genome.fa.s2662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2662
Parameters: 2 7 7 80 10 50 1000
Length:  129172

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1236--1279	24	1.9	22	81	9	52	68	4	6	20	1.31
4847--4884	12	3.2	12	88	7	60	65	0	0	34	0.93
6185--6878	370	1.9	365	97	1	1129	35	14	15	34	1.88
12926--12969	3	14.7	3	100	0	88	68	0	0	31	0.90
13681--13727	15	3.4	14	77	11	53	44	0	0	55	0.99
19272--19312	2	20.5	2	89	0	64	43	0	2	53	1.13
22964--23011	16	2.9	17	74	20	57	56	0	0	43	0.99
22932--23023	40	2.3	39	85	12	125	57	0	1	41	1.06
22948--23032	32	2.7	32	85	7	111	57	0	1	41	1.06
22983--23031	25	2.0	25	84	8	64	55	0	0	44	0.99
24579--24685	42	2.5	42	84	3	135	19	20	19	40	1.92
27755--27793	21	1.9	21	89	5	62	56	0	0	43	0.99
28236--28277	18	2.2	20	87	8	61	47	2	0	50	1.14
28324--28350	2	13.5	2	100	0	54	48	0	0	51	1.00
32679--32724	2	23.0	2	95	0	83	47	0	50	2	1.13
34861--34893	3	11.0	3	93	0	57	63	3	33	0	1.10
41747--41804	12	5.1	12	80	17	70	67	0	1	31	1.01
41747--41825	19	4.1	19	73	10	70	63	0	1	35	1.03
41762--41823	27	2.4	25	84	10	72	61	0	1	37	1.06
42329--42382	19	2.9	19	70	22	51	55	0	0	44	0.99
43107--43135	14	2.0	15	93	6	51	65	0	0	34	0.93
43108--43156	19	2.5	19	80	9	55	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45401--45434	3	11.3	3	93	0	59	61	0	0	38	0.96
47442--47475	15	2.4	14	90	5	50	41	0	0	58	0.98
47443--47495	23	2.4	22	70	14	54	43	0	0	56	0.99
47669--47711	23	1.9	22	86	13	61	39	0	0	60	0.97
48397--48502	29	3.6	30	83	7	119	41	8	2	47	1.49
56508--56545	2	19.0	2	100	0	76	0	50	0	50	1.00
59881--59949	32	2.4	28	76	23	79	52	0	1	46	1.09
59986--60060	37	2.0	37	92	5	125	18	17	14	49	1.80
64559--64627	34	2.0	34	100	0	138	46	11	17	24	1.81
65662--65697	2	18.0	2	100	0	72	0	50	0	50	1.00
65877--65937	18	3.6	18	67	24	51	44	0	1	54	1.10
65862--65927	32	2.0	33	82	8	82	45	0	0	54	0.99
67341--67667	73	4.5	72	79	8	299	55	10	1	32	1.45
67348--67684	147	2.3	143	79	12	364	54	11	1	32	1.46
72253--72278	2	13.0	2	100	0	52	50	0	0	50	1.00
75997--76021	12	2.1	12	100	0	50	44	0	0	56	0.99
76725--76758	2	17.0	2	100	0	68	50	0	0	50	1.00
76952--76992	6	6.8	6	97	0	73	34	14	0	51	1.43
77037--77073	19	1.9	19	88	0	56	45	0	0	54	1.00
81496--81520	2	12.5	2	100	0	50	52	0	0	48	1.00
84425--84470	2	23.0	2	95	0	83	52	0	0	47	1.00
85971--85996	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86638--86695	15	3.9	14	76	10	53	56	1	0	41	1.09
86636--86695	30	2.0	30	86	3	84	56	1	0	41	1.09
86471--86809	175	1.9	176	81	3	405	48	6	5	38	1.53
88347--88383	15	2.4	16	86	9	58	35	0	8	56	1.29
88370--88424	16	3.4	16	78	14	60	49	0	0	50	1.00
88360--88438	32	2.5	31	76	15	72	46	0	1	51	1.08
