Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2661
Parameters: 2 7 7 80 10 50 1000
Length:  52142

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
625--677
16
3.3
16
81
0
61
49
33
13
3
1.60
609--681
32
2.3
32
77
13
87
47
30
13
8
1.72
555--661
48
2.3
47
75
1
115
48
25
11
14
1.77
1147--1176
16
1.9
15
93
6
51
53
0
16
30
1.44
1801--1830
14
2.1
14
93
0
51
20
3
0
76
0.92
6460--6496
19
1.9
19
88
0
56
45
0
10
43
1.39
6460--6505
19
2.5
20
79
13
53
45
0
10
43
1.39
6694--6718
2
12.5
2
100
0
50
0
52
0
48
1.00
9940--9971
16
2.0
16
93
0
55
37
6
28
28
1.81
12011--12117
36
3.0
36
91
0
160
37
28
14
20
1.91
14256--14281
13
2.0
13
100
0
52
23
23
15
38
1.92
17289--17330
2
21.0
2
90
9
68
47
0
2
50
1.14
17754--17784
16
1.9
16
93
0
53
25
0
0
74
0.82
18634--18733
52
1.9
52
85
0
137
28
13
23
36
1.92
24014--24071
21
2.8
21
82
7
64
37
17
3
41
1.66
24431--24487
21
2.7
21
97
0
105
33
10
19
36
1.86
24543--24610
19
3.9
19
78
21
85
35
11
14
38
1.83
24564--24588
13
1.9
13
100
0
50
36
16
16
32
1.90
24545--24607
32
2.0
32
96
0
117
34
12
15
36
1.86
24650--24675
13
2.0
13
100
0
52
30
15
15
38
1.88
24630--24696
33
2.0
33
88
0
98
25
14
16
43
1.86
27145--27217
27
2.7
27
87
6
94
23
34
21
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27200--27370
51
3.3
51
79
4
198
29
26
11
32
1.92
27031--27370
105
3.2
105
69
12
273
30
26
11
31
1.92
27353--27434
28
2.9
28
80
7
87
25
31
15
26
1.96
39828--39888
9
6.6
9
78
10
52
85
4
9
0
0.74
39828--39890
14
4.3
15
80
6
58
85
4
9
0
0.72
39827--39874
24
2.0
24
87
0
69
87
8
4
0
0.66
40856--41863
55
18.3
55
92
4
1512
29
30
20
20
1.98
45275--46298
49
21.7
49
83
8
1290
30
18
26
25
1.98
45266--46303
92
11.1
92
91
3
1513
30
18
26
24
1.98
45698--45765
21
3.2
21
64
32
54
30
17
26
25
1.97
46298--46367
33
2.1
35
94
5
126
20
17
37
25
1.94
46377--47816
34
44.6
33
79
13
1528
30
12
34
21
1.91
46352--47825
354
4.1
348
92
4
1905
31
12
35
21
1.91
46372--47821
676
2.1
675
95
2
2592
31
12
34
21
1.91
47796--47940
31
4.7
30
82
6
157
28
17
28
24
1.98
47764--47937
93
1.9
93
82
2
224
28
17
31
22
1.97
48971--49004
15
2.3
15
89
0
50
0
8
5
85
0.75

Tables:   1

The End!