTTGATTGG
143223 AAAA
1 AAAA
143227 CCTCGAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (18 bp):
AAAAAAAACCTTGATTGG
Found at i:143364 original size:16 final size:17
Alignment explanation
Indices: 143332--143364 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
143322 ACTTTGCTTT
143332 AAAATCAAAGGATTAATA
1 AAAATCAAA-GATTAATA
143350 AAAATCAAA-ATTAAT
1 AAAATCAAAGATTAAT
143365 TTTATTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
AAAATCAAAGATTAATA
Found at i:143838 original size:323 final size:323
Alignment explanation
Indices: 143448--144068 Score: 1215
Period size: 323 Copynumber: 1.9 Consensus size: 323
143438 AATCAAATTC
143448 ATTTTAAGGCATCTGAATTTCTCAAAAAGGTGATTTGAGATAATTGTTTAAATTTAATTATGGTA
1 ATTTTAAGGCATCTGAATTTCTCAAAAAGGTGATTTGAGATAATTGTTTAAATTTAATTATGGTA
143513 AAAAAACGGGTAACAACATCACACTATCTAAATTTTTTATTTTATTTCAGGCTCATTTGAAGATT
66 AAAAAACGGGTAACAACATCACACTATCTAAATTTTTTATTTTATTTCAGGCTCATTTGAAGATT
143578 TTACAAGGCAAACGAGATATCGTTGAAAAGGTAACTCGACGAAGTTTAACATAAAAATATTCAAA
131 TTACAAGGCAAACGAGATATCGTTGAAAAGGTAACTCGACGAAGTTTAACATAAAAATATTCAAA
*
143643 AAGTCTCAAAAAATTGCATTATTGGAGAAAGGAAATTTTAAGTTCGAATTTAGTTCGGCACTAAC
196 AAGTCTCAAAAAATTGCATTATTGGAGAAAGGAAATTTTAAATTCGAATTTAGTTCGGCACTAAC
143708 AGCAAGTGTAAGAAAAAGGAAGCACTCGGGCTCAGAAATCCTTCCCTAGATTTTAAATATCAG
261 AGCAAGTGTAAGAAAAAGGAAGCACTCGGGCTCAGAAATCCTTCCCTAGATTTTAAATATCAG
143771 ATTTTAAGGCATCTGAATTTCTCAAAAAGGTGATTTGAGATAATTGTTTAAATTTAATTATGGTA
1 ATTTTAAGGCATCTGAATTTCTCAAAAAGGTGATTTGAGATAATTGTTTAAATTTAATTATGGTA
143836 AAAAAACGGGTAACAACATCACACTATCTAAATTTTTTATTTTATTTCAGGCTCATTTGAAGATT
66 AAAAAACGGGTAACAACATCACACTATCTAAATTTTTTATTTTATTTCAGGCTCATTTGAAGATT
*
143901 TTACAAGGCAAACGAGATATCGTTGAAAAGGTAACTCGACGAAGTTTAACATAAAAATGTTCAAA
131 TTACAAGGCAAACGAGATATCGTTGAAAAGGTAACTCGACGAAGTTTAACATAAAAATATTCAAA
143966 AAGTCTCAAAAAATTGCATTATTGGAGAAAGGAAATTTTAAATTCGAATTTAGTTCGGCACTAAC
196 AAGTCTCAAAAAATTGCATTATTGGAGAAAGGAAATTTTAAATTCGAATTTAGTTCGGCACTAAC
*
144031 AGCAAGTGTAAGAAAAAGGAAGCACTCGGGCTTAGAAA
261 AGCAAGTGTAAGAAAAAGGAAGCACTCGGGCTCAGAAA
144069 GTCATAGACG
Statistics
Matches: 295, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
323 295 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (323 bp):
ATTTTAAGGCATCTGAATTTCTCAAAAAGGTGATTTGAGATAATTGTTTAAATTTAATTATGGTA
AAAAAACGGGTAACAACATCACACTATCTAAATTTTTTATTTTATTTCAGGCTCATTTGAAGATT
TTACAAGGCAAACGAGATATCGTTGAAAAGGTAACTCGACGAAGTTTAACATAAAAATATTCAAA
AAGTCTCAAAAAATTGCATTATTGGAGAAAGGAAATTTTAAATTCGAATTTAGTTCGGCACTAAC
AGCAAGTGTAAGAAAAAGGAAGCACTCGGGCTCAGAAATCCTTCCCTAGATTTTAAATATCAG
Found at i:144702 original size:43 final size:43
Alignment explanation
Indices: 144654--144740 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
144644 AACGAATTTC
* *
144654 CTCCAAATATTCTTGCATTTTATATGTTTTACTTATTTAATTA
1 CTCCAAACATTCTTGCATTTTATATGTTTCACTTATTTAATTA
144697 CTCCAAACATTCTTGCATTTTATATGTTTCACTTATTTAATTA
1 CTCCAAACATTCTTGCATTTTATATGTTTCACTTATTTAATTA
144740 C
1 C
144741 CATTATGCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.28, C:0.17, G:0.05, T:0.51
Consensus pattern (43 bp):
CTCCAAACATTCTTGCATTTTATATGTTTCACTTATTTAATTA
Found at i:145821 original size:47 final size:47
Alignment explanation
Indices: 145767--145860 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
145757 CATTAGAAAG
*
145767 GTATTATGTTATTAACTTATTGTAATGTTATCTTTATTATAAAGTTT
1 GTATTATGTTATTAACTTATTGTAATGTTATCTTCATTATAAAGTTT
145814 GTATTATGTTATTAACTTATTGTAATGTTATCTTCATTATAAAGTTT
1 GTATTATGTTATTAACTTATTGTAATGTTATCTTCATTATAAAGTTT
145861 AAGTATAGAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (47 bp):
GTATTATGTTATTAACTTATTGTAATGTTATCTTCATTATAAAGTTT
Found at i:149519 original size:43 final size:43
Alignment explanation
Indices: 149463--149568 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 43
149453 TAAATACCAT
* *
149463 TAAATACATAAATTTAGTGGCATTTTCCATGCTAAAATGCCAC
1 TAAATATATAAATTTAGTGGCATTTTCCATGCTAAAACGCCAC
* * * * * * * *
149506 TAAATTTATAAATTTAGTAGCGTTTTTCATGTTCAAACGTCGC
1 TAAATATATAAATTTAGTGGCATTTTCCATGCTAAAACGCCAC
*
149549 TAAATATATTAATTTAGTGG
1 TAAATATATAAATTTAGTGG
149569 GGTTTTTTAT
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (43 bp):
TAAATATATAAATTTAGTGGCATTTTCCATGCTAAAACGCCAC
Found at i:149574 original size:43 final size:42
Alignment explanation
Indices: 149505--149615 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
149495 TAAAATGCCA
* * ** *
149505 CTAAATTTATAAATTTAGTAGCGTTTTTCATGTTCAAACGTCG
1 CTAAATATATAAATTTAGTGGCGTTTTTCAT-CACAAACATCG
* * *
149548 CTAAATATATTAATTTAGTGGGGTTTTTTATCACAAACATCG
1 CTAAATATATAAATTTAGTGGCGTTTTTCATCACAAACATCG
* *
149590 CTAAATAAATAAATTTAGTGACGTTT
1 CTAAATATATAAATTTAGTGGCGTTT
149616 GTGATTAAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
42 30 0.54
43 26 0.46
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.41
Consensus pattern (42 bp):
CTAAATATATAAATTTAGTGGCGTTTTTCATCACAAACATCG
Done.