89372--89434	28	2.3	28	78	15	69	44	3	1	50	1.27
89888--89941	26	2.1	26	83	10	67	25	5	0	68	1.11
89903--89961	26	2.3	26	79	5	66	28	6	0	64	1.19
90007--90046	15	2.8	14	81	7	53	37	2	0	60	1.11
90437--90488	22	2.2	24	86	10	81	42	0	3	53	1.19
90558--90597	12	3.3	13	80	13	50	32	0	0	67	0.91
92203--92232	15	2.0	15	93	0	51	26	20	23	30	1.98
95708--95740	7	5.0	7	92	7	52	0	9	0	90	0.44
97499--97552	27	2.0	27	82	7	65	51	0	3	44	1.19
98419--98521	49	2.1	47	83	15	122	41	0	0	57	1.05
98419--98494	22	3.2	22	75	15	71	38	0	1	60	1.05
98440--98532	26	3.8	24	72	19	86	44	0	0	55	0.99
102460--102543	5	17.4	5	70	20	54	42	2	0	54	1.13
102460--102533	14	5.7	14	66	18	61	44	2	0	52	1.15
102463--102541	26	3.3	24	77	16	92	41	2	0	55	1.13
103328--104490	587	2.0	584	83	4	1448	41	12	12	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105441--105470	4	7.5	4	100	0	60	76	0	0	23	0.78
105528--105580	24	2.1	25	93	6	90	62	0	5	32	1.19
107261--107301	19	2.2	19	86	0	55	29	0	4	65	1.13
107257--107305	26	2.0	24	84	15	64	30	0	4	65	1.11
107265--107315	26	2.0	26	81	14	61	33	0	3	62	1.13
107282--107347	16	4.1	17	75	21	61	39	0	3	57	1.14
108193--108232	21	1.9	21	84	0	53	60	5	2	32	1.32
109208--109241	16	2.1	17	88	5	52	44	2	5	47	1.42
109257--109313	30	2.0	29	83	13	73	40	1	0	57	1.09
112881--112930	16	3.1	16	100	0	100	32	12	24	32	1.91
112955--112983	2	14.5	2	100	0	58	51	0	0	48	1.00
114631--115071	32	14.4	32	73	14	236	25	15	27	30	1.96
114722--115032	28	10.5	29	77	10	229	24	15	28	30	1.96
114676--114826	62	2.4	63	79	6	175	29	17	23	29	1.97
114784--115005	86	2.5	88	82	8	249	24	15	29	31	1.95
114784--115043	58	4.4	58	81	7	235	23	15	29	31	1.95
115286--115360	20	3.8	20	78	0	87	34	13	12	40	1.81
115286--115363	40	2.0	39	87	2	111	34	12	12	39	1.82
116273--116328	22	2.5	23	94	5	105	17	10	8	62	1.52
116281--116335	22	2.6	21	88	5	58	20	9	9	61	1.52
118632--119173	28	18.4	28	78	9	350	25	16	25	31	1.97
118668--119971	55	23.1	55	79	9	424	27	14	29	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118632--119922	83	15.2	84	77	9	364	27	14	29	28	1.95
118945--119152	32	6.5	32	85	7	271	23	17	27	31	1.97
118830--119152	96	3.5	94	83	7	330	24	17	26	30	1.97
118944--119152	64	3.3	64	87	4	305	22	17	27	31	1.97
119163--120114	28	34.6	28	86	2	1173	28	13	31	26	1.94
119163--120114	55	17.3	54	84	3	1087	28	13	31	26	1.94
124994--125192	96	2.1	97	86	4	278	30	12	27	29	1.92
125022--125226	97	2.1	96	84	6	263	31	12	25	30	1.92
126785--126817	17	1.9	17	93	0	57	6	18	0	75	1.00
127668--127730	23	2.7	23	77	2	63	55	4	3	36	1.37
127677--127730	23	2.3	24	80	3	65	59	3	1	35	1.26
129012--129054	21	2.0	21	83	16	54	16	30	6	46	1.73

Tables:   1

The End!